Rmu_sc0006422.1_g000001

12-oxophytodienoate reductase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006422.1
Physical Location & Seq
Forward (+)
1 .. 2668
2668 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006422.1_g000001.1.cds

Sequence Viewer

Length: 1225 bp
ctctcagctttcaattagtgatctctcagatcggaaaactaaaatggccgattccgcagttactctcttctctcctatcaagatggccaagttcaatctctctcacagggttgtgcttgcgccgatgacgcggtgccgagccttgaacggagtcccgaacccggccctggcggagtactactctcagaggtcaacccccggcggctttctcatcagcgaaggcactttggtctctgacacagccgctgggtttccacatgttcctgggattttctcggatgaacaggttgaggcatggaagaaggtagtcgacgccgttcacgcgaaaggagccattattttctgtcagctatggcatgtaggtcgtgcttcccatggagtttaccaacctggtgggggatcgccaatttcttcaaccaacaatcccatttcaaagaggtggaaaattctcttgccagatgggtctcatggcacttaccctcagcctcaacgccttgaaatacatgagattccccacattgttgagcagtatcgccgcgctgcggtgaatgccattcgagctggttttgatggaattgagatccatggggcacatggctatctaattgatcaattcttgaaagatgggatcaacgatcgaactgatgagtatggtgggtcgcttgcaaatcgctgcaaattcttgattgaaattgttcaagcagtagttgaagccgttggtgctgatagagttggtgtcagagtctcaccagctattgatcaccttgatgctatggactctgacccagttagcctaggctttgctgtgattgaaaggcttaacaagcttcaacagaacataggctcaaagctcacataccttcatgtgactcaacctcgttacgctgcctatggtcaagcagaatcgggcaaacatggcagtgatcaagacgaagccgaatttatgaggactctgagaaaagcttatcaaggtacattcatggcaagtggaggctttactagagagctaggaatggaagctgtggcttctggtgatactgatttagtgtcgtacggtcgctattttatctcaaaccccgacttggttttgagatttaagctgaatgctcccttgactaagtatgtcaggaagactttttacacccaagaccctgttgttgggtacacagattacccttttctgaacaacacaagtattaaagagcaagcagtctcccgcctttga

Protein Analysis

407

Amino Acids

44.76

Weight (kDa)

7.75

Isoelectric Point (pI)

