Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8133296.1

Orthogroup ID

OG0000870

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 632

Gene Structure 632 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8133296.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

gttcaatctctctcacaggatagtgcttgcgccactgacaaggtgtcgagcatataacgaaattccgcagccagcgatggtcaagtattattctcagaggtcgacccccggtggcttgttaatcagcgaaggcacttcgccctccgacacaagcgctgggtatccacgtgttcctgggatttacacggatgaacaggttgaggcatggaaaaaggttgtcgacgccgttcacgccaaaggttccatttttttctgtcaactttggcatgtaggtcgtgcttctcatcaagtttaccaacctggcggggcttcgccgatttcttcaaccaacaatcccatttcaaatggatggaaagttccgatgccagacggatctcaagagactaattacccacagcctcgacgcctcgaaacccacgaaatacctcagattgttgagcagtatcgccgcgctgccttaaatgcagttctagcaggttttgatggaattgagattcatgcggcacacggcttcctcattgatcaattcttgaaagatggaatcaacgatcgaactgatgagtatggtgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009605 GO:0009607 GO:0009620 GO:0009694 GO:0009695 GO:0009791 GO:0009908 GO:0009987 GO:0010035 GO:0010193 GO:0010817 GO:0016053 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0019752 GO:0022414 GO:0031407 GO:0031408 GO:0032501 GO:0032502 GO:0032787 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042579 GO:0042802 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046677 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0055114 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0090567 GO:0099402 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

190

Amino Acids

21.02

Weight (kDa)

6.4

Isoelectric Point (pI)

