Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00129

Orthogroup ID

OG0000870

Physical Location & Seq

Genomic Coordinates Reverse (-)

25234 .. 27460

Gene Structure 2227 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G003560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGTTGTTATCTAAGTTTCCACATGTTCCTGGGATTTACACAGATGAACAGGTTGAGGCATGGAAGAAGGTGGTCGATGCTGTTCACACCAAAGGTGCCATCATTTTCTGTCAACTTTGGCATGTCGGTCGTGCTTCTCATCAAGTTCTTCAACCTGGTGGGGGATCACCAATTTCTTCAACCAACAACCCCATCTCAAAGAGATGGAAAGTTCTCTTGCCAGATGGGTCTCATGACGCTTACCCTGAACCTCGACGCCTCGAGACCCACGAAATACCCCAGATCGTTGAGCAGTATCGCCACGCTGCCTTGAATGCCATTCGCGCAGGTTTTGATGGAATTGAGATCCATTCTGCACATGGCTACCTCATCGATCAATTCTTGAAAGATGGGATCAACGATCGAACTGATGAGTATGGTGGGTCGCTTGAAAACCGCTGCAAGTTCTTGATCGAAACTGTTCAAGCAGTAGTTGAAGCCGTTGGTGCTGATAGAGTTGCTGTTAGAATATCACCAGCTATTGATCACCTTGACGCTATTGATTCCGACCCAATTGGCCTAGGCTTGGCAGTGATTGAAAGACTCAACAAGCTTCAACAAAACGTAGGCTCAAGGCTTGCTTATCTTCATGTGACTCAGCCTCGTTTCGCAGCTCATGGACAAGTAGAGTTTGATCAAGACGAAGCTCGGTTCATGAGGACTCTGAGAAAAGCTTATGAGGGTACATTCATGGCTAGTGGAGGATTCACCAGAGAGCTAGGAATGGATGCTGTGGCTTCCAGTGATACTGATTTGGTGTCGTATGGTCGCCAGTTTATCTCAAACCCTGACTTGGTTTTGAGATTTAAGCTGAATGCTCCTTTGAATAAGTATAATAGGGAGACTTTCTACACCCATGACCCTGTTGTTGGGTACACAGACTATCCTTTCCTAAACAGTGAAAGTGTGAACGAGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009605 GO:0009607 GO:0009620 GO:0009694 GO:0009695 GO:0009791 GO:0009908 GO:0009987 GO:0010035 GO:0010193 GO:0010817 GO:0016053 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0019752 GO:0022414 GO:0031407 GO:0031408 GO:0032501 GO:0032502 GO:0032787 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042579 GO:0042802 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046677 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0055114 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0090567 GO:0099402 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

319

Amino Acids

35.67

Weight (kDa)

5.8

Isoelectric Point (pI)

