Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8390375.1

Orthogroup ID

OG0000870

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 864

Gene Structure 864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8390375.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 644 bp

gttttgatggaattgagatccatgcggcacacggctacctcattgatcaattcttaaaagatgggattaacgatcgaactgatgaatatggtgggtcgcttgcaaaccgttgcaaattcttgattcagattgttcaagcagtagttgaagccattggtgctaatagagttgccgtcagaatctcaccagctattgatttccatgatgctacggactccgacccaattggcctaggccttgcagtgattgacaagctcaatcagcttcaatacaacgtaggctcaaagctcgcttatctccatgtaactcagcctcgtttctttgctcaatacaacggaggcttggccgagtctgatcaagacacatttgctcaattcatgaggactttgcgagaatcttatcaaggtccattcatggctagtggagggtttacgagagaactaggaatggaaaccgtggcttccggtgatgctgatttagtgtcatatggccggaattttatctcaaaccctgacttggtgttgaggtttaagttgaatgctcccttgaacaagtatattagggagactttctacaccgatgaccctgtagttgggtacacagactacccttttctggacaaagaaagtgtgaaagaggattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009605 GO:0009607 GO:0009620 GO:0009694 GO:0009695 GO:0009791 GO:0009908 GO:0009987 GO:0010035 GO:0010193 GO:0010817 GO:0016053 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0019752 GO:0022414 GO:0031407 GO:0031408 GO:0032501 GO:0032502 GO:0032787 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042579 GO:0042802 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046677 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0055114 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0090567 GO:0099402 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

213

Amino Acids

23.74

Weight (kDa)

4.74

Isoelectric Point (pI)