39.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06050 AT2G06050 AT2G06050
fragaria_vesca	FvH4_1g08451 FvH4_1g08452 FvH4_1g08453 FvH4_1g08454 FvH4_1g08510 FvH4_1g08510 FvH4_1g08510 FvH4_1g08510
malus_domestica	MD00G1142600.v1.1 MD02G1089100.v1.1 MD12G1067300.v1.1 MD15G1216200.v1.1
prunus_persica	Prupe.7G200800_v2.0.a1
pyrus_communis	pycom02g07130 pycom15g19180
rosa_chinensis	RchiOBHm_Chr2g0094561 RchiOBHm_Chr2g0094611 RchiOBHm_Chr2g0094631 RchiOBHm_Chr2g0094641 RchiOBHm_Chr2g0150041 RchiOBHm_Chr7g0211621 RchiOBHm_Chr7g0230281
rosa_laevigata	RLG00000002990 RLG00000016504 RLG00000016506 RLG00000016507 RLG00000020462
rosa_multiflora	Rmu_co8133296.1_g000001 Rmu_co8390375.1_g000001 Rmu_sc0003760.1_g000017 Rmu_sc0004232.1_g000012 Rmu_sc0004359.1_g000033 Rmu_sc0004359.1_g000036 Rmu_sc0006422.1_g000001 Rmu_sc0009445.1_g000018 Rmu_sc0017068.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097490 Rroxscaffold_2G00147030 Rroxscaffold_2G00147040 Rroxscaffold_2G00147050 Rroxscaffold_3G00247670
rosa_rugosa	Rorug02G0045400 Rorug02G0045400 Rorug02G0045600 Rorug02G0045700 Rorug02G0418000 Rorug07G0126300
rosa_samantha	Rh2AG093100 Rh2BG093400 Rh2BG093700 Rh2BG489500 Rh2CG095800 Rh2CG096000 Rh2DG092200 Rh2DG092400 Rh7AG259000 Rh7BG253300 Rh7CG276100 Rh7DG266600
rosa_wichuraiana	Rw0G003550 Rw0G003560 Rw2G038940 Rw7G022140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	465
AccI	GTMKAC	2 cut(s)	102, 220
AccII	CGCG	1 cut(s)	451
AciI	CCGC	4 cut(s)	66, 304, 449, 501
AclWI	GGATC	1 cut(s)	380
AcsI	RAATTY	1 cut(s)	61
AcvI	CACGTG	1 cut(s)	168
AcyI	GRCGYC	2 cut(s)	223, 404
AfeI	AGCGCT	1 cut(s)	155
AflIII	ACRYGT	1 cut(s)	167
AgsI	TTSAA	4 cut(s)	5, 325, 343, 533
AhdI	GACNNNNNGTC	1 cut(s)	43
AjnI	CCWGG	2 cut(s)	173, 299
AloI	GAACNNNNNNTCC	2 cut(s)	340, 372
Alw26I	GTCTC	1 cut(s)	375
AlwI	GGATC	1 cut(s)	380
Aor51HI	AGCGCT	1 cut(s)	155
ApeKI	GCWGC	2 cut(s)	68, 453
ApoI	RAATTY	1 cut(s)	61
AspLEI	GCGC	3 cut(s)	32, 156, 453
AsuC2I	CCSGG	1 cut(s)	109
BbrPI	CACGTG	1 cut(s)	168
BbvI	GCAGC	2 cut(s)	80, 440
BccI	CCATC	4 cut(s)	71, 343, 477, 531
BceAI	ACGGC	2 cut(s)	210, 524
BcgI	CGANNNNNNTGC	2 cut(s)	255, 289
BciT130I	CCWGG	2 cut(s)	175, 301
BciVI	GTATCC	1 cut(s)	172
BclI	TGATCA	1 cut(s)	521
BcnI	CCSGG	1 cut(s)	109
BcoDI	GTCTC	1 cut(s)	375
BfaI	CTAG	1 cut(s)	471
BfoI	RGCGCY	1 cut(s)	157
BfuAI	ACCTGC	1 cut(s)	465
BfuI	GTATCC	1 cut(s)	172
BisI	GCNGC	4 cut(s)	69, 449, 454, 502
BlsI	GCNGC	4 cut(s)	70, 450, 455, 503
Bme1390I	CCNGG	3 cut(s)	109, 175, 301
BmeRI	GACNNNNNGTC	1 cut(s)	43
BmiI	GGNNCC	1 cut(s)	242
BmrFI	CCNGG	3 cut(s)	109, 175, 301
BmsI	GCATC	1 cut(s)	352
BpuEI	CTTGAG	1 cut(s)	361
