Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0000870

Physical Location & Seq

Genomic Coordinates Forward (+)

7056341 .. 7057148

Gene Structure 808 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1089100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGCCATTCGTGCAGGTCTGTTTTGATGGAATTGAGATTCATGGGGCACATGGCTATCTCATTGACCAATTCTTGAAAGACGGGATCAATGATCGAACAGATGAGTATGGTGGATCGCTTGAAAACCGGTGCAAATTCTTGATTCAGATTGTTCAAGCAGTGGTTGGAGCAATAGGTGCTGATAGAGTTGGGGTCAGAATGTCACCAGCTATTGATCACATGGATGCTGTTGACTCTAATCCACTTATTCTAGGTCTGGCAGTGACCGAAAGGCTCGATAAGCTCCAACAAAACTGGGGCACAAAACTGACCTATCTTCATGTGACTCAGCCTCGCTACGCAGCCTATGGTCAAGCGGAAGCTGGAAAACCTGGTAGCGATGAAGAGGAAGCTGTGTTTATGAGGACTTTGAGGAAAACTTATCACGGTACATTTCTTGCTAGCGGAGGGTTCACTAGAGAGCTTGGAATGCAAGCTGTGGCTTCTGGGGATGCTGATTTGGTGTCCTACGGTCGCCTTTTTATTTCAAACCCTGATTTGGTTATGAGATTTAAGCTTAATGCACCCTTGACCAAGTATAACAGGAAGACTTTCTACACACAAGATCCTGTTGTTGGGTACACTGACTACCCTTTCCTGAACAAATCAAACGGGAAAGAGGAACCGCTCTCCCGCGTCTTTGATTTTAATGTTTTGGAAGTTTTACTTGTACCATTTGGATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009605 GO:0009607 GO:0009620 GO:0009694 GO:0009695 GO:0009791 GO:0009908 GO:0009987 GO:0010035 GO:0010193 GO:0010817 GO:0016053 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0019752 GO:0022414 GO:0031407 GO:0031408 GO:0032501 GO:0032502 GO:0032787 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042579 GO:0042802 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046677 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0055114 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0090567 GO:0099402 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

242

Amino Acids

26.87

Weight (kDa)

5.55

Isoelectric Point (pI)

