Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_samantha

Chromosome

Unknown

Orthogroup ID

OG0000870

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG093400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGGCGATTCTTCATCAAAAGGACTCGCTCTGTTCTCTCCTTACAAGATGGGCAGTTGCAATCTCTCTCACAGAGATCAACCCCCGGTGGCCTTTCTTATCACCGAAGCCACTCCGCTCTCCGACACGAGTGTTGGGTATCCACGTGTTCCTGGGATTTATCGAGATGAACAGGTTGAGGAATGGAAGAAGGTGGTCGACACCGTTCACGCCAAAGGTGCCATTATTTTCTGTCAACTTTGGCATGTAGGTCGTGCTTCTCATCAAGTTTACCAACCTGGCGGGGGTTCGCCGATTTCTTCAACCAACAATCCCATTTCAAATAGATGGAAAGTTCCGATGCCAGATGGATCTCAAGAGACTTACCCACAGCCTCGACGCCTCGAAACCCACGAAATACATCAGATTGTTGAGCACTATCGCCGCGCTGCCTTAAATGCAGTTCGAGCAGGTTTTGATGGAATTGAGATTCATGCGGCACACGGCTACCTCATTGATCAATTCTTGAAAGATGGAATCAACGATCGAACTGATGAGTATGGTGGGTCGCTTGCAAACCGTTGCAAATTCTTGATTCAAATTGTTCAAGCAGTAGTTGAAGCAATTGGTGCTGACAGAGTTGCCGTCAGAATCTCACCAGCTATTGATTTTCATGATGCTACGGACTCCGACCCGATTGGACTAGGCCTTGCAGTGATTGGCAGGCTCAATGAGCTTCAATACAACGTAGGTTCAAAGCTCGCTTATCTCCATGTGACTCAGCCTCGTTTCGCTACTCAAATAAACTTAGGCTGGTCCGAGTTTGATAAAGACAGAGAAGCTCAATTCATGAGGACTTTGCGAGAAGCTTATCAAGGTACATTCATGGCAAGTGGAGGTTTTACTAGAGAGCTAGGAATGGAAGCTGTGGCTTCTGGTGATGCTGATTTAGTGTCGTACGGTCGCTATTTTATCTCAAACCCCGACTTGGTTTTGAGATTTAAGCTGAATGCTCCCTTGACCAAGTATGTCAGGAAGACTTTTTACACCCAAGACCCTGTTGTTGGGTACACAGATTACCCTTTTCTGAACAACACAAGTATTAAAGAGCAAGCAGTCTCCCGCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009605 GO:0009607 GO:0009620 GO:0009694 GO:0009695 GO:0009791 GO:0009908 GO:0009987 GO:0010035 GO:0010193 GO:0010817 GO:0016053 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0019752 GO:0022414 GO:0031407 GO:0031408 GO:0032501 GO:0032502 GO:0032787 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042579 GO:0042802 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046677 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0055114 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0090567 GO:0099402 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

369

Amino Acids

41.13

Weight (kDa)

6.42

Isoelectric Point (pI)