BpuMI	CCSGG	1 cut(s)	109
BsaAI	YACGTR	1 cut(s)	168
BsaHI	GRCGYC	2 cut(s)	223, 404
BsaJI	CCNNGG	2 cut(s)	107, 174
BseBI	CCWGG	2 cut(s)	175, 301
BseDI	CCNNGG	2 cut(s)	107, 174
BseGI	GGATG	2 cut(s)	194, 354
BseMII	CTCAG	2 cut(s)	108, 441
BseXI	GCAGC	2 cut(s)	80, 440
BseYI	CCCAGC	1 cut(s)	156
Bsh1236I	CGCG	1 cut(s)	451
Bsh1285I	CGRYCG	1 cut(s)	551
BsiEI	CGRYCG	1 cut(s)	551
BsiSI	CCGG	1 cut(s)	109
BsmAI	GTCTC	1 cut(s)	375
Bsp143I	GATC	3 cut(s)	372, 521, 548
BspACI	CCGC	4 cut(s)	66, 304, 449, 501
BspCNI	CTCAG	2 cut(s)	107, 440
BspFNI	CGCG	1 cut(s)	451
BspLI	GGNNCC	1 cut(s)	242
BspMI	ACCTGC	1 cut(s)	465
BspPI	GGATC	1 cut(s)	380
BssECI	CCNNGG	2 cut(s)	107, 174
BssMI	GATC	3 cut(s)	372, 521, 548
BssNI	GRCGYC	2 cut(s)	223, 404
Bst2UI	CCWGG	2 cut(s)	175, 301
BstACI	GRCGYC	2 cut(s)	223, 404
BstBAI	YACGTR	1 cut(s)	168
BstC8I	GCNNGC	2 cut(s)	28, 73
BstDEI	CTNAG	2 cut(s)	94, 427
BstF5I	GGATG	2 cut(s)	194, 354
BstFNI	CGCG	1 cut(s)	451
BstH2I	RGCGCY	1 cut(s)	157
BstHHI	GCGC	3 cut(s)	32, 156, 453
BstKTI	GATC	3 cut(s)	375, 524, 551
BstMAI	GTCTC	1 cut(s)	375
BstMBI	GATC	3 cut(s)	372, 521, 548
BstMCI	CGRYCG	1 cut(s)	551
BstMWI	GCNNNNNNNGC	3 cut(s)	231, 462, 471
BstNI	CCWGG	2 cut(s)	175, 301
BstNSI	RCATGY	1 cut(s)	270
BstSCI	CCNGG	3 cut(s)	107, 173, 299
BstUI	CGCG	1 cut(s)	451
BstV1I	GCAGC	2 cut(s)	80, 440
BstX2I	RGATCY	1 cut(s)	372
BstYI	RGATCY	1 cut(s)	372
BsuI	GTATCC	1 cut(s)	172
BtgZI	GCGATG	1 cut(s)	90
BtsCI	GGATG	2 cut(s)	194, 354
BtsIMutI	CAGTG	1 cut(s)	33
BveI	ACCTGC	1 cut(s)	465
Cac8I	GCNNGC	2 cut(s)	28, 73
CfoI	GCGC	3 cut(s)	32, 156, 453
CseI	GACGC	2 cut(s)	231, 412
CviAII	CATG	3 cut(s)	205, 267, 498
CviJI	RGCY	5 cut(s)	71, 115, 309, 398, 511
CviKI_1	RGCY	5 cut(s)	71, 115, 309, 398, 511
DdeI	CTNAG	2 cut(s)	94, 427
DpnI	GATC	3 cut(s)	374, 523, 550
DpnII	GATC	3 cut(s)	372, 521, 548
DriI	GACNNNNNGTC	1 cut(s)	43
Eam1105I	GACNNNNNGTC	1 cut(s)	43
Eco47III	AGCGCT	1 cut(s)	155
Eco72I	CACGTG	1 cut(s)	168
EcoRII	CCWGG	2 cut(s)	173, 299
FaeI	CATG	3 cut(s)	208, 270, 501
FaiI	YATR	6 cut(s)	53, 55, 206, 268, 499, 565
FatI	CATG	3 cut(s)	204, 266, 497
FauI	CCCGC	1 cut(s)	297
FbaI	TGATCA	1 cut(s)	521
FblI	GTMKAC	2 cut(s)	102, 220
Fnu4HI	GCNGC	4 cut(s)	69, 449, 454, 502
FokI	GGATG	2 cut(s)	201, 361
Fsp4HI	GCNGC	4 cut(s)	69, 449, 454, 502
FspBI	CTAG	1 cut(s)	471
GlaI	GCGC	3 cut(s)	31, 155, 452
GluI	GCNGC	4 cut(s)	69, 449, 454, 502
GsaI	CCCAGC	1 cut(s)	160
HaeII	RGCGCY	1 cut(s)	157
HapII	CCGG	1 cut(s)	109
HgaI	GACGC	2 cut(s)	231, 412
HhaI	GCGC	3 cut(s)	32, 156, 453
Hin1I	GRCGYC	2 cut(s)	223, 404
Hin1II	CATG	3 cut(s)	208, 270, 501
Hin6I	GCGC	3 cut(s)	30, 154, 451
HinP1I	GCGC	3 cut(s)	30, 154, 451
