RLG00000016504

12-oxophytodienoate reductase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
7154408 .. 7156655
2248 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016504

Sequence Viewer

Length: 1077 bp
ATGGCGGATTCTTCATCAAAAGGACTCACCCTCTTCTCACCTTACAAGATGGGCAGGTTCAATCTCTCTCACAGGTCAGTCTTGACTCCAACTTATCTGATTGACAAGAGCAAGCGAGAAATCCGAGAGGGTATACCGTATCCACGTGTTCCTGGGATTTACACGGATGAACAGGTTGAGGCATGGAAAAAGGTTGTAGACGCCGTTCACGCCAAAGGTCGTGCTTCTCATCAAGTTTACCAACCTGGCGGGGGTTCGCCGATTTCTTCAACCAACAATCCCATTTCAAATAGATGGAAAGTTCCGATGCCAGATGGATCTCAAGAGACTTACCCACAGCCTCGACGCCTCGAAACCCACGAAATACCTCAGATTGTTGAGCAGTATCGCCGCGCTGCCTTAAATGCAGTTCGAGCAGGTTTTGATGGAATTGAGATCCATGCGGCACACTGCTACCTCATCGATCAATTCTTGAAAGATGGAATCAACGATCGAACTGATGAGTACGGTGGGTCGCTTGCAAACCGTTGCAAATTCTTGATTGAAATTGTTCAAGCAGTAGTTGACGCCATTGGTGCTGATAGAGTTGCCGTCAGAATCTCACCAGCTATTGATTTCCATGATGCTACGGACTCTGACCCGCTTGGCCTAGGCCTTGCAGTGACTGACAGGCTCAATAAGCTTCAATATAATCTAGGCTCAAAGCTCGCTTATCTCCATGTTACTCAGCCTCGAATCGCTGCTGAATTCAACGGACGCGTGGCCGAGTCTTATCAAGACAGAGAAGCTCAATTCATGAGGACTTTGCGAGAAGCTTATCAAGGTACATTCATGGCTGGTGGAGGTTTTACTAGAGAGCTAGGAATGGAAGCTGTGGCTTCTGGTGATGCTGATTTAGTGTCGTACGGTCGCTATTTTATCTCAAACCCCGACTTGGTTTTGAGATTTAAGCTGAATGCTCCCTTGAACAAGTATATTAGGGAGACTTTCTACACCGATGACCCTGTAGTTGGGTACACAGACTACCCTTTTCTGGACAGAGAAAGTGCGAAAGAGGATGAGCTCTCCGCATTTTGA

Protein Analysis

359

Amino Acids

40.1

Weight (kDa)

5.95

Isoelectric Point (pI)