35.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 133
AccI GTMKAC 1 cut(s) 310
AccII CGCG 3 cut(s) 131, 324, 538
AciI CCGC 8 cut(s) 55, 131, 171, 202, 244, 536, 543, 1217
AclWI GGATC 3 cut(s) 407, 575, 636
AcoI YGGCCR 2 cut(s) 46, 85
AcsI RAATTY 3 cut(s) 445, 678, 939
AcyI GRCGYC 1 cut(s) 313
AfaI GTAC 4 cut(s) 177, 974, 1053, 1164
AfiI CCNNNNNNNGG 6 cut(s) 161, 167, 396, 542, 1082, 1158
AflIII ACRYGT 1 cut(s) 257
AjnI CCWGG 3 cut(s) 166, 263, 389
Alw26I GTCTC 4 cut(s) 236, 469, 749, 1217
AlwI GGATC 3 cut(s) 407, 575, 636
AlwNI CAGNNNCTG 1 cut(s) 246
AoxI GGCC 3 cut(s) 46, 85, 163
ApeKI GCWGC 3 cut(s) 540, 673, 885
ApoI RAATTY 3 cut(s) 445, 678, 939
Asp700I GAANNNNTTC 1 cut(s) 694
AspA2I CCTAGG 1 cut(s) 794
AspLEI GCGC 2 cut(s) 122, 540
AspS9I GGNCC 1 cut(s) 164
AsuC2I CCSGG 2 cut(s) 162, 199
AsuHPI GGTGA 4 cut(s) 557, 739, 753, 1044
AvrII CCTAGG 1 cut(s) 794
BaeGI GKGCMC 1 cut(s) 593
BalI TGGCCA 1 cut(s) 87
BanI GGYRCC 1 cut(s) 133
BarI GAAGNNNNNNTAC 2 cut(s) 1122, 1154
BbsI GAAGAC 1 cut(s) 1137
BbvCI CCTCAGC 1 cut(s) 481
BbvI GCAGC 3 cut(s) 527, 660, 872
BccI CCATC 4 cut(s) 77, 453, 564, 618
BceAI ACGGC 2 cut(s) 300, 699
BcgI CGANNNNNNTGC 2 cut(s) 345, 379
BciT130I CCWGG 3 cut(s) 168, 265, 391
BclI TGATCA 3 cut(s) 608, 758, 923
BcnI CCSGG 2 cut(s) 162, 199
BcoDI GTCTC 4 cut(s) 236, 469, 749, 1217
BfaI CTAG 3 cut(s) 795, 1000, 1008
BisI GCNGC 6 cut(s) 203, 244, 536, 541, 674, 886
BlnI CCTAGG 1 cut(s) 794
BlsI GCNGC 6 cut(s) 204, 245, 537, 542, 675, 887
BmcAI AGTACT 1 cut(s) 177
Bme1390I CCNGG 5 cut(s) 162, 168, 199, 265, 391
BmgT120I GGNCC 1 cut(s) 164
BmiI GGNNCC 2 cut(s) 135, 332
BmrFI CCNGG 5 cut(s) 162, 168, 199, 265, 391
BmrI ACTGGG 1 cut(s) 780
BmsI GCATC 1 cut(s) 758
BmuI ACTGGG 1 cut(s) 780
BpiI GAAGAC 1 cut(s) 1137
BplI GAGNNNNNCTC 2 cut(s) 165, 197
Bpu10I CCTNAGC 1 cut(s) 481
BpuMI CCSGG 2 cut(s) 162, 199
BsaHI GRCGYC 1 cut(s) 313
BsaI GGTCTC 2 cut(s) 236, 469
BsaJI CCNNGG 6 cut(s) 166, 197, 264, 374, 584, 794
Bsc4I CCNNNNNNNGG 6 cut(s) 161, 167, 396, 542, 1082, 1158
Bse1I ACTGG 1 cut(s) 786
BseBI CCWGG 3 cut(s) 168, 265, 391
BseDI CCNNGG 6 cut(s) 166, 197, 264, 374, 584, 794
BseGI GGATG 1 cut(s) 284
BseLI CCNNNNNNNGG 6 cut(s) 161, 167, 396, 542, 1082, 1158
BseMII CTCAG 5 cut(s) 18, 40, 198, 495, 945
BseNI ACTGG 1 cut(s) 786
BseSI GKGCMC 1 cut(s) 593
BseXI GCAGC 3 cut(s) 527, 660, 872
BseYI CCCAGC 1 cut(s) 246
Bsh1236I CGCG 3 cut(s) 131, 324, 538
Bsh1285I CGRYCG 2 cut(s) 638, 1058
BshFI GGCC 3 cut(s) 48, 87, 165
BshNI GGYRCC 1 cut(s) 133