34.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_FMN	PF00724	6 - 288	5.2e-69	NADH:flavin oxidoreductase / NADH oxidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06050 AT2G06050 AT2G06050
fragaria_vesca	FvH4_1g08451 FvH4_1g08452 FvH4_1g08453 FvH4_1g08454 FvH4_1g08510 FvH4_1g08510 FvH4_1g08510 FvH4_1g08510
malus_domestica	MD00G1142600.v1.1 MD02G1089100.v1.1 MD12G1067300.v1.1 MD15G1216200.v1.1
prunus_persica	Prupe.7G200800_v2.0.a1
pyrus_communis	pycom02g07130 pycom15g19180
rosa_chinensis	RchiOBHm_Chr2g0094561 RchiOBHm_Chr2g0094611 RchiOBHm_Chr2g0094631 RchiOBHm_Chr2g0094641 RchiOBHm_Chr2g0150041 RchiOBHm_Chr7g0211621 RchiOBHm_Chr7g0230281
rosa_laevigata	RLG00000002990 RLG00000016504 RLG00000016506 RLG00000016507 RLG00000020462
rosa_multiflora	Rmu_co8133296.1_g000001 Rmu_co8390375.1_g000001 Rmu_sc0003760.1_g000017 Rmu_sc0004232.1_g000012 Rmu_sc0004359.1_g000033 Rmu_sc0004359.1_g000036 Rmu_sc0006422.1_g000001 Rmu_sc0009445.1_g000018 Rmu_sc0017068.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097490 Rroxscaffold_2G00147030 Rroxscaffold_2G00147040 Rroxscaffold_2G00147050 Rroxscaffold_3G00247670
rosa_rugosa	Rorug02G0045400 Rorug02G0045400 Rorug02G0045600 Rorug02G0045700 Rorug02G0418000 Rorug07G0126300
rosa_samantha	Rh2AG093100 Rh2BG093400 Rh2BG093700 Rh2BG489500 Rh2CG095800 Rh2CG096000 Rh2DG092200 Rh2DG092400 Rh7AG259000 Rh7BG253300 Rh7CG276100 Rh7DG266600
rosa_wichuraiana	Rw0G003550 Rw0G003560 Rw2G038940 Rw7G022140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	317
AccB1I	GGYRCC	1 cut(s)	95
AccII	CGCG	1 cut(s)	324
AciI	CCGC	1 cut(s)	436
AclWI	GGATC	3 cut(s)	172, 340, 401
AcyI	GRCGYC	1 cut(s)	256
AfaI	GTAC	2 cut(s)	724, 914
AfiI	CCNNNNNNNGG	4 cut(s)	161, 565, 832, 908
AflIII	ACRYGT	1 cut(s)	22
AjnI	CCWGG	2 cut(s)	28, 154
AluBI	AGCT	7 cut(s)	518, 592, 653, 686, 713, 757, 850
AluI	AGCT	7 cut(s)	518, 592, 653, 686, 713, 757, 850
Alw26I	GTCTC	3 cut(s)	234, 257, 875
AlwI	GGATC	3 cut(s)	172, 340, 401
Ama87I	CYCGRG	1 cut(s)	260
AoxI	GGCC	1 cut(s)	556
ApeKI	GCWGC	3 cut(s)	305, 438, 650
Asp700I	GAANNNNTTC	1 cut(s)	459
AspA2I	CCTAGG	1 cut(s)	559
AspLEI	GCGC	1 cut(s)	326
AsuHPI	GGTGA	4 cut(s)	159, 504, 518, 739
AvaI	CYCGRG	1 cut(s)	260
AvrII	CCTAGG	1 cut(s)	559
BanI	GGYRCC	1 cut(s)	95
BbvI	GCAGC	3 cut(s)	292, 425, 662
BccI	CCATC	6 cut(s)	107, 198, 200, 218, 329, 383
BceAI	ACGGC	1 cut(s)	464
BcgI	CGANNNNNNTGC	2 cut(s)	110, 144
