AT2G06050

12-oxophytodienoate reductase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
2359114 .. 2362375
3262 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G06050.2

Sequence Viewer

Length: 1176 bp
ATGACGGCGGCACAAGGGAACTCTAACGAGACTCTGTTTTCTTCTTACAAGATGGGAAGATTCGATCTCTCTCATCGAGTGGTTCTGGCGCCGATGACGCGGTGCAGGGCGTTGAACGGAGTACCAAACGCGGCGTTGGCAGAGTATTATGCTCAACGGACCACTCCCGGCGGTTTTCTCATCTCCGAAGGCACCATGGTCTCTCCCGGATCCGCAGGGTTCCCACATGTGCCTGGAATCTATTCAGATGAACAAGTAGAAGCATGGAAGCAAGTTGTGGAAGCAGTTCACGCTAAGGGAGGTTTCATCTTTTGTCAATTATGGCATGTTGGACGTGCTTCTCATGCAGTGTATCAACCTAATGGAGGATCACCAATATCGTCAACGAACAAACCAATCTCGGAAAACAGGTGGCGAGTTTTGTTGCCCGATGGTTCCCACGTGAAGTACCCGAAACCTCGGGCTTTAGAAGCTTCCGAGATACCTCGGGTGGTGGAGGATTATTGCCTTTCTGCTTTGAATGCGATTCGAGCTGGTTTCGATGGGATTGAGATCCACGGGGCGCATGGTTACCTTATTGATCAGTTTTTGAAAGATGGGATCAATGACCGTACTGACCAATACGGAGGATCCATTGCAAACCGTTGTAGATTCTTGAAACAAGTAGTGGAAGGTGTAGTTTCAGCCATAGGAGCTAGTAAAGTTGGTGTGAGGGTATCTCCGGCTATAGATCACTTGGACGCAACTGATTCTGACCCACTATCACTCGGGCTAGCCGTGGTTGGCATGCTCAATAAGTTACAAGGTGTTAATGGCTCAAAGCTCGCTTACCTTCACGTTACACAACCTCGCTACCACGCCTACGGGCAAACAGAGTCTGGAAGGCAAGGGAGTGATGAGGAAGAAGCTAAGCTAATGAAGAGCTTGAGGATGGCTTATAATGGAACCTTTATGTCTAGTGGAGGATTCAATAAGGAACTAGGTATGCAAGCTGTTCAACAAGGTGATGCTGATTTGGTTTCATATGGCAGACTGTTTATCGCAAACCCGGATTTGGTTTCGCGGTTCAAGATTGATGGAGAGTTGAATAAATATAATCGGAAGACGTTTTACACTCAAGATCCAGTTGTTGGCTACACGGATTATCCTTTCTTGGCTCCTTTTTCCCGCCTCTGA

Protein Analysis

391

Amino Acids

42.69

Weight (kDa)

7.71

Isoelectric Point (pI)