HincII	GTYRAC	3 cut(s)	103, 221, 258
HindII	GTYRAC	3 cut(s)	103, 221, 258
HinfI	GANTC	2 cut(s)	494, 541
HpaII	CCGG	1 cut(s)	109
Hpy166II	GTNNAC	5 cut(s)	103, 221, 230, 258, 293
Hpy188I	TCNGA	4 cut(s)	97, 146, 361, 430
Hpy188III	TCNNGA	2 cut(s)	378, 530
Hpy8I	GTNNAC	5 cut(s)	103, 221, 230, 258, 293
Hpy99I	CGWCG	2 cut(s)	225, 406
HpyAV	CCTTC	1 cut(s)	123
HpyCH4IV	ACGT	1 cut(s)	167
HpyCH4V	TGCA	1 cut(s)	465
HpyF10VI	GCNNNNNNNGC	3 cut(s)	231, 462, 471
HpyF3I	CTNAG	2 cut(s)	94, 427
HpySE526I	ACGT	1 cut(s)	167
Hsp92I	GRCGYC	2 cut(s)	223, 404
Hsp92II	CATG	3 cut(s)	208, 270, 501
HspAI	GCGC	3 cut(s)	30, 154, 451
Ksp22I	TGATCA	1 cut(s)	521
Kzo9I	GATC	3 cut(s)	372, 521, 548
Lsp1109I	GCAGC	2 cut(s)	80, 440
LweI	GCATC	1 cut(s)	352
MaeI	CTAG	1 cut(s)	471
MaeII	ACGT	1 cut(s)	167
MalI	GATC	3 cut(s)	374, 523, 550
MboI	GATC	3 cut(s)	372, 521, 548
MboII	GAAGA	1 cut(s)	313
MflI	RGATCY	1 cut(s)	372
MluCI	AATT	4 cut(s)	61, 386, 487, 525
MmeI	TCCRAC	1 cut(s)	169
MnlI	CCTC	7 cut(s)	91, 152, 194, 409, 417, 436, 525
MseI	TTAA	2 cut(s)	120, 459
MspI	CCGG	1 cut(s)	109
MspR9I	CCNGG	3 cut(s)	109, 175, 301
MvaI	CCWGG	2 cut(s)	175, 301
MvnI	CGCG	1 cut(s)	451
MwoI	GCNNNNNNNGC	3 cut(s)	231, 462, 471
NciI	CCSGG	1 cut(s)	109
NdeII	GATC	3 cut(s)	372, 521, 548
NlaIII	CATG	3 cut(s)	208, 270, 501
NlaIV	GGNNCC	1 cut(s)	242
NspI	RCATGY	1 cut(s)	270
PcsI	WCGNNNNNNNCGW	1 cut(s)	415
PfeI	GAWTC	2 cut(s)	494, 541
PkrI	GCNGC	4 cut(s)	70, 450, 455, 503
Ple19I	CGATCG	1 cut(s)	551
PmaCI	CACGTG	1 cut(s)	168
PmlI	CACGTG	1 cut(s)	168
Ppu21I	YACGTR	1 cut(s)	168
Psp6I	CCWGG	2 cut(s)	173, 299
PspCI	CACGTG	1 cut(s)	168
PspFI	CCCAGC	1 cut(s)	156
PspGI	CCWGG	2 cut(s)	173, 299
PspN4I	GGNNCC	1 cut(s)	242
PsuI	RGATCY	1 cut(s)	372
PvuI	CGATCG	1 cut(s)	551
SalI	GTCGAC	2 cut(s)	101, 219
SaqAI	TTAA	2 cut(s)	120, 459
SatI	GCNGC	4 cut(s)	69, 449, 454, 502
Sau3AI	GATC	3 cut(s)	372, 521, 548
ScrFI	CCNGG	3 cut(s)	109, 175, 301
SfaNI	GCATC	1 cut(s)	352
SmlI	CTYRAG	1 cut(s)	376
SmoI	CTYRAG	1 cut(s)	376
Sse9I	AATT	4 cut(s)	61, 386, 487, 525
SsiI	CCGC	4 cut(s)	66, 304, 449, 501
SspMI	CTAG	1 cut(s)	471
StyD4I	CCNGG	3 cut(s)	107, 173, 299
TaiI	ACGT	1 cut(s)	170
TaqI	TCGA	6 cut(s)	47, 102, 220, 401, 409, 551
TasI	AATT	4 cut(s)	61, 386, 487, 525
TauI	GCSGC	2 cut(s)	451, 504
TfiI	GAWTC	2 cut(s)	494, 541
Tru1I	TTAA	2 cut(s)	120, 459
Tru9I	TTAA	2 cut(s)	120, 459
TscAI	CASTG	1 cut(s)	40
TseI	GCWGC	2 cut(s)	68, 453
TspDTI	ATGAA	2 cut(s)	205, 486
TspGWI	ACGGA	2 cut(s)	201, 385
TspRI	CASTG	1 cut(s)	40
XapI	RAATTY	1 cut(s)	61
XceI	RCATGY	1 cut(s)	270
XmiI	GTMKAC	2 cut(s)	102, 220
XspI	CTAG	1 cut(s)	471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.