21.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06050 AT2G06050 AT2G06050
fragaria_vesca	FvH4_1g08451 FvH4_1g08452 FvH4_1g08453 FvH4_1g08454 FvH4_1g08510 FvH4_1g08510 FvH4_1g08510 FvH4_1g08510
malus_domestica	MD00G1142600.v1.1 MD02G1089100.v1.1 MD12G1067300.v1.1 MD15G1216200.v1.1
prunus_persica	Prupe.7G200800_v2.0.a1
pyrus_communis	pycom02g07130 pycom15g19180
rosa_chinensis	RchiOBHm_Chr2g0094561 RchiOBHm_Chr2g0094611 RchiOBHm_Chr2g0094631 RchiOBHm_Chr2g0094641 RchiOBHm_Chr2g0150041 RchiOBHm_Chr7g0211621 RchiOBHm_Chr7g0230281
rosa_laevigata	RLG00000002990 RLG00000016504 RLG00000016506 RLG00000016507 RLG00000020462
rosa_multiflora	Rmu_co8133296.1_g000001 Rmu_co8390375.1_g000001 Rmu_sc0003760.1_g000017 Rmu_sc0004232.1_g000012 Rmu_sc0004359.1_g000033 Rmu_sc0004359.1_g000036 Rmu_sc0006422.1_g000001 Rmu_sc0009445.1_g000018 Rmu_sc0017068.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097490 Rroxscaffold_2G00147030 Rroxscaffold_2G00147040 Rroxscaffold_2G00147050 Rroxscaffold_3G00247670
rosa_rugosa	Rorug02G0045400 Rorug02G0045400 Rorug02G0045600 Rorug02G0045700 Rorug02G0418000 Rorug07G0126300
rosa_samantha	Rh2AG093100 Rh2BG093400 Rh2BG093700 Rh2BG489500 Rh2CG095800 Rh2CG096000 Rh2DG092200 Rh2DG092400 Rh7AG259000 Rh7BG253300 Rh7CG276100 Rh7DG266600
rosa_wichuraiana	Rw0G003550 Rw0G003560 Rw2G038940 Rw7G022140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	25
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	2 cut(s)	344, 489
AcsI	RAATTY	2 cut(s)	115, 495
AfaI	GTAC	1 cut(s)	598
AfiI	CCNNNNNNNGG	3 cut(s)	516, 592, 615
AgsI	TTSAA	5 cut(s)	136, 148, 268, 537, 549
AluBI	AGCT	4 cut(s)	190, 255, 264, 288
AluI	AGCT	4 cut(s)	190, 255, 264, 288
Alw26I	GTCTC	1 cut(s)	559
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	4 cut(s)	228, 234, 344, 489
ApoI	RAATTY	2 cut(s)	115, 495
AspA2I	CCTAGG	1 cut(s)	231
AspS9I	GGNCC	1 cut(s)	406
AsuHPI	GGTGA	2 cut(s)	176, 478
AvaII	GGWCC	1 cut(s)	406
AvrII	CCTAGG	1 cut(s)	231
BccI	CCATC	1 cut(s)	55
BceAI	ACGGC	2 cut(s)	48, 157
BclI	TGATCA	2 cut(s)	45, 354
BcoDI	GTCTC	1 cut(s)	559
BfaI	CTAG	3 cut(s)	232, 419, 442
BfmI	CTRYAG	1 cut(s)	587
BisI	GCNGC	1 cut(s)	26
BlnI	CCTAGG	1 cut(s)	231
BlsI	GCNGC	1 cut(s)	27
Bme18I	GGWCC	1 cut(s)	406
BmgT120I	GGNCC	1 cut(s)	406
BmsI	GCATC	2 cut(s)	195, 459
BsaJI	CCNNGG	2 cut(s)	231, 455
BsaWI	WCCGGW	1 cut(s)	463
Bsc4I	CCNNNNNNNGG	3 cut(s)	516, 592, 615
BseDI	CCNNGG	2 cut(s)	231, 455
BseLI	CCNNNNNNNGG	3 cut(s)	516, 592, 615
BseMII	CTCAG	1 cut(s)	322
Bsh1285I	CGRYCG	1 cut(s)	75
BshFI	GGCC	4 cut(s)	230, 236, 346, 491
BsiEI	CGRYCG	1 cut(s)	75
BsiSI	CCGG	2 cut(s)	464, 492
BslI	CCNNNNNNNGG	3 cut(s)	516, 592, 615
BsmAI	GTCTC	1 cut(s)	559
BsmI	GAATGC	1 cut(s)	543
BsnI	GGCC	4 cut(s)	230, 236, 346, 491
Bsp143I	GATC	4 cut(s)	17, 45, 72, 354
BspACI	CCGC	1 cut(s)	25
BspANI	GGCC	4 cut(s)	230, 236, 346, 491
BspCNI	CTCAG	1 cut(s)	321
BspHI	TCATGA	1 cut(s)	377
BspPI	GGATC	1 cut(s)	12
BssECI	CCNNGG	2 cut(s)	231, 455
BssMI	GATC	4 cut(s)	17, 45, 72, 354
BssT1I	CCWWGG	1 cut(s)	231
Bst4CI	ACNGT	2 cut(s)	109, 456
BstC8I	GCNNGC	2 cut(s)	101, 290
BstDEI	CTNAG	1 cut(s)	308
BstDSI	CCRYGG	1 cut(s)	455
BstKTI	GATC	4 cut(s)	20, 48, 75, 357
BstMAI	GTCTC	1 cut(s)	559
BstMBI	GATC	4 cut(s)	17, 45, 72, 354
BstMCI	CGRYCG	1 cut(s)	75
BstMWI	GCNNNNNNNGC	2 cut(s)	157, 261
BstSFI	CTRYAG	1 cut(s)	587
BstX2I	RGATCY	1 cut(s)	17
BstYI	RGATCY	1 cut(s)	17
BsuRI	GGCC	4 cut(s)	230, 236, 346, 491
BtgI	CCRYGG	1 cut(s)	455
BtsI	GCAGTG	1 cut(s)	248
BtsIMutI	CAGTG	1 cut(s)	248