32.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_FMN	PF00724	23 - 331	5.5e-72	NADH:flavin oxidoreductase / NADH oxidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06050 AT2G06050 AT2G06050
fragaria_vesca	FvH4_1g08451 FvH4_1g08452 FvH4_1g08453 FvH4_1g08454 FvH4_1g08510 FvH4_1g08510 FvH4_1g08510 FvH4_1g08510
malus_domestica	MD00G1142600.v1.1 MD02G1089100.v1.1 MD12G1067300.v1.1 MD15G1216200.v1.1
prunus_persica	Prupe.7G200800_v2.0.a1
pyrus_communis	pycom02g07130 pycom15g19180
rosa_chinensis	RchiOBHm_Chr2g0094561 RchiOBHm_Chr2g0094611 RchiOBHm_Chr2g0094631 RchiOBHm_Chr2g0094641 RchiOBHm_Chr2g0150041 RchiOBHm_Chr7g0211621 RchiOBHm_Chr7g0230281
rosa_laevigata	RLG00000002990 RLG00000016504 RLG00000016506 RLG00000016507 RLG00000020462
rosa_multiflora	Rmu_co8133296.1_g000001 Rmu_co8390375.1_g000001 Rmu_sc0003760.1_g000017 Rmu_sc0004232.1_g000012 Rmu_sc0004359.1_g000033 Rmu_sc0004359.1_g000036 Rmu_sc0006422.1_g000001 Rmu_sc0009445.1_g000018 Rmu_sc0017068.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097490 Rroxscaffold_2G00147030 Rroxscaffold_2G00147040 Rroxscaffold_2G00147050 Rroxscaffold_3G00247670
rosa_rugosa	Rorug02G0045400 Rorug02G0045400 Rorug02G0045600 Rorug02G0045700 Rorug02G0418000 Rorug07G0126300
rosa_samantha	Rh2AG093100 Rh2BG093400 Rh2BG093700 Rh2BG489500 Rh2CG095800 Rh2CG096000 Rh2DG092200 Rh2DG092400 Rh7AG259000 Rh7BG253300 Rh7CG276100 Rh7DG266600
rosa_wichuraiana	Rw0G003550 Rw0G003560 Rw2G038940 Rw7G022140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	440
AccB1I	GGYRCC	1 cut(s)	218
AccBSI	CCGCTC	1 cut(s)	118
AccI	GTMKAC	1 cut(s)	198
AccII	CGCG	1 cut(s)	426
AciI	CCGC	5 cut(s)	116, 282, 424, 476, 1102
AclWI	GGATC	1 cut(s)	358
AcsI	RAATTY	1 cut(s)	566
AcvI	CACGTG	1 cut(s)	146
AcyI	GRCGYC	1 cut(s)	379
AfaI	GTAC	3 cut(s)	859, 938, 1049
AfiI	CCNNNNNNNGG	3 cut(s)	284, 967, 1043
AflIII	ACRYGT	1 cut(s)	145
AgsI	TTSAA	8 cut(s)	303, 321, 508, 578, 587, 599, 719, 735
AjnI	CCWGG	2 cut(s)	151, 277
AluBI	AGCT	8 cut(s)	641, 715, 739, 821, 848, 892, 905, 985
AluI	AGCT	8 cut(s)	641, 715, 739, 821, 848, 892, 905, 985
Alw21I	GWGCWC	1 cut(s)	417
Alw26I	GTCTC	2 cut(s)	353, 1102
AlwI	GGATC	1 cut(s)	358
AoxI	GGCC	2 cut(s)	90, 685
ApeKI	GCWGC	1 cut(s)	428
ApoI	RAATTY	1 cut(s)	566
AspLEI	GCGC	1 cut(s)	428
AspS9I	GGNCC	1 cut(s)	795
AsuC2I	CCSGG	1 cut(s)	86
AsuHPI	GGTGA	3 cut(s)	94, 627, 929
AvaII	GGWCC	1 cut(s)	795
BanI	GGYRCC	1 cut(s)	218
BarI	GAAGNNNNNNTAC	2 cut(s)	1007, 1039
BauI	CACGAG	1 cut(s)	127
BbrPI	CACGTG	1 cut(s)	146
BbsI	GAAGAC	1 cut(s)	1022