24.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_FMN	PF00724	7 - 188	1.6e-41	NADH:flavin oxidoreductase / NADH oxidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06050 AT2G06050 AT2G06050
fragaria_vesca	FvH4_1g08451 FvH4_1g08452 FvH4_1g08453 FvH4_1g08454 FvH4_1g08510 FvH4_1g08510 FvH4_1g08510 FvH4_1g08510
malus_domestica	MD00G1142600.v1.1 MD02G1089100.v1.1 MD12G1067300.v1.1 MD15G1216200.v1.1
prunus_persica	Prupe.7G200800_v2.0.a1
pyrus_communis	pycom02g07130 pycom15g19180
rosa_chinensis	RchiOBHm_Chr2g0094561 RchiOBHm_Chr2g0094611 RchiOBHm_Chr2g0094631 RchiOBHm_Chr2g0094641 RchiOBHm_Chr2g0150041 RchiOBHm_Chr7g0211621 RchiOBHm_Chr7g0230281
rosa_laevigata	RLG00000002990 RLG00000016504 RLG00000016506 RLG00000016507 RLG00000020462
rosa_multiflora	Rmu_co8133296.1_g000001 Rmu_co8390375.1_g000001 Rmu_sc0003760.1_g000017 Rmu_sc0004232.1_g000012 Rmu_sc0004359.1_g000033 Rmu_sc0004359.1_g000036 Rmu_sc0006422.1_g000001 Rmu_sc0009445.1_g000018 Rmu_sc0017068.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097490 Rroxscaffold_2G00147030 Rroxscaffold_2G00147040 Rroxscaffold_2G00147050 Rroxscaffold_3G00247670
rosa_rugosa	Rorug02G0045400 Rorug02G0045400 Rorug02G0045600 Rorug02G0045700 Rorug02G0418000 Rorug07G0126300
rosa_samantha	Rh2AG093100 Rh2BG093400 Rh2BG093700 Rh2BG489500 Rh2CG095800 Rh2CG096000 Rh2DG092200 Rh2DG092400 Rh7AG259000 Rh7BG253300 Rh7CG276100 Rh7DG266600
rosa_wichuraiana	Rw0G003550 Rw0G003560 Rw2G038940 Rw7G022140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	4
AccBSI	CCGCTC	1 cut(s)	667
AccII	CGCG	1 cut(s)	675
AciI	CCGC	4 cut(s)	356, 444, 665, 673
AclWI	GGATC	3 cut(s)	92, 121, 599
AcsI	RAATTY	1 cut(s)	134
AfaI	GTAC	3 cut(s)	430, 620, 711
AfiI	CCNNNNNNNGG	2 cut(s)	538, 614
AgeI	ACCGGT	1 cut(s)	126
AgsI	TTSAA	4 cut(s)	76, 122, 155, 528
AjnI	CCWGG	1 cut(s)	370
AluBI	AGCT	7 cut(s)	209, 283, 362, 392, 463, 476, 556
AluI	AGCT	7 cut(s)	209, 283, 362, 392, 463, 476, 556
AlwI	GGATC	3 cut(s)	92, 121, 599
ApeKI	GCWGC	1 cut(s)	341
ApoI	RAATTY	1 cut(s)	134
AsiGI	ACCGGT	1 cut(s)	126
Asp700I	GAANNNNTTC	1 cut(s)	590
AsuHPI	GGTGA	1 cut(s)	195
AsuNHI	GCTAGC	1 cut(s)	440
BaeGI	GKGCMC	2 cut(s)	49, 302
BarI	GAAGNNNNNNTAC	2 cut(s)	578, 610
BbsI	GAAGAC	1 cut(s)	593
BbvI	GCAGC	1 cut(s)	353
BccI	CCATC	1 cut(s)	20
BciT130I	CCWGG	1 cut(s)	372
BclI	TGATCA	1 cut(s)	214
BfaI	CTAG	3 cut(s)	251, 441, 456
BfuAI	ACCTGC	1 cut(s)	4
BisI	GCNGC	1 cut(s)	342
BlsI	GCNGC	1 cut(s)	343
Bme1390I	CCNGG	1 cut(s)	372
BmiI	GGNNCC	1 cut(s)	663
BmrFI	CCNGG	1 cut(s)	372
BmrI	ACTGGG	1 cut(s)	304
BmsI	GCATC	2 cut(s)	214, 481
BmtI	GCTAGC	1 cut(s)	444
BmuI	ACTGGG	1 cut(s)	304
BpiI	GAAGAC	1 cut(s)	593
BsaWI	WCCGGW	1 cut(s)	126
Bsc4I	CCNNNNNNNGG	2 cut(s)	538, 614