33.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Oxidored_FMN PF00724 12 - 358 1.6e-81 NADH:flavin oxidoreductase / NADH oxidase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 939
AccB1I GGYRCC 2 cut(s) 88, 191
AccB7I CCANNNNNTGG 1 cut(s) 1130
AccII CGCG 3 cut(s) 100, 131, 1063
AciI CCGC 7 cut(s) 8, 100, 131, 171, 213, 1063, 1168
AclWI GGATC 8 cut(s) 204, 217, 376, 547, 608, 624, 637, 1115
AcvI CACGTG 1 cut(s) 442
AcyI GRCGYC 1 cut(s) 89
AfaI GTAC 3 cut(s) 123, 449, 613
AfiI CCNNNNNNNGG 3 cut(s) 365, 1054, 1130
AflIII ACRYGT 1 cut(s) 226
AgsI TTSAA 8 cut(s) 115, 520, 592, 658, 970, 998, 1069, 1087
AjiI CACGTC 1 cut(s) 335
AjnI CCWGG 1 cut(s) 232
AluBI AGCT 8 cut(s) 473, 533, 695, 823, 908, 913, 924, 992
AluI AGCT 8 cut(s) 473, 533, 695, 823, 908, 913, 924, 992
Alw26I GTCTC 2 cut(s) 23, 205
AlwI GGATC 8 cut(s) 204, 217, 376, 547, 608, 624, 637, 1115
AlwNI CAGNNNCTG 1 cut(s) 878
Ama87I CYCGRG 3 cut(s) 459, 486, 767
Asp700I GAANNNNTTC 2 cut(s) 241, 285
AspLEI GCGC 2 cut(s) 91, 565
AspS9I GGNCC 1 cut(s) 159
AsuC2I CCSGG 3 cut(s) 168, 207, 1049
AsuHPI GGTGA 2 cut(s) 363, 1016
AsuNHI GCTAGC 1 cut(s) 772
AvaI CYCGRG 3 cut(s) 459, 486, 767
AvaII GGWCC 1 cut(s) 159
BamHI GGATCC 2 cut(s) 209, 629
BanI GGYRCC 2 cut(s) 88, 191
BarI GAAGNNNNNNTAC 2 cut(s) 1094, 1126
BbrPI CACGTG 1 cut(s) 442
BbsI GAAGAC 1 cut(s) 1109
BccI CCATC 6 cut(s) 46, 425, 536, 590, 925, 1070
BceAI ACGGC 2 cut(s) 21, 761
BciT130I CCWGG 1 cut(s) 234
BclI TGATCA 1 cut(s) 580
BcnI CCSGG 3 cut(s) 168, 207, 1049
BcoDI GTCTC 2 cut(s) 23, 205
BfaI CTAG 4 cut(s) 696, 773, 957, 980
BfmI CTRYAG 1 cut(s) 726
BfoI RGCGCY 1 cut(s) 92
BisI GCNGC 2 cut(s) 9, 132
BlpI GCTNAGC 1 cut(s) 909
BlsI GCNGC 2 cut(s) 10, 133
Bme1390I CCNGG 4 cut(s) 168, 207, 234, 1049
Bme18I GGWCC 1 cut(s) 159
BmeT110I CYCGRG 3 cut(s) 459, 486, 767
BmgBI CACGTC 1 cut(s) 335
BmgT120I GGNCC 1 cut(s) 159
BmiI GGNNCC 8 cut(s) 90, 193, 211, 221, 436, 631, 946, 1158
BmrFI CCNGG 4 cut(s) 168, 207, 234, 1049
BmsI GCATC 1 cut(s) 997
BmtI GCTAGC 1 cut(s) 776
BpiI GAAGAC 1 cut(s) 1109
BplI GAGNNNNNCTC 2 cut(s) 703, 735
Bpu10I CCTNAGC 1 cut(s) 294
Bpu1102I GCTNAGC 1 cut(s) 909
BpuEI CTTGAG 2 cut(s) 946, 1101
BpuMI CCSGG 3 cut(s) 168, 207, 1049
BsaAI YACGTR 1 cut(s) 442
BsaBI GATNNNNATC 1 cut(s) 551
BsaHI GRCGYC 1 cut(s) 89
BsaI GGTCTC 1 cut(s) 205
BsaJI CCNNGG 5 cut(s) 195, 458, 485, 556, 777
Bsc4I CCNNNNNNNGG 3 cut(s) 365, 1054, 1130
Bse1I ACTGG 1 cut(s) 1124
Bse3DI GCAATG 1 cut(s) 633
Bse8I GATNNNNATC 1 cut(s) 551
BseBI CCWGG 1 cut(s) 234
BseDI CCNNGG 5 cut(s) 195, 458, 485, 556, 777
BseGI GGATG 1 cut(s) 936
BseJI GATNNNNATC 1 cut(s) 551