BciT130I	CCWGG	2 cut(s)	30, 156
BclI	TGATCA	2 cut(s)	523, 673
BcoDI	GTCTC	3 cut(s)	234, 257, 875
BfaI	CTAG	3 cut(s)	560, 735, 758
BfuAI	ACCTGC	1 cut(s)	317
BisI	GCNGC	3 cut(s)	306, 439, 651
BlnI	CCTAGG	1 cut(s)	559
BlsI	GCNGC	3 cut(s)	307, 440, 652
Bme1390I	CCNGG	2 cut(s)	30, 156
BmeT110I	CYCGRG	1 cut(s)	260
BmiI	GGNNCC	1 cut(s)	97
BmrFI	CCNGG	2 cut(s)	30, 156
BmsI	GCATC	2 cut(s)	67, 757
BpuEI	CTTGAG	1 cut(s)	595
Bsa29I	ATCGAT	1 cut(s)	372
BsaHI	GRCGYC	1 cut(s)	256
BsaI	GGTCTC	2 cut(s)	234, 257
BsaJI	CCNNGG	2 cut(s)	29, 559
Bsc4I	CCNNNNNNNGG	4 cut(s)	161, 565, 832, 908
Bse1I	ACTGG	2 cut(s)	780, 811
BseBI	CCWGG	2 cut(s)	30, 156
BseCI	ATCGAT	1 cut(s)	372
BseDI	CCNNGG	2 cut(s)	29, 559
BseGI	GGATG	1 cut(s)	772
BseLI	CCNNNNNNNGG	4 cut(s)	161, 565, 832, 908
BseMII	CTCAG	2 cut(s)	650, 695
BseNI	ACTGG	2 cut(s)	780, 811
BseXI	GCAGC	3 cut(s)	292, 425, 662
BsgI	GTGCAG	1 cut(s)	339
Bsh1236I	CGCG	1 cut(s)	324
Bsh1285I	CGRYCG	2 cut(s)	130, 403
BshFI	GGCC	1 cut(s)	558
BshNI	GGYRCC	1 cut(s)	95
BshVI	ATCGAT	1 cut(s)	372
BsiEI	CGRYCG	2 cut(s)	130, 403
BsiHKCI	CYCGRG	1 cut(s)	260
BslI	CCNNNNNNNGG	4 cut(s)	161, 565, 832, 908
BsmAI	GTCTC	3 cut(s)	234, 257, 875
BsmI	GAATGC	2 cut(s)	319, 859
BsnI	GGCC	1 cut(s)	558
Bso31I	GGTCTC	2 cut(s)	234, 257
BsoBI	CYCGRG	1 cut(s)	260
Bsp143I	GATC	9 cut(s)	164, 282, 345, 373, 393, 400, 450, 523, 673
BspACI	CCGC	1 cut(s)	436
BspANI	GGCC	1 cut(s)	558
BspCNI	CTCAG	2 cut(s)	649, 696
BspDI	ATCGAT	1 cut(s)	372
BspFNI	CGCG	1 cut(s)	324
BspHI	TCATGA	2 cut(s)	232, 693
BspLI	GGNNCC	1 cut(s)	97
BspMI	ACCTGC	1 cut(s)	317
BspPI	GGATC	3 cut(s)	172, 340, 401
BspT107I	GGYRCC	1 cut(s)	95
BspTNI	GGTCTC	2 cut(s)	234, 257
BsrI	ACTGG	2 cut(s)	780, 811
BssECI	CCNNGG	2 cut(s)	29, 559
BssMI	GATC	9 cut(s)	164, 282, 345, 373, 393, 400, 450, 523, 673
BssNI	GRCGYC	1 cut(s)	256
BssT1I	CCWWGG	1 cut(s)	559
Bst2UI	CCWGG	2 cut(s)	30, 156
Bst4CI	ACNGT	2 cut(s)	460, 938
BstACI	GRCGYC	1 cut(s)	256
BstC8I	GCNNGC	1 cut(s)	618
BstDEI	CTNAG	3 cut(s)	12, 636, 704
BstF5I	GGATG	1 cut(s)	772
BstFNI	CGCG	1 cut(s)	324
BstHHI	GCGC	1 cut(s)	326
BstKTI	GATC	9 cut(s)	167, 285, 348, 376, 396, 403, 453, 526, 676
BstMAI	GTCTC	3 cut(s)	234, 257, 875
BstMBI	GATC	9 cut(s)	164, 282, 345, 373, 393, 400, 450, 523, 673
BstMCI	CGRYCG	2 cut(s)	130, 403
BstMWI	GCNNNNNNNGC	3 cut(s)	314, 323, 485
BstNI	CCWGG	2 cut(s)	30, 156
BstNSI	RCATGY	2 cut(s)	26, 125