34.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Oxidored_FMN PF00724 25 - 322 6.6e-61 NADH:flavin oxidoreductase / NADH oxidase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 45, 407
AccI GTMKAC 2 cut(s) 133, 198
AccII CGCG 2 cut(s) 393, 759
AciI CCGC 6 cut(s) 5, 249, 391, 443, 641, 1068
AclWI GGATC 2 cut(s) 325, 430
AcoI YGGCCR 1 cut(s) 762
AcsI RAATTY 2 cut(s) 533, 746
AcvI CACGTG 1 cut(s) 146
AcyI GRCGYC 3 cut(s) 201, 346, 567
AfaI GTAC 4 cut(s) 506, 826, 905, 1016
AfiI CCNNNNNNNGG 4 cut(s) 251, 934, 1010, 1033
AflIII ACRYGT 2 cut(s) 145, 757
AgsI TTSAA 9 cut(s) 61, 270, 288, 475, 545, 554, 686, 751, 967
AjnI CCWGG 2 cut(s) 151, 244
AluBI AGCT 9 cut(s) 608, 682, 706, 788, 815, 859, 872, 952, 1063
AluI AGCT 9 cut(s) 608, 682, 706, 788, 815, 859, 872, 952, 1063
Alw21I GWGCWC 1 cut(s) 1065
Alw26I GTCTC 2 cut(s) 320, 977
AlwI GGATC 2 cut(s) 325, 430
AlwNI CAGNNNCTG 1 cut(s) 665
AoxI GGCC 3 cut(s) 646, 652, 762
ApeKI GCWGC 2 cut(s) 395, 740
ApoI RAATTY 2 cut(s) 533, 746
Asp700I GAANNNNTTC 1 cut(s) 549
AspA2I CCTAGG 1 cut(s) 649
AspLEI GCGC 1 cut(s) 395
AsuHPI GGTGA 4 cut(s) 19, 30, 594, 896
AvrII CCTAGG 1 cut(s) 649
BanII GRGCYC 1 cut(s) 1065
BbrPI CACGTG 1 cut(s) 146
Bbv12I GWGCWC 1 cut(s) 1065
BbvI GCAGC 2 cut(s) 382, 727
BccI CCATC 5 cut(s) 43, 288, 308, 419, 473
BceAI ACGGC 2 cut(s) 188, 575
BciT130I CCWGG 2 cut(s) 153, 246
BciVI GTATCC 1 cut(s) 150
BcoDI GTCTC 2 cut(s) 320, 977
BfaI CTAG 4 cut(s) 650, 695, 852, 860
BfmI CTRYAG 1 cut(s) 1005
BfuAI ACCTGC 2 cut(s) 45, 407
BfuI GTATCC 1 cut(s) 150
BisI GCNGC 4 cut(s) 391, 396, 444, 741
BlnI CCTAGG 1 cut(s) 649
BlsI GCNGC 4 cut(s) 392, 397, 445, 742
Bme1390I CCNGG 2 cut(s) 153, 246
BmrFI CCNGG 2 cut(s) 153, 246
BmsI GCATC 3 cut(s) 297, 613, 877
BpuEI CTTGAG 1 cut(s) 306
Bsa29I ATCGAT 1 cut(s) 462
BsaAI YACGTR 1 cut(s) 146
BsaHI GRCGYC 3 cut(s) 201, 346, 567
BsaJI CCNNGG 2 cut(s) 152, 649
Bsc4I CCNNNNNNNGG 4 cut(s) 251, 934, 1010, 1033
BseBI CCWGG 2 cut(s) 153, 246
BseCI ATCGAT 1 cut(s) 462
BseDI CCNNGG 2 cut(s) 152, 649
BseGI GGATG 2 cut(s) 172, 1063
BseLI CCNNNNNNNGG 4 cut(s) 251, 934, 1010, 1033
BseMII CTCAG 2 cut(s) 383, 740
BseXI GCAGC 2 cut(s) 382, 727
Bsh1236I CGCG 2 cut(s) 393, 759
Bsh1285I CGRYCG 2 cut(s) 493, 910
BshFI GGCC 3 cut(s) 648, 654, 764
BshVI ATCGAT 1 cut(s) 462
BsiEI CGRYCG 2 cut(s) 493, 910
