Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000870

Physical Location & Seq

Genomic Coordinates Forward (+)

7805475 .. 7814577

Gene Structure 9103 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG093100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGGACGGAGATGGGATTGTTCTTCAACCTGGTGGGGGATCACCAATTTCTTCAACCAACAACCCCATCTCAAAGAGATGGAAAGTTCTCTTGCCAGATGGGTCTCATGACGCTTACCCTGAACCTCGACGCCTCGAGACCCACGAAATACCCCAGATCGTTGAGCAGTATCGCCATGCTGCCTTGAATGCCATTCGCGCAGGTCAGTATCTAGGCAACACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009605 GO:0009607 GO:0009620 GO:0009694 GO:0009695 GO:0009791 GO:0009908 GO:0009987 GO:0010035 GO:0010193 GO:0010817 GO:0016053 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0019752 GO:0022414 GO:0031407 GO:0031408 GO:0032501 GO:0032502 GO:0032787 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042579 GO:0042802 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046677 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0055114 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0090567 GO:0099402 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

74

Amino Acids

8.1

Weight (kDa)

6.24

Isoelectric Point (pI)

52.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06050 AT2G06050 AT2G06050
fragaria_vesca	FvH4_1g08451 FvH4_1g08452 FvH4_1g08453 FvH4_1g08454 FvH4_1g08510 FvH4_1g08510 FvH4_1g08510 FvH4_1g08510
malus_domestica	MD00G1142600.v1.1 MD02G1089100.v1.1 MD12G1067300.v1.1 MD15G1216200.v1.1
prunus_persica	Prupe.7G200800_v2.0.a1
pyrus_communis	pycom02g07130 pycom15g19180
rosa_chinensis	RchiOBHm_Chr2g0094561 RchiOBHm_Chr2g0094611 RchiOBHm_Chr2g0094631 RchiOBHm_Chr2g0094641 RchiOBHm_Chr2g0150041 RchiOBHm_Chr7g0211621 RchiOBHm_Chr7g0230281
rosa_laevigata	RLG00000002990 RLG00000016504 RLG00000016506 RLG00000016507 RLG00000020462
rosa_multiflora	Rmu_co8133296.1_g000001 Rmu_co8390375.1_g000001 Rmu_sc0003760.1_g000017 Rmu_sc0004232.1_g000012 Rmu_sc0004359.1_g000033 Rmu_sc0004359.1_g000036 Rmu_sc0006422.1_g000001 Rmu_sc0009445.1_g000018 Rmu_sc0017068.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097490 Rroxscaffold_2G00147030 Rroxscaffold_2G00147040 Rroxscaffold_2G00147050 Rroxscaffold_3G00247670
rosa_rugosa	Rorug02G0045400 Rorug02G0045400 Rorug02G0045600 Rorug02G0045700 Rorug02G0418000 Rorug07G0126300
rosa_samantha	Rh2AG093100 Rh2BG093400 Rh2BG093700 Rh2BG489500 Rh2CG095800 Rh2CG096000 Rh2DG092200 Rh2DG092400 Rh7AG259000 Rh7BG253300 Rh7CG276100 Rh7DG266600
rosa_wichuraiana	Rw0G003550 Rw0G003560 Rw2G038940 Rw7G022140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	191
AccII	CGCG	1 cut(s)	198
AclWI	GGATC	1 cut(s)	46
AcyI	GRCGYC	1 cut(s)	130
AfiI	CCNNNNNNNGG	1 cut(s)	35
AgsI	TTSAA	3 cut(s)	26, 54, 187
AjnI	CCWGG	1 cut(s)	28
Alw26I	GTCTC	2 cut(s)	108, 131
AlwI	GGATC	1 cut(s)	46
Ama87I	CYCGRG	1 cut(s)	134
ApeKI	GCWGC	1 cut(s)	179
AspLEI	GCGC	1 cut(s)	200
AsuHPI	GGTGA	1 cut(s)	33
AvaI	CYCGRG	1 cut(s)	134
BbvI	GCAGC	1 cut(s)	166
BccI	CCATC	4 cut(s)	5, 72, 74, 92
BciT130I	CCWGG	1 cut(s)	30
BcoDI	GTCTC	2 cut(s)	108, 131
BfaI	CTAG	1 cut(s)	212
BfuAI	ACCTGC	1 cut(s)	191