BseLI CCNNNNNNNGG 3 cut(s) 365, 1054, 1130
BseMI GCAATG 1 cut(s) 633
BseNI ACTGG 1 cut(s) 1124
BsgI GTGCAG 1 cut(s) 124
Bsh1236I CGCG 3 cut(s) 100, 131, 1063
BshNI GGYRCC 2 cut(s) 88, 191
BsiHKCI CYCGRG 3 cut(s) 459, 486, 767
BsiSI CCGG 4 cut(s) 168, 207, 722, 1049
BslI CCNNNNNNNGG 3 cut(s) 365, 1054, 1130
BsmAI GTCTC 2 cut(s) 23, 205
BsmI GAATGC 1 cut(s) 526
Bso31I GGTCTC 1 cut(s) 205
BsoBI CYCGRG 3 cut(s) 459, 486, 767
Bsp143I GATC 9 cut(s) 64, 209, 368, 552, 580, 600, 629, 730, 1120
Bsp1720I GCTNAGC 1 cut(s) 909
Bsp19I CCATGG 1 cut(s) 195
BspACI CCGC 7 cut(s) 8, 100, 131, 171, 213, 1063, 1168
BspFNI CGCG 3 cut(s) 100, 131, 1063
BspLI GGNNCC 8 cut(s) 90, 193, 211, 221, 436, 631, 946, 1158
BspOI GCTAGC 1 cut(s) 776
BspPI GGATC 8 cut(s) 204, 217, 376, 547, 608, 624, 637, 1115
BspQI GCTCTTC 1 cut(s) 914
BspT107I GGYRCC 2 cut(s) 88, 191
BspTNI GGTCTC 1 cut(s) 205
BsrDI GCAATG 1 cut(s) 633
BsrI ACTGG 1 cut(s) 1124
BssECI CCNNGG 5 cut(s) 195, 458, 485, 556, 777
BssMI GATC 9 cut(s) 64, 209, 368, 552, 580, 600, 629, 730, 1120
BssNI GRCGYC 1 cut(s) 89
BssT1I CCWWGG 1 cut(s) 195
Bst2UI CCWGG 1 cut(s) 234
Bst4CI ACNGT 3 cut(s) 611, 644, 1035
Bst6I CTCTTC 1 cut(s) 914
BstACI GRCGYC 1 cut(s) 89
BstBAI YACGTR 1 cut(s) 442
BstC8I GCNNGC 4 cut(s) 774, 788, 825, 990
BstDEI CTNAG 2 cut(s) 294, 909
BstDSI CCRYGG 3 cut(s) 195, 556, 777
BstEII GGTNACC 1 cut(s) 569
BstENI CCTNNNNNAGG 1 cut(s) 363
BstF5I GGATG 1 cut(s) 936
BstFNI CGCG 3 cut(s) 100, 131, 1063
BstH2I RGCGCY 1 cut(s) 92
BstHHI GCGC 2 cut(s) 91, 565
BstKTI GATC 9 cut(s) 67, 212, 371, 555, 583, 603, 632, 733, 1123
BstMAI GTCTC 2 cut(s) 23, 205
BstMBI GATC 9 cut(s) 64, 209, 368, 552, 580, 600, 629, 730, 1120
BstMWI GCNNNNNNNGC 8 cut(s) 97, 137, 290, 344, 470, 521, 530, 692
BstNI CCWGG 1 cut(s) 234
BstNSI RCATGY 3 cut(s) 230, 329, 790
BstPI GGTNACC 1 cut(s) 569
BstSCI CCNGG 4 cut(s) 166, 205, 232, 1047
BstSFI CTRYAG 1 cut(s) 726
BstUI CGCG 3 cut(s) 100, 131, 1063
BstV2I GAAGAC 1 cut(s) 1109
BstX2I RGATCY 4 cut(s) 209, 552, 629, 1120
BstYI RGATCY 4 cut(s) 209, 552, 629, 1120
BtgI CCRYGG 3 cut(s) 195, 556, 777
BtrI CACGTC 1 cut(s) 335
BtsCI GGATG 1 cut(s) 936
BtsI GCAGTG 1 cut(s) 354
BtsIMutI CAGTG 1 cut(s) 354
Cac8I GCNNGC 4 cut(s) 774, 788, 825, 990
CaiI CAGNNNCTG 1 cut(s) 878
CfoI GCGC 2 cut(s) 91, 565
Cfr13I GGNCC 1 cut(s) 159
CseI GACGC 2 cut(s) 106, 749
Csp6I GTAC 3 cut(s) 122, 448, 612
CviAII CATG 7 cut(s) 196, 227, 264, 326, 344, 566, 787
CviQI GTAC 3 cut(s) 122, 448, 612
DdeI CTNAG 2 cut(s) 294, 909
DinI GGCGCC 1 cut(s) 90
DpnI GATC 9 cut(s) 66, 211, 370, 554, 582, 602, 631, 732, 1122
DpnII GATC 9 cut(s) 64, 209, 368, 552, 580, 600, 629, 730, 1120