Bse118I	RCCGGY	1 cut(s)	126
Bse1I	ACTGG	1 cut(s)	299
BseBI	CCWGG	1 cut(s)	372
BseGI	GGATG	2 cut(s)	229, 496
BseLI	CCNNNNNNNGG	2 cut(s)	538, 614
BseMII	CTCAG	1 cut(s)	341
BseNI	ACTGG	1 cut(s)	299
BseSI	GKGCMC	2 cut(s)	49, 302
BseXI	GCAGC	1 cut(s)	353
BsgI	GTGCAG	1 cut(s)	32
Bsh1236I	CGCG	1 cut(s)	675
Bsh1285I	CGRYCG	1 cut(s)	514
BshTI	ACCGGT	1 cut(s)	126
BsiEI	CGRYCG	1 cut(s)	514
BsiSI	CCGG	1 cut(s)	127
BslI	CCNNNNNNNGG	2 cut(s)	538, 614
BsmI	GAATGC	1 cut(s)	474
Bsp1286I	GDGCHC	2 cut(s)	49, 302
Bsp143I	GATC	5 cut(s)	84, 91, 113, 214, 604
BspACI	CCGC	4 cut(s)	356, 444, 665, 673
BspCNI	CTCAG	1 cut(s)	340
BspFNI	CGCG	1 cut(s)	675
BspLI	GGNNCC	1 cut(s)	663
BspMI	ACCTGC	1 cut(s)	4
BspOI	GCTAGC	1 cut(s)	444
BspPI	GGATC	3 cut(s)	92, 121, 599
BsrBI	CCGCTC	1 cut(s)	667
BsrFI	RCCGGY	1 cut(s)	126
BsrI	ACTGG	1 cut(s)	299
BssAI	RCCGGY	1 cut(s)	126
BssMI	GATC	5 cut(s)	84, 91, 113, 214, 604
Bst2UI	CCWGG	1 cut(s)	372
Bst4CI	ACNGT	2 cut(s)	428, 512
Bst6I	CTCTTC	1 cut(s)	378
BstAPI	GCANNNNNTGC	1 cut(s)	176
BstC8I	GCNNGC	2 cut(s)	442, 474
BstDEI	CTNAG	1 cut(s)	327
BstF5I	GGATG	2 cut(s)	229, 496
BstFNI	CGCG	1 cut(s)	675
BstKTI	GATC	5 cut(s)	87, 94, 116, 217, 607
BstMBI	GATC	5 cut(s)	84, 91, 113, 214, 604
BstMCI	CGRYCG	1 cut(s)	514
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 176, 280, 469
BstNI	CCWGG	1 cut(s)	372
BstSCI	CCNGG	1 cut(s)	370
BstSLI	GKGCMC	2 cut(s)	49, 302
BstUI	CGCG	1 cut(s)	675
BstV1I	GCAGC	1 cut(s)	353
BstV2I	GAAGAC	1 cut(s)	593
BstX2I	RGATCY	1 cut(s)	604
BstYI	RGATCY	1 cut(s)	604
BtgZI	GCGATG	1 cut(s)	393
BtsCI	GGATG	2 cut(s)	229, 496
BtsI	GCAGTG	2 cut(s)	165, 267
BtsIMutI	CAGTG	3 cut(s)	165, 267, 621
BveI	ACCTGC	1 cut(s)	4
Cac8I	GCNNGC	2 cut(s)	442, 474
Cfr10I	RCCGGY	1 cut(s)	126
CseI	GACGC	1 cut(s)	664
CsiI	ACCWGGT	1 cut(s)	370
Csp6I	GTAC	3 cut(s)	429, 619, 710
CspAI	ACCGGT	1 cut(s)	126
CviAII	CATG	4 cut(s)	41, 50, 220, 320
CviQI	GTAC	3 cut(s)	429, 619, 710
DdeI	CTNAG	1 cut(s)	327
DpnI	GATC	5 cut(s)	86, 93, 115, 216, 606
DpnII	GATC	5 cut(s)	84, 91, 113, 214, 604
Eam1104I	CTCTTC	1 cut(s)	378
EarI	CTCTTC	1 cut(s)	378
EcoRII	CCWGG	1 cut(s)	370
FaeI	CATG	4 cut(s)	44, 53, 223, 323
FaiI	YATR	9 cut(s)	42, 51, 108, 221, 321, 348, 401, 545, 579
FalI	AAGNNNNNCTT	2 cut(s)	690, 722
FatI	CATG	4 cut(s)	40, 49, 219, 319
FauI	CCCGC	1 cut(s)	680
FbaI	TGATCA	1 cut(s)	214
Fnu4HI	GCNGC	1 cut(s)	342
FokI	GGATG	2 cut(s)	236, 503
Fsp4HI	GCNGC	1 cut(s)	342
FspBI	CTAG	3 cut(s)	251, 441, 456
GluI	GCNGC	1 cut(s)	342
HapII	CCGG	1 cut(s)	127
HgaI	GACGC	1 cut(s)	664
Hin1II	CATG	4 cut(s)	44, 53, 223, 323
HincII	GTYRAC	1 cut(s)	232
HindII	GTYRAC	1 cut(s)	232
HindIII	AAGCTT	1 cut(s)	554
HinfI	GANTC	4 cut(s)	37, 142, 233, 325
HpaII	CCGG	1 cut(s)	127
HphI	GGTGA	1 cut(s)	195