BsiEI CGRYCG 2 cut(s) 638, 1058
BsiSI CCGG 2 cut(s) 162, 199
BsiWI CGTACG 1 cut(s) 1051
BslFI GGGAC 1 cut(s) 138
BslI CCNNNNNNNGG 6 cut(s) 161, 167, 396, 542, 1082, 1158
BsmAI GTCTC 4 cut(s) 236, 469, 749, 1217
BsmFI GGGAC 1 cut(s) 138
BsmI GAATGC 2 cut(s) 554, 1109
BsnI GGCC 3 cut(s) 48, 87, 165
Bso31I GGTCTC 2 cut(s) 236, 469
Bsp1286I GDGCHC 1 cut(s) 593
Bsp143I GATC 9 cut(s) 20, 29, 399, 580, 608, 628, 635, 758, 923
Bsp19I CCATGG 2 cut(s) 374, 584
BspACI CCGC 8 cut(s) 55, 131, 171, 202, 244, 536, 543, 1217
BspANI GGCC 3 cut(s) 48, 87, 165
BspCNI CTCAG 5 cut(s) 17, 39, 197, 494, 946
BspFNI CGCG 3 cut(s) 131, 324, 538
BspLI GGNNCC 2 cut(s) 135, 332
BspPI GGATC 3 cut(s) 407, 575, 636
BspT107I GGYRCC 1 cut(s) 133
BspTNI GGTCTC 2 cut(s) 236, 469
BsrI ACTGG 1 cut(s) 786
BssECI CCNNGG 6 cut(s) 166, 197, 264, 374, 584, 794
BssMI GATC 9 cut(s) 20, 29, 399, 580, 608, 628, 635, 758, 923
BssNI GRCGYC 1 cut(s) 313
BssT1I CCWWGG 3 cut(s) 374, 584, 794
Bst2UI CCWGG 3 cut(s) 168, 265, 391
Bst4CI ACNGT 1 cut(s) 1056
Bst6I CTCTTC 1 cut(s) 72
BstACI GRCGYC 1 cut(s) 313
BstC8I GCNNGC 3 cut(s) 118, 664, 1207
BstDEI CTNAG 6 cut(s) 4, 26, 184, 481, 954, 1117
BstDSI CCRYGG 2 cut(s) 374, 584
BstF5I GGATG 1 cut(s) 284
BstFNI CGCG 3 cut(s) 131, 324, 538
BstHHI GCGC 2 cut(s) 122, 540
BstKTI GATC 9 cut(s) 23, 32, 402, 583, 611, 631, 638, 761, 926
BstMAI GTCTC 4 cut(s) 236, 469, 749, 1217
BstMBI GATC 9 cut(s) 20, 29, 399, 580, 608, 628, 635, 758, 923
BstMCI CGRYCG 2 cut(s) 638, 1058
BstMWI GCNNNNNNNGC 9 cut(s) 54, 128, 321, 330, 549, 558, 720, 824, 916
BstNI CCWGG 3 cut(s) 168, 265, 391
BstNSI RCATGY 2 cut(s) 261, 360
BstSCI CCNGG 5 cut(s) 160, 166, 197, 263, 389
BstSLI GKGCMC 1 cut(s) 593
BstUI CGCG 3 cut(s) 131, 324, 538
BstV1I GCAGC 3 cut(s) 527, 660, 872
BstV2I GAAGAC 1 cut(s) 1137
BstX2I RGATCY 1 cut(s) 580
BstXI CCANNNNNNTGG 1 cut(s) 393
BstYI RGATCY 1 cut(s) 580
BsuRI GGCC 3 cut(s) 48, 87, 165
BtgI CCRYGG 2 cut(s) 374, 584
BtsCI GGATG 1 cut(s) 284
BtsI GCAGTG 1 cut(s) 926
BtsIMutI CAGTG 1 cut(s) 926
Cac8I GCNNGC 3 cut(s) 118, 664, 1207
CaiI CAGNNNCTG 1 cut(s) 246
CfoI GCGC 2 cut(s) 122, 540
Cfr13I GGNCC 1 cut(s) 164
CseI GACGC 2 cut(s) 137, 321
CsiI ACCWGGT 1 cut(s) 389
Csp6I GTAC 4 cut(s) 176, 973, 1052, 1163
CviQI GTAC 4 cut(s) 176, 973, 1052, 1163
DdeI CTNAG 6 cut(s) 4, 26, 184, 481, 954, 1117
DpnI GATC 9 cut(s) 22, 31, 401, 582, 610, 630, 637, 760, 925
DpnII GATC 9 cut(s) 20, 29, 399, 580, 608, 628, 635, 758, 923
EaeI YGGCCR 2 cut(s) 46, 85
Eam1104I CTCTTC 1 cut(s) 72
EarI CTCTTC 1 cut(s) 72