BsiHKAI GWGCWC 1 cut(s) 1065
BsiWI CGTACG 1 cut(s) 903
BslI CCNNNNNNNGG 4 cut(s) 251, 934, 1010, 1033
BsmAI GTCTC 2 cut(s) 320, 977
BsmI GAATGC 1 cut(s) 961
BsnI GGCC 3 cut(s) 648, 654, 764
Bsp1286I GDGCHC 1 cut(s) 1065
Bsp143I GATC 4 cut(s) 317, 435, 463, 490
BspACI CCGC 6 cut(s) 5, 249, 391, 443, 641, 1068
BspANI GGCC 3 cut(s) 648, 654, 764
BspCNI CTCAG 2 cut(s) 382, 739
BspDI ATCGAT 1 cut(s) 462
BspFNI CGCG 2 cut(s) 393, 759
BspHI TCATGA 1 cut(s) 795
BspMI ACCTGC 2 cut(s) 45, 407
BspPI GGATC 2 cut(s) 325, 430
BssECI CCNNGG 2 cut(s) 152, 649
BssMI GATC 4 cut(s) 317, 435, 463, 490
BssNAI GTATAC 1 cut(s) 134
BssNI GRCGYC 3 cut(s) 201, 346, 567
BssT1I CCWWGG 1 cut(s) 649
Bst1107I GTATAC 1 cut(s) 134
Bst2UI CCWGG 2 cut(s) 153, 246
Bst4CI ACNGT 4 cut(s) 138, 509, 527, 908
Bst6I CTCTTC 1 cut(s) 38
BstACI GRCGYC 3 cut(s) 201, 346, 567
BstBAI YACGTR 1 cut(s) 146
BstC8I GCNNGC 3 cut(s) 113, 519, 708
BstDEI CTNAG 2 cut(s) 369, 726
BstF5I GGATG 2 cut(s) 172, 1063
BstFNI CGCG 2 cut(s) 393, 759
BstHHI GCGC 1 cut(s) 395
BstKTI GATC 4 cut(s) 320, 438, 466, 493
BstMAI GTCTC 2 cut(s) 320, 977
BstMBI GATC 4 cut(s) 317, 435, 463, 490
BstMCI CGRYCG 2 cut(s) 493, 910
BstMWI GCNNNNNNNGC 5 cut(s) 209, 404, 413, 575, 679
BstNI CCWGG 2 cut(s) 153, 246
BstSCI CCNGG 2 cut(s) 151, 244
BstSFI CTRYAG 1 cut(s) 1005
BstUI CGCG 2 cut(s) 393, 759
BstV1I GCAGC 2 cut(s) 382, 727
BstX2I RGATCY 2 cut(s) 317, 435
BstYI RGATCY 2 cut(s) 317, 435
BstZ17I GTATAC 1 cut(s) 134
Bsu15I ATCGAT 1 cut(s) 462
BsuI GTATCC 1 cut(s) 150
BsuRI GGCC 3 cut(s) 648, 654, 764
BsuTUI ATCGAT 1 cut(s) 462
BtsCI GGATG 2 cut(s) 172, 1063
BtsI GCAGTG 2 cut(s) 448, 666
BtsIMutI CAGTG 2 cut(s) 448, 666
BveI ACCTGC 2 cut(s) 45, 407
Cac8I GCNNGC 3 cut(s) 113, 519, 708
CaiI CAGNNNCTG 1 cut(s) 665
CciI TCATGA 1 cut(s) 795
CfoI GCGC 1 cut(s) 395
ClaI ATCGAT 1 cut(s) 462
CseI GACGC 4 cut(s) 209, 354, 575, 765
Csp6I GTAC 4 cut(s) 505, 825, 904, 1015
CviAII CATG 6 cut(s) 183, 440, 620, 719, 796, 832
CviQI GTAC 4 cut(s) 505, 825, 904, 1015
DdeI CTNAG 2 cut(s) 369, 726
DpnI GATC 4 cut(s) 319, 437, 465, 492
DpnII GATC 4 cut(s) 317, 435, 463, 490
EaeI YGGCCR 1 cut(s) 762
Eam1104I CTCTTC 1 cut(s) 38
EarI CTCTTC 1 cut(s) 38
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 1063
Eco130I CCWWGG 1 cut(s) 649
Eco147I AGGCCT 1 cut(s) 654
Eco24I GRGCYC 1 cut(s) 1065