Eam1104I CTCTTC 1 cut(s) 914
EarI CTCTTC 1 cut(s) 914
Eco130I CCWWGG 1 cut(s) 195
Eco31I GGTCTC 1 cut(s) 205
Eco47I GGWCC 1 cut(s) 159
Eco72I CACGTG 1 cut(s) 442
Eco88I CYCGRG 3 cut(s) 459, 486, 767
Eco91I GGTNACC 1 cut(s) 569
EcoNI CCTNNNNNAGG 1 cut(s) 363
EcoO65I GGTNACC 1 cut(s) 569
EcoRII CCWGG 1 cut(s) 232
EcoT14I CCWWGG 1 cut(s) 195
EgeI GGCGCC 1 cut(s) 90
EheI GGCGCC 1 cut(s) 90
ErhI CCWWGG 1 cut(s) 195
FaeI CATG 7 cut(s) 199, 230, 267, 329, 347, 569, 790
FatI CATG 7 cut(s) 195, 226, 263, 325, 343, 565, 786
FauNDI CATATG 1 cut(s) 1024
FbaI TGATCA 1 cut(s) 580
Fnu4HI GCNGC 2 cut(s) 9, 132
FokI GGATG 1 cut(s) 943
Fsp4HI GCNGC 2 cut(s) 9, 132
FspBI CTAG 4 cut(s) 696, 773, 957, 980
GlaI GCGC 2 cut(s) 90, 564
GluI GCNGC 2 cut(s) 9, 132
HaeII RGCGCY 1 cut(s) 92
HapII CCGG 4 cut(s) 168, 207, 722, 1049
HgaI GACGC 2 cut(s) 106, 749
HhaI GCGC 2 cut(s) 91, 565
Hin1I GRCGYC 1 cut(s) 89
Hin1II CATG 7 cut(s) 199, 230, 267, 329, 347, 569, 790
Hin6I GCGC 2 cut(s) 89, 563
HinP1I GCGC 2 cut(s) 89, 563
HincII GTYRAC 1 cut(s) 384
HindII GTYRAC 1 cut(s) 384
HindIII AAGCTT 1 cut(s) 471
HinfI GANTC 8 cut(s) 31, 60, 237, 526, 651, 749, 875, 966
HpaII CCGG 4 cut(s) 168, 207, 722, 1049
HphI GGTGA 2 cut(s) 363, 1016
Hpy166II GTNNAC 2 cut(s) 289, 384
Hpy188I TCNGA 7 cut(s) 187, 247, 403, 478, 754, 1101, 1175
Hpy188III TCNNGA 4 cut(s) 655, 879, 1069, 1118
Hpy8I GTNNAC 2 cut(s) 289, 384
HpyAV CCTTC 4 cut(s) 182, 665, 842, 876
HpyCH4III ACNGT 3 cut(s) 611, 644, 1035
HpyCH4IV ACGT 4 cut(s) 334, 441, 837, 1106
HpyCH4V TGCA 4 cut(s) 105, 347, 638, 988
HpyF10VI GCNNNNNNNGC 8 cut(s) 97, 137, 290, 344, 470, 521, 530, 692
HpyF3I CTNAG 2 cut(s) 294, 909
HpySE526I ACGT 4 cut(s) 334, 441, 837, 1106
Hsp92I GRCGYC 1 cut(s) 89
Hsp92II CATG 7 cut(s) 199, 230, 267, 329, 347, 569, 790
HspAI GCGC 2 cut(s) 89, 563
KasI GGCGCC 1 cut(s) 88
Ksp22I TGATCA 1 cut(s) 580
Kzo9I GATC 9 cut(s) 64, 209, 368, 552, 580, 600, 629, 730, 1120
LguI GCTCTTC 1 cut(s) 914
LmnI GCTCC 2 cut(s) 692, 1162
LweI GCATC 1 cut(s) 997
MaeI CTAG 4 cut(s) 696, 773, 957, 980
MaeII ACGT 4 cut(s) 334, 441, 837, 1106
MaeIII GTNAC 3 cut(s) 569, 798, 838
MalI GATC 9 cut(s) 66, 211, 370, 554, 582, 602, 631, 732, 1122
MboI GATC 9 cut(s) 64, 209, 368, 552, 580, 600, 629, 730, 1120
MboII GAAGA 5 cut(s) 33, 69, 914, 931, 1114
MflI RGATCY 4 cut(s) 209, 552, 629, 1120
MluCI AATT 1 cut(s) 317
Mly113I GGCGCC 1 cut(s) 89
MlyI GAGTC 2 cut(s) 25, 884
MmeI TCCRAC 1 cut(s) 310
MroXI GAANNNNTTC 2 cut(s) 241, 285
MseI TTAA 1 cut(s) 810
MspI CCGG 4 cut(s) 168, 207, 722, 1049
MspR9I CCNGG 4 cut(s) 168, 207, 234, 1049
Mva1269I GAATGC 1 cut(s) 526