BstSCI	CCNGG	2 cut(s)	28, 154
BstUI	CGCG	1 cut(s)	324
BstV1I	GCAGC	3 cut(s)	292, 425, 662
BstX2I	RGATCY	1 cut(s)	345
BstYI	RGATCY	1 cut(s)	345
Bsu15I	ATCGAT	1 cut(s)	372
BsuRI	GGCC	1 cut(s)	558
BsuTUI	ATCGAT	1 cut(s)	372
BtsCI	GGATG	1 cut(s)	772
BtsI	GCAGTG	1 cut(s)	576
BtsIMutI	CAGTG	3 cut(s)	576, 787, 943
BveI	ACCTGC	1 cut(s)	317
Cac8I	GCNNGC	1 cut(s)	618
CciI	TCATGA	2 cut(s)	232, 693
CfoI	GCGC	1 cut(s)	326
ClaI	ATCGAT	1 cut(s)	372
CseI	GACGC	3 cut(s)	245, 264, 542
CsiI	ACCWGGT	1 cut(s)	154
Csp6I	GTAC	2 cut(s)	723, 913
CviQI	GTAC	2 cut(s)	723, 913
DdeI	CTNAG	3 cut(s)	12, 636, 704
DpnI	GATC	9 cut(s)	166, 284, 347, 375, 395, 402, 452, 525, 675
DpnII	GATC	9 cut(s)	164, 282, 345, 373, 393, 400, 450, 523, 673
Eco130I	CCWWGG	1 cut(s)	559
Eco31I	GGTCTC	2 cut(s)	234, 257
Eco88I	CYCGRG	1 cut(s)	260
EcoRII	CCWGG	2 cut(s)	28, 154
EcoT14I	CCWWGG	1 cut(s)	559
ErhI	CCWWGG	1 cut(s)	559
FalI	AAGNNNNNCTT	2 cut(s)	604, 636
FbaI	TGATCA	2 cut(s)	523, 673
Fnu4HI	GCNGC	3 cut(s)	306, 439, 651
FokI	GGATG	1 cut(s)	779
Fsp4HI	GCNGC	3 cut(s)	306, 439, 651
FspBI	CTAG	3 cut(s)	560, 735, 758
GlaI	GCGC	1 cut(s)	325
GluI	GCNGC	3 cut(s)	306, 439, 651
HaeIII	GGCC	1 cut(s)	558
HgaI	GACGC	3 cut(s)	245, 264, 542
HhaI	GCGC	1 cut(s)	326
Hin1I	GRCGYC	1 cut(s)	256
Hin6I	GCGC	1 cut(s)	324
HinP1I	GCGC	1 cut(s)	324
HincII	GTYRAC	1 cut(s)	113
HindII	GTYRAC	1 cut(s)	113
HindIII	AAGCTT	2 cut(s)	590, 711
HinfI	GANTC	5 cut(s)	542, 582, 634, 700, 744
HphI	GGTGA	4 cut(s)	159, 504, 518, 739
Hpy166II	GTNNAC	4 cut(s)	85, 113, 915, 949
Hpy188I	TCNGA	2 cut(s)	547, 705
Hpy188III	TCNNGA	6 cut(s)	233, 262, 382, 448, 677, 694
Hpy8I	GTNNAC	4 cut(s)	85, 113, 915, 949
Hpy99I	CGWCG	1 cut(s)	258
HpyAV	CCTTC	1 cut(s)	61
HpyCH4III	ACNGT	2 cut(s)	460, 938
HpyCH4IV	ACGT	1 cut(s)	603
HpyCH4V	TGCA	2 cut(s)	356, 441
HpyF10VI	GCNNNNNNNGC	3 cut(s)	314, 323, 485
HpyF3I	CTNAG	3 cut(s)	12, 636, 704
HpySE526I	ACGT	1 cut(s)	603
Hsp92I	GRCGYC	1 cut(s)	256
HspAI	GCGC	1 cut(s)	324
Ksp22I	TGATCA	2 cut(s)	523, 673
Kzo9I	GATC	9 cut(s)	164, 282, 345, 373, 393, 400, 450, 523, 673
LmnI	GCTCC	1 cut(s)	862
Lsp1109I	GCAGC	3 cut(s)	292, 425, 662
LweI	GCATC	2 cut(s)	67, 757
MabI	ACCWGGT	1 cut(s)	154
MaeI	CTAG	3 cut(s)	560, 735, 758
MaeII	ACGT	1 cut(s)	603
MaeIII	GTNAC	1 cut(s)	631
MalI	GATC	9 cut(s)	166, 284, 347, 375, 395, 402, 452, 525, 675
MboI	GATC	9 cut(s)	164, 282, 345, 373, 393, 400, 450, 523, 673