Eco53kI GAGCTC 1 cut(s) 1063
Eco72I CACGTG 1 cut(s) 146
EcoICRI GAGCTC 1 cut(s) 1063
EcoRI GAATTC 1 cut(s) 746
EcoRII CCWGG 2 cut(s) 151, 244
EcoT14I CCWWGG 1 cut(s) 649
EcoT38I GRGCYC 1 cut(s) 1065
ErhI CCWWGG 1 cut(s) 649
FaeI CATG 6 cut(s) 186, 443, 623, 722, 799, 835
FaiI YATR 9 cut(s) 134, 184, 441, 621, 690, 720, 797, 833, 975
FatI CATG 6 cut(s) 182, 439, 619, 718, 795, 831
FauI CCCGC 2 cut(s) 242, 648
FblI GTMKAC 2 cut(s) 133, 198
Fnu4HI GCNGC 4 cut(s) 391, 396, 444, 741
FokI GGATG 2 cut(s) 179, 1070
FriOI GRGCYC 1 cut(s) 1065
Fsp4HI GCNGC 4 cut(s) 391, 396, 444, 741
FspBI CTAG 4 cut(s) 650, 695, 852, 860
GlaI GCGC 1 cut(s) 394
GluI GCNGC 4 cut(s) 391, 396, 444, 741
HaeIII GGCC 3 cut(s) 648, 654, 764
HgaI GACGC 4 cut(s) 209, 354, 575, 765
HhaI GCGC 1 cut(s) 395
Hin1I GRCGYC 3 cut(s) 201, 346, 567
Hin1II CATG 6 cut(s) 186, 443, 623, 722, 799, 835
Hin6I GCGC 1 cut(s) 393
HinP1I GCGC 1 cut(s) 393
HincII GTYRAC 1 cut(s) 565
HindII GTYRAC 1 cut(s) 565
HindIII AAGCTT 2 cut(s) 680, 813
HinfI GANTC 8 cut(s) 8, 24, 85, 483, 597, 632, 735, 767
HphI GGTGA 4 cut(s) 19, 30, 594, 896
Hpy166II GTNNAC 6 cut(s) 134, 199, 208, 238, 565, 1017
Hpy188I TCNGA 6 cut(s) 99, 125, 306, 372, 596, 637
Hpy188III TCNNGA 7 cut(s) 82, 323, 472, 538, 776, 796, 1034
Hpy8I GTNNAC 6 cut(s) 134, 199, 208, 238, 565, 1017
Hpy99I CGWCG 1 cut(s) 348
HpyCH4III ACNGT 4 cut(s) 138, 509, 527, 908
HpyCH4IV ACGT 1 cut(s) 145
HpyCH4V TGCA 4 cut(s) 407, 521, 531, 659
HpyF10VI GCNNNNNNNGC 5 cut(s) 209, 404, 413, 575, 679
HpyF3I CTNAG 2 cut(s) 369, 726
HpySE526I ACGT 1 cut(s) 145
Hsp92I GRCGYC 3 cut(s) 201, 346, 567
Hsp92II CATG 6 cut(s) 186, 443, 623, 722, 799, 835
HspAI GCGC 1 cut(s) 393
Kzo9I GATC 4 cut(s) 317, 435, 463, 490
LmnI GCTCC 1 cut(s) 964
Lsp1109I GCAGC 2 cut(s) 382, 727
LweI GCATC 3 cut(s) 297, 613, 877
MaeI CTAG 4 cut(s) 650, 695, 852, 860
MaeII ACGT 1 cut(s) 145
MaeIII GTNAC 2 cut(s) 661, 721
MalI GATC 4 cut(s) 319, 437, 465, 492
MboI GATC 4 cut(s) 317, 435, 463, 490
MboII GAAGA 3 cut(s) 3, 25, 258
MflI RGATCY 2 cut(s) 317, 435
MhlI GDGCHC 1 cut(s) 1065
MluCI AATT 6 cut(s) 429, 467, 533, 546, 746, 791
MluI ACGCGT 1 cut(s) 757
MlyI GAGTC 4 cut(s) 18, 79, 626, 776
MmeI TCCRAC 1 cut(s) 113
MroXI GAANNNNTTC 1 cut(s) 549
MseI TTAA 2 cut(s) 401, 948
MspR9I CCNGG 2 cut(s) 153, 246
Mva1269I GAATGC 1 cut(s) 961