Hpy166II	GTNNAC	3 cut(s)	232, 453, 621
Hpy188I	TCNGA	2 cut(s)	147, 197
Hpy188III	TCNNGA	3 cut(s)	73, 139, 637
Hpy8I	GTNNAC	3 cut(s)	232, 453, 621
HpyCH4III	ACNGT	2 cut(s)	428, 512
HpyCH4V	TGCA	4 cut(s)	13, 132, 472, 563
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 176, 280, 469
HpyF3I	CTNAG	1 cut(s)	327
Hsp92II	CATG	4 cut(s)	44, 53, 223, 323
Ksp22I	TGATCA	1 cut(s)	214
Kzo9I	GATC	5 cut(s)	84, 91, 113, 214, 604
LmnI	GCTCC	2 cut(s)	167, 288
Lsp1109I	GCAGC	1 cut(s)	353
LweI	GCATC	2 cut(s)	214, 481
MabI	ACCWGGT	1 cut(s)	370
MaeI	CTAG	3 cut(s)	251, 441, 456
MaeIII	GTNAC	3 cut(s)	201, 262, 322
MalI	GATC	5 cut(s)	86, 93, 115, 216, 606
MbiI	CCGCTC	1 cut(s)	667
MboI	GATC	5 cut(s)	84, 91, 113, 214, 604
MboII	GAAGA	3 cut(s)	308, 395, 598
MflI	RGATCY	1 cut(s)	604
MhlI	GDGCHC	2 cut(s)	49, 302
MluCI	AATT	3 cut(s)	30, 68, 134
MlyI	GAGTC	2 cut(s)	227, 319
MmeI	TCCRAC	2 cut(s)	145, 310
MnlI	CCTC	6 cut(s)	342, 379, 396, 405, 440, 652
MroXI	GAANNNNTTC	1 cut(s)	590
MseI	TTAA	3 cut(s)	552, 558, 687
MslI	CAYNNNNRTG	1 cut(s)	222
MspI	CCGG	1 cut(s)	127
MspR9I	CCNGG	1 cut(s)	372
Mva1269I	GAATGC	1 cut(s)	474
MvaI	CCWGG	1 cut(s)	372
MvnI	CGCG	1 cut(s)	675
MwoI	GCNNNNNNNGC	4 cut(s)	10, 176, 280, 469
NdeII	GATC	5 cut(s)	84, 91, 113, 214, 604
NheI	GCTAGC	1 cut(s)	440
NlaIII	CATG	4 cut(s)	44, 53, 223, 323
NlaIV	GGNNCC	1 cut(s)	663
NmuCI	GTSAC	3 cut(s)	201, 262, 322
PctI	GAATGC	1 cut(s)	474
PdmI	GAANNNNTTC	1 cut(s)	590
PfeI	GAWTC	2 cut(s)	37, 142
PinAI	ACCGGT	1 cut(s)	126
PkrI	GCNGC	1 cut(s)	343
PleI	GAGTC	2 cut(s)	227, 319
PpsI	GAGTC	2 cut(s)	227, 319
Psp6I	CCWGG	1 cut(s)	370
PspGI	CCWGG	1 cut(s)	370
PspN4I	GGNNCC	1 cut(s)	663
PsuI	RGATCY	1 cut(s)	604
RsaI	GTAC	3 cut(s)	430, 620, 711
RsaNI	GTAC	3 cut(s)	429, 619, 710
RseI	CAYNNNNRTG	1 cut(s)	222
SaqAI	TTAA	3 cut(s)	552, 558, 687
SatI	GCNGC	1 cut(s)	342
Sau3AI	GATC	5 cut(s)	84, 91, 113, 214, 604
SchI	GAGTC	2 cut(s)	227, 319
ScrFI	CCNGG	1 cut(s)	372
SduI	GDGCHC	2 cut(s)	49, 302
SexAI	ACCWGGT	1 cut(s)	370
SfaNI	GCATC	2 cut(s)	214, 481
SmiMI	CAYNNNNRTG	1 cut(s)	222
Sse9I	AATT	3 cut(s)	30, 68, 134
SsiI	CCGC	4 cut(s)	356, 444, 665, 673
SspMI	CTAG	3 cut(s)	251, 441, 456
StyD4I	CCNGG	1 cut(s)	370
TaaI	ACNGT	2 cut(s)	428, 512
TaqI	TCGA	2 cut(s)	94, 276
TaqII	GACCGA	1 cut(s)	281
TasI	AATT	3 cut(s)	30, 68, 134
TfiI	GAWTC	2 cut(s)	37, 142
Tru1I	TTAA	3 cut(s)	552, 558, 687
Tru9I	TTAA	3 cut(s)	552, 558, 687
TscAI	CASTG	3 cut(s)	165, 267, 628
TseFI	GTSAC	3 cut(s)	201, 262, 322
TseI	GCWGC	1 cut(s)	341
Tsp45I	GTSAC	3 cut(s)	201, 262, 322
TspDTI	ATGAA	3 cut(s)	29, 308, 396
TspRI	CASTG	3 cut(s)	165, 267, 628
XapI	RAATTY	1 cut(s)	134
XmnI	GAANNNNTTC	1 cut(s)	590
XspI	CTAG	3 cut(s)	251, 441, 456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.