Bbv12I	GWGCWC	1 cut(s)	417
BbvI	GCAGC	1 cut(s)	415
BccI	CCATC	5 cut(s)	43, 321, 341, 452, 506
BceAI	ACGGC	2 cut(s)	499, 608
BcgI	CGANNNNNNTGC	2 cut(s)	233, 267
BciT130I	CCWGG	2 cut(s)	153, 279
BciVI	GTATCC	1 cut(s)	150
BclI	TGATCA	1 cut(s)	496
BcnI	CCSGG	1 cut(s)	86
BcoDI	GTCTC	2 cut(s)	353, 1102
BfaI	CTAG	3 cut(s)	683, 885, 893
BfuAI	ACCTGC	1 cut(s)	440
BfuI	GTATCC	1 cut(s)	150
BisI	GCNGC	3 cut(s)	424, 429, 477
BlsI	GCNGC	3 cut(s)	425, 430, 478
Bme1390I	CCNGG	3 cut(s)	86, 153, 279
Bme18I	GGWCC	1 cut(s)	795
BmgT120I	GGNCC	1 cut(s)	795
BmiI	GGNNCC	1 cut(s)	220
BmrFI	CCNGG	3 cut(s)	86, 153, 279
BmsI	GCATC	3 cut(s)	330, 646, 910
BpiI	GAAGAC	1 cut(s)	1022
BpuEI	CTTGAG	1 cut(s)	339
BpuMI	CCSGG	1 cut(s)	86
BsaAI	YACGTR	1 cut(s)	146
BsaHI	GRCGYC	1 cut(s)	379
BsaJI	CCNNGG	2 cut(s)	84, 152
Bsc4I	CCNNNNNNNGG	3 cut(s)	284, 967, 1043
BseBI	CCWGG	2 cut(s)	153, 279
BseDI	CCNNGG	2 cut(s)	84, 152
BseLI	CCNNNNNNNGG	3 cut(s)	284, 967, 1043
BseMII	CTCAG	1 cut(s)	773
BseXI	GCAGC	1 cut(s)	415
Bsh1236I	CGCG	1 cut(s)	426
Bsh1285I	CGRYCG	2 cut(s)	526, 943
BshFI	GGCC	2 cut(s)	92, 687
BshNI	GGYRCC	1 cut(s)	218
BsiEI	CGRYCG	2 cut(s)	526, 943
BsiHKAI	GWGCWC	1 cut(s)	417
BsiSI	CCGG	1 cut(s)	86
BsiWI	CGTACG	1 cut(s)	936
BslI	CCNNNNNNNGG	3 cut(s)	284, 967, 1043
BsmAI	GTCTC	2 cut(s)	353, 1102
BsmI	GAATGC	1 cut(s)	994
BsnI	GGCC	2 cut(s)	92, 687
Bsp1286I	GDGCHC	1 cut(s)	417
Bsp143I	GATC	4 cut(s)	76, 350, 496, 523
BspACI	CCGC	5 cut(s)	116, 282, 424, 476, 1102
BspANI	GGCC	2 cut(s)	92, 687
BspCNI	CTCAG	1 cut(s)	772
BspFNI	CGCG	1 cut(s)	426
BspHI	TCATGA	2 cut(s)	652, 828
BspLI	GGNNCC	1 cut(s)	220
BspMI	ACCTGC	1 cut(s)	440
BspPI	GGATC	1 cut(s)	358
BspT107I	GGYRCC	1 cut(s)	218
BsrBI	CCGCTC	1 cut(s)	118
BssECI	CCNNGG	2 cut(s)	84, 152
BssMI	GATC	4 cut(s)	76, 350, 496, 523
BssNI	GRCGYC	1 cut(s)	379
BssSI	CACGAG	1 cut(s)	127
Bst2BI	CACGAG	1 cut(s)	127
Bst2UI	CCWGG	2 cut(s)	153, 279
Bst4CI	ACNGT	3 cut(s)	205, 560, 941
BstACI	GRCGYC	1 cut(s)	379
BstAPI	GCANNNNNTGC	1 cut(s)	608
BstBAI	YACGTR	1 cut(s)	146
BstC8I	GCNNGC	4 cut(s)	552, 704, 741, 1092
BstDEI	CTNAG	2 cut(s)	759, 787
BstFNI	CGCG	1 cut(s)	426
BstHHI	GCGC	1 cut(s)	428
BstKTI	GATC	4 cut(s)	79, 353, 499, 526
BstMAI	GTCTC	2 cut(s)	353, 1102
BstMBI	GATC	4 cut(s)	76, 350, 496, 523
BstMCI	CGRYCG	2 cut(s)	526, 943
BstMWI	GCNNNNNNNGC	5 cut(s)	218, 437, 446, 608, 712
BstNI	CCWGG	2 cut(s)	153, 279
BstNSI	RCATGY	1 cut(s)	248
BstSCI	CCNGG	3 cut(s)	84, 151, 277
BstUI	CGCG	1 cut(s)	426
BstV1I	GCAGC	1 cut(s)	415
BstV2I	GAAGAC	1 cut(s)	1022
BstX2I	RGATCY	1 cut(s)	350
BstYI	RGATCY	1 cut(s)	350