MboII	GAAGA	4 cut(s)	76, 140, 168, 617
MfeI	CAATTG	1 cut(s)	552
MflI	RGATCY	1 cut(s)	345
MluCI	AATT	5 cut(s)	171, 339, 377, 552, 955
MlyI	GAGTC	3 cut(s)	576, 628, 694
MmeI	TCCRAC	1 cut(s)	570
MnlI	CCTC	8 cut(s)	49, 261, 269, 377, 651, 690, 712, 734
MroXI	GAANNNNTTC	1 cut(s)	459
MseI	TTAA	1 cut(s)	846
MspA1I	CMGCKG	1 cut(s)	438
MspR9I	CCNGG	2 cut(s)	30, 156
MunI	CAATTG	1 cut(s)	552
Mva1269I	GAATGC	2 cut(s)	319, 859
MvaI	CCWGG	2 cut(s)	30, 156
MvnI	CGCG	1 cut(s)	324
MwoI	GCNNNNNNNGC	3 cut(s)	314, 323, 485
NdeII	GATC	9 cut(s)	164, 282, 345, 373, 393, 400, 450, 523, 673
NlaIV	GGNNCC	1 cut(s)	97
NmuCI	GTSAC	1 cut(s)	631
NspI	RCATGY	2 cut(s)	26, 125
PaeR7I	CTCGAG	1 cut(s)	260
PagI	TCATGA	2 cut(s)	232, 693
PciI	ACATGT	1 cut(s)	22
PcsI	WCGNNNNNNNCGW	1 cut(s)	267
PctI	GAATGC	2 cut(s)	319, 859
PdmI	GAANNNNTTC	1 cut(s)	459
PfeI	GAWTC	2 cut(s)	542, 744
PkrI	GCNGC	3 cut(s)	307, 440, 652
Ple19I	CGATCG	1 cut(s)	403
PleI	GAGTC	3 cut(s)	576, 628, 694
PpsI	GAGTC	3 cut(s)	576, 628, 694
PscI	ACATGT	1 cut(s)	22
Psp6I	CCWGG	2 cut(s)	28, 154
PspGI	CCWGG	2 cut(s)	28, 154
PspN4I	GGNNCC	1 cut(s)	97
PsuI	RGATCY	1 cut(s)	345
PvuI	CGATCG	1 cut(s)	403
RsaI	GTAC	2 cut(s)	724, 914
RsaNI	GTAC	2 cut(s)	723, 913
SaqAI	TTAA	1 cut(s)	846
SatI	GCNGC	3 cut(s)	306, 439, 651
Sau3AI	GATC	9 cut(s)	164, 282, 345, 373, 393, 400, 450, 523, 673
SchI	GAGTC	3 cut(s)	576, 628, 694
ScrFI	CCNGG	2 cut(s)	30, 156
SexAI	ACCWGGT	1 cut(s)	154
SfaNI	GCATC	2 cut(s)	67, 757
Sfr274I	CTCGAG	1 cut(s)	260
SlaI	CTCGAG	1 cut(s)	260
SmlI	CTYRAG	2 cut(s)	260, 610
SmoI	CTYRAG	2 cut(s)	260, 610
Sse9I	AATT	5 cut(s)	171, 339, 377, 552, 955
SsiI	CCGC	1 cut(s)	436
SspMI	CTAG	3 cut(s)	560, 735, 758
StyD4I	CCNGG	2 cut(s)	28, 154
StyI	CCWWGG	1 cut(s)	559
TaaI	ACNGT	2 cut(s)	460, 938
TaiI	ACGT	1 cut(s)	606
TaqI	TCGA	6 cut(s)	75, 253, 261, 372, 403, 453
TaqII	GACCGA	1 cut(s)	116
TasI	AATT	5 cut(s)	171, 339, 377, 552, 955
TfiI	GAWTC	2 cut(s)	542, 744
Tru1I	TTAA	1 cut(s)	846
Tru9I	TTAA	1 cut(s)	846
TscAI	CASTG	3 cut(s)	576, 787, 943
TseFI	GTSAC	1 cut(s)	631
TseI	GCWGC	3 cut(s)	305, 438, 650
Tsp45I	GTSAC	1 cut(s)	631
TspDTI	ATGAA	4 cut(s)	60, 617, 682, 718
TspRI	CASTG	3 cut(s)	576, 787, 943
XceI	RCATGY	2 cut(s)	26, 125
XcmI	CCANNNNNNNNNTGG	1 cut(s)	356
XhoI	CTCGAG	1 cut(s)	260
XmaJI	CCTAGG	1 cut(s)	559
XmnI	GAANNNNTTC	1 cut(s)	459
XspI	CTAG	3 cut(s)	560, 735, 758

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.