MvaI CCWGG 1 cut(s) 234
MvnI CGCG 3 cut(s) 100, 131, 1063
MwoI GCNNNNNNNGC 8 cut(s) 97, 137, 290, 344, 470, 521, 530, 692
NarI GGCGCC 1 cut(s) 89
NciI CCSGG 3 cut(s) 168, 207, 1049
NcoI CCATGG 1 cut(s) 195
NdeI CATATG 1 cut(s) 1024
NdeII GATC 9 cut(s) 64, 209, 368, 552, 580, 600, 629, 730, 1120
NheI GCTAGC 1 cut(s) 772
NlaIII CATG 7 cut(s) 199, 230, 267, 329, 347, 569, 790
NlaIV GGNNCC 8 cut(s) 90, 193, 211, 221, 436, 631, 946, 1158
NspI RCATGY 3 cut(s) 230, 329, 790
PaeI GCATGC 1 cut(s) 790
PciI ACATGT 1 cut(s) 226
PciSI GCTCTTC 1 cut(s) 914
PcsI WCGNNNNNNNCGW 1 cut(s) 774
PctI GAATGC 1 cut(s) 526
PdmI GAANNNNTTC 2 cut(s) 241, 285
PfeI GAWTC 6 cut(s) 60, 237, 526, 651, 749, 966
PflMI CCANNNNNTGG 1 cut(s) 1130
PfoI TCCNGGA 1 cut(s) 205
PkrI GCNGC 2 cut(s) 10, 133
PleI GAGTC 2 cut(s) 25, 883
PluTI GGCGCC 1 cut(s) 92
PmaCI CACGTG 1 cut(s) 442
PmlI CACGTG 1 cut(s) 442
PpsI GAGTC 2 cut(s) 25, 883
Ppu21I YACGTR 1 cut(s) 442
PscI ACATGT 1 cut(s) 226
PsiI TTATAA 1 cut(s) 939
Psp6I CCWGG 1 cut(s) 232
PspCI CACGTG 1 cut(s) 442
PspEI GGTNACC 1 cut(s) 569
PspGI CCWGG 1 cut(s) 232
PspN4I GGNNCC 8 cut(s) 90, 193, 211, 221, 436, 631, 946, 1158
PspPI GGNCC 1 cut(s) 159
PstNI CAGNNNCTG 1 cut(s) 878
PsuI RGATCY 4 cut(s) 209, 552, 629, 1120
RsaI GTAC 3 cut(s) 123, 449, 613
RsaNI GTAC 3 cut(s) 122, 448, 612
SapI GCTCTTC 1 cut(s) 914
SaqAI TTAA 1 cut(s) 810
SatI GCNGC 2 cut(s) 9, 132
Sau3AI GATC 9 cut(s) 64, 209, 368, 552, 580, 600, 629, 730, 1120
Sau96I GGNCC 1 cut(s) 159
SchI GAGTC 2 cut(s) 25, 884
ScrFI CCNGG 4 cut(s) 168, 207, 234, 1049
SfaNI GCATC 1 cut(s) 997
SfcI CTRYAG 1 cut(s) 726
SfoI GGCGCC 1 cut(s) 90
SinI GGWCC 1 cut(s) 159
SmlI CTYRAG 2 cut(s) 925, 1116
SmoI CTYRAG 2 cut(s) 925, 1116
SphI GCATGC 1 cut(s) 790
Sse9I AATT 1 cut(s) 317
SsiI CCGC 7 cut(s) 8, 100, 131, 171, 213, 1063, 1168
SspDI GGCGCC 1 cut(s) 88
SspMI CTAG 4 cut(s) 696, 773, 957, 980
StyD4I CCNGG 4 cut(s) 166, 205, 232, 1047
StyI CCWWGG 1 cut(s) 195
TaaI ACNGT 3 cut(s) 611, 644, 1035
TaiI ACGT 4 cut(s) 337, 444, 840, 1109
TaqI TCGA 4 cut(s) 63, 76, 529, 540
TasI AATT 1 cut(s) 317
TauI GCSGC 2 cut(s) 11, 134
TfiI GAWTC 6 cut(s) 60, 237, 526, 651, 749, 966
Tru1I TTAA 1 cut(s) 810
Tru9I TTAA 1 cut(s) 810
TscAI CASTG 1 cut(s) 354
TspDTI ATGAA 4 cut(s) 264, 295, 932, 1011
TspGWI ACGGA 4 cut(s) 132, 172, 639, 1154
TspRI CASTG 1 cut(s) 354
Van91I CCANNNNNTGG 1 cut(s) 1130
VpaK11BI GGWCC 1 cut(s) 159
XagI CCTNNNNNAGG 1 cut(s) 363
XceI RCATGY 3 cut(s) 230, 329, 790
XcmI CCANNNNNNNNNTGG 1 cut(s) 563
XmnI GAANNNNTTC 2 cut(s) 241, 285
XspI CTAG 4 cut(s) 696, 773, 957, 980
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.