BsuI	GTATCC	1 cut(s)	150
BsuRI	GGCC	2 cut(s)	92, 687
BtsI	GCAGTG	1 cut(s)	699
BtsIMutI	CAGTG	1 cut(s)	699
BveI	ACCTGC	1 cut(s)	440
Cac8I	GCNNGC	4 cut(s)	552, 704, 741, 1092
CciI	TCATGA	2 cut(s)	652, 828
CfoI	GCGC	1 cut(s)	428
Cfr13I	GGNCC	1 cut(s)	795
CseI	GACGC	1 cut(s)	387
Csp6I	GTAC	3 cut(s)	858, 937, 1048
CviAII	CATG	6 cut(s)	245, 473, 653, 752, 829, 865
CviQI	GTAC	3 cut(s)	858, 937, 1048
DdeI	CTNAG	2 cut(s)	759, 787
DpnI	GATC	4 cut(s)	78, 352, 498, 525
DpnII	GATC	4 cut(s)	76, 350, 496, 523
Eco147I	AGGCCT	1 cut(s)	687
Eco47I	GGWCC	1 cut(s)	795
Eco72I	CACGTG	1 cut(s)	146
EcoRII	CCWGG	2 cut(s)	151, 277
FaeI	CATG	6 cut(s)	248, 476, 656, 755, 832, 868
FaiI	YATR	8 cut(s)	246, 474, 540, 654, 753, 830, 866, 1008
FatI	CATG	6 cut(s)	244, 472, 652, 751, 828, 864
FauI	CCCGC	1 cut(s)	275
FbaI	TGATCA	1 cut(s)	496
FblI	GTMKAC	1 cut(s)	198
Fnu4HI	GCNGC	3 cut(s)	424, 429, 477
Fsp4HI	GCNGC	3 cut(s)	424, 429, 477
FspBI	CTAG	3 cut(s)	683, 885, 893
GlaI	GCGC	1 cut(s)	427
GluI	GCNGC	3 cut(s)	424, 429, 477
HaeIII	GGCC	2 cut(s)	92, 687
HapII	CCGG	1 cut(s)	86
HgaI	GACGC	1 cut(s)	387
HhaI	GCGC	1 cut(s)	428
Hin1I	GRCGYC	1 cut(s)	379
Hin1II	CATG	6 cut(s)	248, 476, 656, 755, 832, 868
Hin6I	GCGC	1 cut(s)	426
HinP1I	GCGC	1 cut(s)	426
HincII	GTYRAC	2 cut(s)	199, 236
HindII	GTYRAC	2 cut(s)	199, 236
HindIII	AAGCTT	1 cut(s)	846
HinfI	GANTC	8 cut(s)	8, 24, 469, 516, 574, 630, 665, 757
HpaII	CCGG	1 cut(s)	86
HphI	GGTGA	3 cut(s)	94, 627, 929
Hpy166II	GTNNAC	5 cut(s)	199, 208, 236, 271, 1050
Hpy188I	TCNGA	7 cut(s)	124, 339, 405, 629, 670, 799, 1068
Hpy188III	TCNNGA	7 cut(s)	164, 356, 505, 571, 653, 829, 1012
Hpy8I	GTNNAC	5 cut(s)	199, 208, 236, 271, 1050
Hpy99I	CGWCG	1 cut(s)	381
HpyAV	CCTTC	1 cut(s)	184
HpyCH4III	ACNGT	3 cut(s)	205, 560, 941
HpyCH4IV	ACGT	2 cut(s)	145, 726
HpyCH4V	TGCA	5 cut(s)	60, 440, 554, 564, 692
HpyF10VI	GCNNNNNNNGC	5 cut(s)	218, 437, 446, 608, 712
HpyF3I	CTNAG	2 cut(s)	759, 787
HpySE526I	ACGT	2 cut(s)	145, 726
Hsp92I	GRCGYC	1 cut(s)	379
Hsp92II	CATG	6 cut(s)	248, 476, 656, 755, 832, 868
HspAI	GCGC	1 cut(s)	426
Ksp22I	TGATCA	1 cut(s)	496
Kzo9I	GATC	4 cut(s)	76, 350, 496, 523
LmnI	GCTCC	1 cut(s)	997
Lsp1109I	GCAGC	1 cut(s)	415
LweI	GCATC	3 cut(s)	330, 646, 910
MaeI	CTAG	3 cut(s)	683, 885, 893
MaeII	ACGT	2 cut(s)	145, 726
MaeIII	GTNAC	1 cut(s)	754
MalI	GATC	4 cut(s)	78, 352, 498, 525
MbiI	CCGCTC	1 cut(s)	118
MboI	GATC	4 cut(s)	76, 350, 496, 523
MboII	GAAGA	4 cut(s)	3, 199, 291, 1027
MfeI	CAATTG	1 cut(s)	603
MflI	RGATCY	1 cut(s)	350
MhlI	GDGCHC	1 cut(s)	417