EciI GGCGGA 1 cut(s) 186
Eco130I CCWWGG 3 cut(s) 374, 584, 794
Eco31I GGTCTC 2 cut(s) 236, 469
EcoRII CCWGG 3 cut(s) 166, 263, 389
EcoT14I CCWWGG 3 cut(s) 374, 584, 794
ErhI CCWWGG 3 cut(s) 374, 584, 794
FaqI GGGAC 1 cut(s) 138
FbaI TGATCA 3 cut(s) 608, 758, 923
FblI GTMKAC 1 cut(s) 310
Fnu4HI GCNGC 6 cut(s) 203, 244, 536, 541, 674, 886
FokI GGATG 1 cut(s) 291
Fsp4HI GCNGC 6 cut(s) 203, 244, 536, 541, 674, 886
FspBI CTAG 3 cut(s) 795, 1000, 1008
GlaI GCGC 2 cut(s) 121, 539
GluI GCNGC 6 cut(s) 203, 244, 536, 541, 674, 886
GsaI CCCAGC 1 cut(s) 250
HaeIII GGCC 3 cut(s) 48, 87, 165
HapII CCGG 2 cut(s) 162, 199
HgaI GACGC 2 cut(s) 137, 321
HhaI GCGC 2 cut(s) 122, 540
Hin1I GRCGYC 1 cut(s) 313
Hin6I GCGC 2 cut(s) 120, 538
HinP1I GCGC 2 cut(s) 120, 538
HincII GTYRAC 2 cut(s) 193, 311
HindII GTYRAC 2 cut(s) 193, 311
HindIII AAGCTT 2 cut(s) 825, 961
HinfI GANTC 8 cut(s) 51, 151, 509, 742, 777, 869, 903, 950
HpaII CCGG 2 cut(s) 162, 199
HphI GGTGA 4 cut(s) 557, 739, 753, 1044
Hpy166II GTNNAC 5 cut(s) 193, 311, 320, 383, 1165
Hpy188I TCNGA 9 cut(s) 29, 34, 187, 236, 278, 741, 782, 955, 1183
Hpy188III TCNNGA 6 cut(s) 80, 155, 617, 683, 927, 1127
Hpy8I GTNNAC 5 cut(s) 193, 311, 320, 383, 1165
Hpy99I CGWCG 1 cut(s) 315
HpyAV CCTTC 3 cut(s) 213, 296, 870
HpyCH4III ACNGT 1 cut(s) 1056
HpyCH4V TGCA 2 cut(s) 666, 676
HpyF10VI GCNNNNNNNGC 9 cut(s) 54, 128, 321, 330, 549, 558, 720, 824, 916
HpyF3I CTNAG 6 cut(s) 4, 26, 184, 481, 954, 1117
Hsp92I GRCGYC 1 cut(s) 313
HspAI GCGC 2 cut(s) 120, 538
Ksp22I TGATCA 3 cut(s) 608, 758, 923
Kzo9I GATC 9 cut(s) 20, 29, 399, 580, 608, 628, 635, 758, 923
LmnI GCTCC 2 cut(s) 330, 1112
Lsp1109I GCAGC 3 cut(s) 527, 660, 872
LweI GCATC 1 cut(s) 758
MabI ACCWGGT 1 cut(s) 389
MaeI CTAG 3 cut(s) 795, 1000, 1008
MaeIII GTNAC 3 cut(s) 59, 866, 879
MalI GATC 9 cut(s) 22, 31, 401, 582, 610, 630, 637, 760, 925
MboI GATC 9 cut(s) 20, 29, 399, 580, 608, 628, 635, 758, 923
MboII GAAGA 4 cut(s) 59, 311, 403, 1142
MflI RGATCY 1 cut(s) 580
MhlI GDGCHC 1 cut(s) 593
MlsI TGGCCA 1 cut(s) 87
MluCI AATT 9 cut(s) 13, 406, 445, 574, 604, 612, 678, 691, 939
MluNI TGGCCA 1 cut(s) 87
MlyI GAGTC 5 cut(s) 160, 751, 771, 863, 944
MnlI CCTC 8 cut(s) 181, 284, 430, 490, 496, 886, 940, 984
Mox20I TGGCCA 1 cut(s) 87
MroXI GAANNNNTTC 1 cut(s) 694
MscI TGGCCA 1 cut(s) 87
MseI TTAA 3 cut(s) 820, 1096, 1198
MslI CAYNNNNRTG 2 cut(s) 766, 919
Msp20I TGGCCA 1 cut(s) 87
MspA1I CMGCKG 1 cut(s) 246
MspI CCGG 2 cut(s) 162, 199
MspR9I CCNGG 5 cut(s) 162, 168, 199, 265, 391
Mva1269I GAATGC 2 cut(s) 554, 1109