Cac8I	GCNNGC	2 cut(s)	101, 290
CciI	TCATGA	1 cut(s)	377
Cfr13I	GGNCC	1 cut(s)	406
Csp6I	GTAC	1 cut(s)	597
CviAII	CATG	5 cut(s)	22, 202, 301, 378, 414
CviQI	GTAC	1 cut(s)	597
DdeI	CTNAG	1 cut(s)	308
DpnI	GATC	4 cut(s)	19, 47, 74, 356
DpnII	GATC	4 cut(s)	17, 45, 72, 354
EaeI	YGGCCR	2 cut(s)	344, 489
Eco130I	CCWWGG	1 cut(s)	231
Eco147I	AGGCCT	1 cut(s)	236
Eco47I	GGWCC	1 cut(s)	406
EcoT14I	CCWWGG	1 cut(s)	231
ErhI	CCWWGG	1 cut(s)	231
FaeI	CATG	5 cut(s)	25, 205, 304, 381, 417
FaiI	YATR	9 cut(s)	23, 89, 203, 302, 379, 415, 486, 488, 557
FatI	CATG	5 cut(s)	21, 201, 300, 377, 413
FauNDI	CATATG	1 cut(s)	486
FbaI	TGATCA	2 cut(s)	45, 354
Fnu4HI	GCNGC	1 cut(s)	26
Fsp4HI	GCNGC	1 cut(s)	26
FspBI	CTAG	3 cut(s)	232, 419, 442
GluI	GCNGC	1 cut(s)	26
HaeIII	GGCC	4 cut(s)	230, 236, 346, 491
HapII	CCGG	2 cut(s)	464, 492
Hin1II	CATG	5 cut(s)	25, 205, 304, 381, 417
HinfI	GANTC	5 cut(s)	123, 179, 214, 349, 394
HpaII	CCGG	2 cut(s)	464, 492
HphI	GGTGA	2 cut(s)	176, 478
Hpy166II	GTNNAC	2 cut(s)	431, 599
Hpy188I	TCNGA	4 cut(s)	128, 178, 219, 354
Hpy188III	TCNNGA	4 cut(s)	120, 358, 378, 616
Hpy8I	GTNNAC	2 cut(s)	431, 599
HpyCH4III	ACNGT	2 cut(s)	109, 456
HpyCH4IV	ACGT	1 cut(s)	275
HpyCH4V	TGCA	3 cut(s)	103, 113, 241
HpyF10VI	GCNNNNNNNGC	2 cut(s)	157, 261
HpyF3I	CTNAG	1 cut(s)	308
HpySE526I	ACGT	1 cut(s)	275
Hsp92II	CATG	5 cut(s)	25, 205, 304, 381, 417
Ksp22I	TGATCA	2 cut(s)	45, 354
Kzo9I	GATC	4 cut(s)	17, 45, 72, 354
LmnI	GCTCC	1 cut(s)	546
LpnPI	CCDG	6 cut(s)	200, 477, 505, 524, 599, 601
LweI	GCATC	2 cut(s)	195, 459
MaeI	CTAG	3 cut(s)	232, 419, 442
MaeII	ACGT	1 cut(s)	275
MaeIII	GTNAC	1 cut(s)	303
MalI	GATC	4 cut(s)	19, 47, 74, 356
MboI	GATC	4 cut(s)	17, 45, 72, 354
MfeI	CAATTG	1 cut(s)	224
MflI	RGATCY	1 cut(s)	17
MluCI	AATT	6 cut(s)	11, 49, 115, 224, 373, 495
MlyI	GAGTC	2 cut(s)	208, 358
MmeI	TCCRAC	1 cut(s)	242
MnlI	CCTC	7 cut(s)	49, 323, 331, 374, 418, 518, 630
MseI	TTAA	3 cut(s)	55, 68, 530
MspI	CCGG	2 cut(s)	464, 492
MunI	CAATTG	1 cut(s)	224
Mva1269I	GAATGC	1 cut(s)	543
MwoI	GCNNNNNNNGC	2 cut(s)	157, 261
NdeI	CATATG	1 cut(s)	486
NdeII	GATC	4 cut(s)	17, 45, 72, 354
NlaIII	CATG	5 cut(s)	25, 205, 304, 381, 417
NmeAIII	GCCGAG	1 cut(s)	372
PagI	TCATGA	1 cut(s)	377
PceI	AGGCCT	1 cut(s)	236
PctI	GAATGC	1 cut(s)	543
PfeI	GAWTC	3 cut(s)	123, 179, 394
PkrI	GCNGC	1 cut(s)	27
Ple19I	CGATCG	1 cut(s)	75
PleI	GAGTC	2 cut(s)	208, 357
PpsI	GAGTC	2 cut(s)	208, 357
PspPI	GGNCC	1 cut(s)	406
PsuI	RGATCY	1 cut(s)	17
PvuI	CGATCG	1 cut(s)	75
RsaI	GTAC	1 cut(s)	598
RsaNI	GTAC	1 cut(s)	597
SaqAI	TTAA	3 cut(s)	55, 68, 530
SatI	GCNGC	1 cut(s)	26
Sau3AI	GATC	4 cut(s)	17, 45, 72, 354
Sau96I	GGNCC	1 cut(s)	406
SchI	GAGTC	2 cut(s)	208, 358
SetI	ASST	8 cut(s)	41, 192, 257, 266, 278, 290, 408, 529
SfaNI	GCATC	2 cut(s)	195, 459
SfcI	CTRYAG	1 cut(s)	587
SinI	GGWCC	1 cut(s)	406
Sse9I	AATT	6 cut(s)	11, 49, 115, 224, 373, 495
SseBI	AGGCCT	1 cut(s)	236
SsiI	CCGC	1 cut(s)	25
SspMI	CTAG	3 cut(s)	232, 419, 442
StuI	AGGCCT	1 cut(s)	236
StyI	CCWWGG	1 cut(s)	231
TaaI	ACNGT	2 cut(s)	109, 456
TaiI	ACGT	1 cut(s)	278
TaqI	TCGA	1 cut(s)	75
TasI	AATT	6 cut(s)	11, 49, 115, 224, 373, 495
TauI	GCSGC	1 cut(s)	28
TfiI	GAWTC	3 cut(s)	123, 179, 394
Tru1I	TTAA	3 cut(s)	55, 68, 530
Tru9I	TTAA	3 cut(s)	55, 68, 530
TscAI	CASTG	1 cut(s)	248
TspDTI	ATGAA	3 cut(s)	98, 366, 402
TspGWI	ACGGA	2 cut(s)	226, 350
TspRI	CASTG	1 cut(s)	248
VpaK11BI	GGWCC	1 cut(s)	406
XapI	RAATTY	2 cut(s)	115, 495
XmaJI	CCTAGG	1 cut(s)	231
XspI	CTAG	3 cut(s)	232, 419, 442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.