MvaI CCWGG 2 cut(s) 153, 246
MvnI CGCG 2 cut(s) 393, 759
MwoI GCNNNNNNNGC 5 cut(s) 209, 404, 413, 575, 679
NdeII GATC 4 cut(s) 317, 435, 463, 490
NlaIII CATG 6 cut(s) 186, 443, 623, 722, 799, 835
NmeAIII GCCGAG 1 cut(s) 790
NmuCI GTSAC 1 cut(s) 661
PagI TCATGA 1 cut(s) 795
PceI AGGCCT 1 cut(s) 654
PcsI WCGNNNNNNNCGW 1 cut(s) 357
PctI GAATGC 1 cut(s) 961
PdmI GAANNNNTTC 1 cut(s) 549
PfeI GAWTC 4 cut(s) 8, 483, 597, 735
Pfl23II CGTACG 1 cut(s) 903
PkrI GCNGC 4 cut(s) 392, 397, 445, 742
Ple19I CGATCG 1 cut(s) 493
PleI GAGTC 4 cut(s) 18, 79, 626, 775
PmaCI CACGTG 1 cut(s) 146
PmlI CACGTG 1 cut(s) 146
PpsI GAGTC 4 cut(s) 18, 79, 626, 775
Ppu21I YACGTR 1 cut(s) 146
Psp124BI GAGCTC 1 cut(s) 1065
Psp6I CCWGG 2 cut(s) 151, 244
PspCI CACGTG 1 cut(s) 146
PspGI CCWGG 2 cut(s) 151, 244
PspLI CGTACG 1 cut(s) 903
PsrI GAACNNNNNNTAC 2 cut(s) 189, 221
PstNI CAGNNNCTG 1 cut(s) 665
PsuI RGATCY 2 cut(s) 317, 435
PvuI CGATCG 1 cut(s) 493
RsaI GTAC 4 cut(s) 506, 826, 905, 1016
RsaNI GTAC 4 cut(s) 505, 825, 904, 1015
SacI GAGCTC 1 cut(s) 1065
SaqAI TTAA 2 cut(s) 401, 948
SatI GCNGC 4 cut(s) 391, 396, 444, 741
Sau3AI GATC 4 cut(s) 317, 435, 463, 490
SchI GAGTC 4 cut(s) 18, 79, 626, 776
ScrFI CCNGG 2 cut(s) 153, 246
SduI GDGCHC 1 cut(s) 1065
SfaNI GCATC 3 cut(s) 297, 613, 877
SfcI CTRYAG 1 cut(s) 1005
SmlI CTYRAG 1 cut(s) 321
SmoI CTYRAG 1 cut(s) 321
Sse9I AATT 6 cut(s) 429, 467, 533, 546, 746, 791
SseBI AGGCCT 1 cut(s) 654
SsiI CCGC 6 cut(s) 5, 249, 391, 443, 641, 1068
SspMI CTAG 4 cut(s) 650, 695, 852, 860
SstI GAGCTC 1 cut(s) 1065
StuI AGGCCT 1 cut(s) 654
StyD4I CCNGG 2 cut(s) 151, 244
StyI CCWWGG 1 cut(s) 649
TaaI ACNGT 4 cut(s) 138, 509, 527, 908
TaiI ACGT 1 cut(s) 148
TaqI TCGA 6 cut(s) 343, 351, 412, 462, 493, 733
TasI AATT 6 cut(s) 429, 467, 533, 546, 746, 791
TauI GCSGC 2 cut(s) 393, 446
TfiI GAWTC 4 cut(s) 8, 483, 597, 735
Tru1I TTAA 2 cut(s) 401, 948
Tru9I TTAA 2 cut(s) 401, 948
TscAI CASTG 2 cut(s) 455, 666
TseFI GTSAC 1 cut(s) 661
TseI GCWGC 2 cut(s) 395, 740
Tsp45I GTSAC 1 cut(s) 661
TspDTI ATGAA 3 cut(s) 183, 784, 820
TspGWI ACGGA 3 cut(s) 179, 644, 768
TspRI CASTG 2 cut(s) 455, 666
XapI RAATTY 2 cut(s) 533, 746
XmaJI CCTAGG 1 cut(s) 649
XmiI GTMKAC 2 cut(s) 133, 198
XmnI GAANNNNTTC 1 cut(s) 549
XspI CTAG 4 cut(s) 650, 695, 852, 860
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.