MvaI CCWGG 3 cut(s) 168, 265, 391
MvnI CGCG 3 cut(s) 131, 324, 538
MwoI GCNNNNNNNGC 9 cut(s) 54, 128, 321, 330, 549, 558, 720, 824, 916
NciI CCSGG 2 cut(s) 162, 199
NcoI CCATGG 2 cut(s) 374, 584
NdeII GATC 9 cut(s) 20, 29, 399, 580, 608, 628, 635, 758, 923
NlaIV GGNNCC 2 cut(s) 135, 332
NmeAIII GCCGAG 1 cut(s) 162
NmuCI GTSAC 1 cut(s) 866
NspI RCATGY 2 cut(s) 261, 360
PciI ACATGT 1 cut(s) 257
PctI GAATGC 2 cut(s) 554, 1109
PdmI GAANNNNTTC 1 cut(s) 694
PfeI GAWTC 3 cut(s) 51, 509, 903
Pfl23II CGTACG 1 cut(s) 1051
PkrI GCNGC 6 cut(s) 204, 245, 537, 542, 675, 887
Ple19I CGATCG 1 cut(s) 638
PleI GAGTC 5 cut(s) 159, 750, 771, 863, 944
PpsI GAGTC 5 cut(s) 159, 750, 771, 863, 944
PscI ACATGT 1 cut(s) 257
Psp6I CCWGG 3 cut(s) 166, 263, 389
PspFI CCCAGC 1 cut(s) 246
PspGI CCWGG 3 cut(s) 166, 263, 389
PspLI CGTACG 1 cut(s) 1051
PspN4I GGNNCC 2 cut(s) 135, 332
PspPI GGNCC 1 cut(s) 164
PstNI CAGNNNCTG 1 cut(s) 246
PsuI RGATCY 1 cut(s) 580
PvuI CGATCG 1 cut(s) 638
RsaI GTAC 4 cut(s) 177, 974, 1053, 1164
RsaNI GTAC 4 cut(s) 176, 973, 1052, 1163
RseI CAYNNNNRTG 2 cut(s) 766, 919
SalI GTCGAC 1 cut(s) 309
SaqAI TTAA 3 cut(s) 820, 1096, 1198
SatI GCNGC 6 cut(s) 203, 244, 536, 541, 674, 886
Sau3AI GATC 9 cut(s) 20, 29, 399, 580, 608, 628, 635, 758, 923
Sau96I GGNCC 1 cut(s) 164
ScaI AGTACT 1 cut(s) 177
SchI GAGTC 5 cut(s) 160, 751, 771, 863, 944
ScrFI CCNGG 5 cut(s) 162, 168, 199, 265, 391
SduI GDGCHC 1 cut(s) 593
SexAI ACCWGGT 1 cut(s) 389
SfaNI GCATC 1 cut(s) 758
SmiMI CAYNNNNRTG 2 cut(s) 766, 919
Sse9I AATT 9 cut(s) 13, 406, 445, 574, 604, 612, 678, 691, 939
SsiI CCGC 8 cut(s) 55, 131, 171, 202, 244, 536, 543, 1217
SspMI CTAG 3 cut(s) 795, 1000, 1008
StyD4I CCNGG 5 cut(s) 160, 166, 197, 263, 389
StyI CCWWGG 3 cut(s) 374, 584, 794
TaaI ACNGT 1 cut(s) 1056
TaqI TCGA 3 cut(s) 310, 557, 638
TasI AATT 9 cut(s) 13, 406, 445, 574, 604, 612, 678, 691, 939
TatI WGTACW 1 cut(s) 175
TauI GCSGC 3 cut(s) 205, 246, 538
TfiI GAWTC 3 cut(s) 51, 509, 903
Tru1I TTAA 3 cut(s) 820, 1096, 1198
Tru9I TTAA 3 cut(s) 820, 1096, 1198
TscAI CASTG 1 cut(s) 926
TseFI GTSAC 1 cut(s) 866
TseI GCWGC 3 cut(s) 540, 673, 885
Tsp45I GTSAC 1 cut(s) 866
TspDTI ATGAA 3 cut(s) 295, 852, 968
TspGWI ACGGA 1 cut(s) 163
TspRI CASTG 1 cut(s) 926
XapI RAATTY 3 cut(s) 445, 678, 939
XceI RCATGY 2 cut(s) 261, 360
XcmI CCANNNNNNNNNTGG 1 cut(s) 591
XmaJI CCTAGG 1 cut(s) 794
XmiI GTMKAC 1 cut(s) 310
XmnI GAANNNNTTC 1 cut(s) 694
XspI CTAG 3 cut(s) 795, 1000, 1008
ZrmI AGTACT 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.