BisI	GCNGC	1 cut(s)	180
BlsI	GCNGC	1 cut(s)	181
Bme1390I	CCNGG	1 cut(s)	30
BmeT110I	CYCGRG	1 cut(s)	134
BmrFI	CCNGG	1 cut(s)	30
BsaHI	GRCGYC	1 cut(s)	130
BsaI	GGTCTC	2 cut(s)	108, 131
Bsc4I	CCNNNNNNNGG	1 cut(s)	35
BseBI	CCWGG	1 cut(s)	30
BseLI	CCNNNNNNNGG	1 cut(s)	35
BseXI	GCAGC	1 cut(s)	166
Bsh1236I	CGCG	1 cut(s)	198
BsiHKCI	CYCGRG	1 cut(s)	134
BslI	CCNNNNNNNGG	1 cut(s)	35
BsmAI	GTCTC	2 cut(s)	108, 131
BsmI	GAATGC	1 cut(s)	193
Bso31I	GGTCTC	2 cut(s)	108, 131
BsoBI	CYCGRG	1 cut(s)	134
Bsp143I	GATC	2 cut(s)	38, 156
BspFNI	CGCG	1 cut(s)	198
BspHI	TCATGA	1 cut(s)	106
BspMI	ACCTGC	1 cut(s)	191
BspPI	GGATC	1 cut(s)	46
BspTNI	GGTCTC	2 cut(s)	108, 131
BssMI	GATC	2 cut(s)	38, 156
BssNI	GRCGYC	1 cut(s)	130
Bst2UI	CCWGG	1 cut(s)	30
BstACI	GRCGYC	1 cut(s)	130
BstFNI	CGCG	1 cut(s)	198
BstHHI	GCGC	1 cut(s)	200
BstKTI	GATC	2 cut(s)	41, 159
BstMAI	GTCTC	2 cut(s)	108, 131
BstMBI	GATC	2 cut(s)	38, 156
BstMWI	GCNNNNNNNGC	2 cut(s)	188, 197
BstNI	CCWGG	1 cut(s)	30
BstSCI	CCNGG	1 cut(s)	28
BstUI	CGCG	1 cut(s)	198
BstV1I	GCAGC	1 cut(s)	166
BveI	ACCTGC	1 cut(s)	191
CciI	TCATGA	1 cut(s)	106
CfoI	GCGC	1 cut(s)	200
CseI	GACGC	2 cut(s)	119, 138
CsiI	ACCWGGT	1 cut(s)	28
CviAII	CATG	2 cut(s)	107, 176
DpnI	GATC	2 cut(s)	40, 158
DpnII	GATC	2 cut(s)	38, 156
Eco31I	GGTCTC	2 cut(s)	108, 131
Eco88I	CYCGRG	1 cut(s)	134
EcoRII	CCWGG	1 cut(s)	28
FaeI	CATG	2 cut(s)	110, 179
FaiI	YATR	3 cut(s)	108, 177, 223
FatI	CATG	2 cut(s)	106, 175
Fnu4HI	GCNGC	1 cut(s)	180
Fsp4HI	GCNGC	1 cut(s)	180
FspBI	CTAG	1 cut(s)	212
GlaI	GCGC	1 cut(s)	199
GluI	GCNGC	1 cut(s)	180
HgaI	GACGC	2 cut(s)	119, 138
HhaI	GCGC	1 cut(s)	200
Hin1I	GRCGYC	1 cut(s)	130
Hin1II	CATG	2 cut(s)	110, 179
Hin6I	GCGC	1 cut(s)	198
HinP1I	GCGC	1 cut(s)	198
HphI	GGTGA	1 cut(s)	33
Hpy188III	TCNNGA	2 cut(s)	107, 136
Hpy99I	CGWCG	1 cut(s)	132
HpyF10VI	GCNNNNNNNGC	2 cut(s)	188, 197
Hsp92I	GRCGYC	1 cut(s)	130
Hsp92II	CATG	2 cut(s)	110, 179
HspAI	GCGC	1 cut(s)	198
Kzo9I	GATC	2 cut(s)	38, 156
LpnPI	CCDG	6 cut(s)	15, 42, 108, 132, 167, 186
Lsp1109I	GCAGC	1 cut(s)	166
MabI	ACCWGGT	1 cut(s)	28
MaeI	CTAG	1 cut(s)	212
MalI	GATC	2 cut(s)	40, 158
MboI	GATC	2 cut(s)	38, 156
MboII	GAAGA	2 cut(s)	14, 42
MluCI	AATT	1 cut(s)	45
MnlI	CCTC	2 cut(s)	135, 143
MspR9I	CCNGG	1 cut(s)	30
Mva1269I	GAATGC	1 cut(s)	193
MvaI	CCWGG	1 cut(s)	30
MvnI	CGCG	1 cut(s)	198
MwoI	GCNNNNNNNGC	2 cut(s)	188, 197
NdeII	GATC	2 cut(s)	38, 156
NlaIII	CATG	2 cut(s)	110, 179
PaeR7I	CTCGAG	1 cut(s)	134
PagI	TCATGA	1 cut(s)	106
PcsI	WCGNNNNNNNCGW	1 cut(s)	141
PctI	GAATGC	1 cut(s)	193
PkrI	GCNGC	1 cut(s)	181
Psp6I	CCWGG	1 cut(s)	28
PspGI	CCWGG	1 cut(s)	28
SatI	GCNGC	1 cut(s)	180
Sau3AI	GATC	2 cut(s)	38, 156
ScrFI	CCNGG	1 cut(s)	30
SetI	ASST	3 cut(s)	31, 127, 205
SexAI	ACCWGGT	1 cut(s)	28
Sfr274I	CTCGAG	1 cut(s)	134
SlaI	CTCGAG	1 cut(s)	134
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
Sse9I	AATT	1 cut(s)	45
SspMI	CTAG	1 cut(s)	212
StyD4I	CCNGG	1 cut(s)	28
TaqI	TCGA	2 cut(s)	127, 135
TasI	AATT	1 cut(s)	45
TseI	GCWGC	1 cut(s)	179
TspGWI	ACGGA	1 cut(s)	21
XhoI	CTCGAG	1 cut(s)	134
XspI	CTAG	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.