MluCI	AATT	6 cut(s)	462, 500, 566, 579, 603, 824
MlyI	GAGTC	3 cut(s)	18, 659, 751
MmeI	TCCRAC	2 cut(s)	147, 693
MnlI	CCTC	7 cut(s)	172, 384, 392, 500, 774, 825, 869
MseI	TTAA	3 cut(s)	434, 981, 1083
MspI	CCGG	1 cut(s)	86
MspR9I	CCNGG	3 cut(s)	86, 153, 279
MunI	CAATTG	1 cut(s)	603
Mva1269I	GAATGC	1 cut(s)	994
MvaI	CCWGG	2 cut(s)	153, 279
MvnI	CGCG	1 cut(s)	426
MwoI	GCNNNNNNNGC	5 cut(s)	218, 437, 446, 608, 712
NciI	CCSGG	1 cut(s)	86
NdeII	GATC	4 cut(s)	76, 350, 496, 523
NlaIII	CATG	6 cut(s)	248, 476, 656, 755, 832, 868
NlaIV	GGNNCC	1 cut(s)	220
NmuCI	GTSAC	1 cut(s)	754
NspI	RCATGY	1 cut(s)	248
PagI	TCATGA	2 cut(s)	652, 828
PceI	AGGCCT	1 cut(s)	687
PcsI	WCGNNNNNNNCGW	1 cut(s)	390
PctI	GAATGC	1 cut(s)	994
PfeI	GAWTC	5 cut(s)	8, 469, 516, 574, 630
Pfl23II	CGTACG	1 cut(s)	936
PkrI	GCNGC	3 cut(s)	425, 430, 478
Ple19I	CGATCG	1 cut(s)	526
PleI	GAGTC	3 cut(s)	18, 659, 751
PmaCI	CACGTG	1 cut(s)	146
PmlI	CACGTG	1 cut(s)	146
PpsI	GAGTC	3 cut(s)	18, 659, 751
Ppu21I	YACGTR	1 cut(s)	146
Psp6I	CCWGG	2 cut(s)	151, 277
PspCI	CACGTG	1 cut(s)	146
PspGI	CCWGG	2 cut(s)	151, 277
PspLI	CGTACG	1 cut(s)	936
PspN4I	GGNNCC	1 cut(s)	220
PspPI	GGNCC	1 cut(s)	795
PsuI	RGATCY	1 cut(s)	350
PvuI	CGATCG	1 cut(s)	526
RsaI	GTAC	3 cut(s)	859, 938, 1049
RsaNI	GTAC	3 cut(s)	858, 937, 1048
SalI	GTCGAC	1 cut(s)	197
SaqAI	TTAA	3 cut(s)	434, 981, 1083
SatI	GCNGC	3 cut(s)	424, 429, 477
Sau3AI	GATC	4 cut(s)	76, 350, 496, 523
Sau96I	GGNCC	1 cut(s)	795
SchI	GAGTC	3 cut(s)	18, 659, 751
ScrFI	CCNGG	3 cut(s)	86, 153, 279
SduI	GDGCHC	1 cut(s)	417
SfaNI	GCATC	3 cut(s)	330, 646, 910
SinI	GGWCC	1 cut(s)	795
SmlI	CTYRAG	1 cut(s)	354
SmoI	CTYRAG	1 cut(s)	354
Sse9I	AATT	6 cut(s)	462, 500, 566, 579, 603, 824
SseBI	AGGCCT	1 cut(s)	687
SsiI	CCGC	5 cut(s)	116, 282, 424, 476, 1102
SspMI	CTAG	3 cut(s)	683, 885, 893
StuI	AGGCCT	1 cut(s)	687
StyD4I	CCNGG	3 cut(s)	84, 151, 277
TaaI	ACNGT	3 cut(s)	205, 560, 941
TaiI	ACGT	2 cut(s)	148, 729
TaqI	TCGA	6 cut(s)	163, 198, 376, 384, 445, 526
TasI	AATT	6 cut(s)	462, 500, 566, 579, 603, 824
TauI	GCSGC	2 cut(s)	426, 479
TfiI	GAWTC	5 cut(s)	8, 469, 516, 574, 630
Tru1I	TTAA	3 cut(s)	434, 981, 1083
Tru9I	TTAA	3 cut(s)	434, 981, 1083
TscAI	CASTG	1 cut(s)	699
TseFI	GTSAC	1 cut(s)	754
TseI	GCWGC	1 cut(s)	428
Tsp45I	GTSAC	1 cut(s)	754
TspDTI	ATGAA	5 cut(s)	183, 461, 641, 817, 853
TspGWI	ACGGA	1 cut(s)	677
TspRI	CASTG	1 cut(s)	699
VpaK11BI	GGWCC	1 cut(s)	795
XapI	RAATTY	1 cut(s)	566
XceI	RCATGY	1 cut(s)	248
XmiI	GTMKAC	1 cut(s)	198
XspI	CTAG	3 cut(s)	683, 885, 893

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.