RLG00000002990

12-oxophytodienoate reductase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Reverse (-)
42742494 .. 42744674
2181 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002990

Sequence Viewer

Length: 1158 bp
ATGGGGGATTTTTCATCATCAGGACTCACCCTGTTCTCTTCTTACAAGATGGGCAGGCTCAATCTCTCTCACAGGGTGGTGCTTGCGCCATTGACAAGGTGTCGAGCTCCTAACGAAATTCCACAGCCAGCGATGATCGAGTATTATTCTCAGAGGTCAACCCCCGGCGGCCTTCTTATTACTGAAGCCACTTCGCTCTCCGACACGAGTGCTGGGTTTCCACGTGTTCCTGGGATTTACACAGATGAACAGGTTAAGAAATGGAAGAAGGTGGTGGACGCTGTTCAAGCCAAAGGTGCCATTATTTTCTGTCAACTTTTGCATGTAGGTCGTGCTTCTCATCAAGTTTACCAACCTAGTGGGGGTTCGCCGATTTCTTCAACCAACAATCCCATTTCAAATAGATGGAAAATTCTGTTGCCAGATGGGTCTCAAGAGACTTATGCTCAGCCACGACGCCTCGAAACCCATGAAATACCTCAGATTGTTGAGCAGTATCGCCACGCTGCCTTAAATGCTATTCGAGCAGATCCATGCGGCACACGGCGCTACCTCATTGATCAATTCCTAAAAGATGGGATCAACGATCGAACTGATGAATATGGTGGGTCGCTTGCAAACCGTTGCAAATTCTTGATTCAGATTGTTCAAGCAGTAGTTGAAGCCATTGGTGCTAACAAAGTTGCCGTCAGAATCTCACCGGCTATTGATTTCAATGATGCTACGGACTCCGACCCGATTGGCCTAGGCCTTTCAGTGATTGACAAGCTCAATCAGCTTCAATACAACGTAGGCTCAAAGCTCGCTTATCTCCATGTAACTCAGCCTCGTTTCTTTGCTCAATACAACGGAGGCTTGGCCGAGTCTGATCAAGACACAGATGCTCAATTCATGAGGACTTTGCGAGAAGCTTATCAAGGTACATTCATGGCTAGTGGAGGGTTTACGAGAGAACTAGGAATGGAAACCGTGGCTTCTGGCGATGCTGATTTAGTGTCATATGGCCGGAATTTTATCTCAAACCCTGACTTGGTGTTGAGGTTTAAGCTGAATGCTCCCTTGAACAAGTATATTAGGGAGACTTTCTACACCGATGACCCTGTAGTTGGGTACACAGACTACCCTTTTCTGGACAAAGAAAGTGTGAAAGAGGCTTAG

Protein Analysis

386

Amino Acids

42.68

Weight (kDa)

6.33

Isoelectric Point (pI)

30.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Oxidored_FMN PF00724 11 - 354 2.6e-69 NADH:flavin oxidoreductase / NADH oxidase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 296
AciI CCGC 2 cut(s) 168, 537
AclWI GGATC 2 cut(s) 524, 587
AcoI YGGCCR 2 cut(s) 858, 1003
AcsI RAATTY 4 cut(s) 117, 411, 629, 1009
AcuI CTGAAG 1 cut(s) 204
AcvI CACGTG 1 cut(s) 224
AcyI GRCGYC 1 cut(s) 457
AdeI CACNNNGTG 1 cut(s) 76
AfaI GTAC 2 cut(s) 922, 1112
AfiI CCNNNNNNNGG 4 cut(s) 362, 1030, 1106, 1129
AflIII ACRYGT 1 cut(s) 223
AgsI TTSAA 8 cut(s) 287, 381, 399, 650, 662, 715, 782, 1063
AhdI GACNNNNNGTC 1 cut(s) 99
AjnI CCWGG 1 cut(s) 229
AluBI AGCT 6 cut(s) 107, 769, 778, 802, 911, 1048
AluI AGCT 6 cut(s) 107, 769, 778, 802, 911, 1048
Alw21I GWGCWC 1 cut(s) 109
Alw26I GTCTC 3 cut(s) 431, 435, 1073
AlwI GGATC 2 cut(s) 524, 587
AoxI GGCC 5 cut(s) 169, 742, 748, 858, 1003
ApeKI GCWGC 1 cut(s) 506
ApoI RAATTY 4 cut(s) 117, 411, 629, 1009
ArsI GACNNNNNNTTYG 2 cut(s) 672, 704
AspA2I CCTAGG 1 cut(s) 745
AspLEI GCGC 2 cut(s) 88, 549
AsuC2I CCSGG 1 cut(s) 165
AsuHPI GGTGA 2 cut(s) 19, 690
AvrII CCTAGG 1 cut(s) 745
BanI GGYRCC 1 cut(s) 296
BanII GRGCYC 1 cut(s) 109
BauI CACGAG 1 cut(s) 205
BbrPI CACGTG 1 cut(s) 224
Bbv12I GWGCWC 1 cut(s) 109
BbvI GCAGC 1 cut(s) 493
BccI CCATC 4 cut(s) 43, 399, 419, 569
BceAI ACGGC 2 cut(s) 560, 671
BcgI CGANNNNNNTGC 4 cut(s) 191, 225, 311, 345
BciT130I CCWGG 1 cut(s) 231
BclI TGATCA 2 cut(s) 559, 868
BcnI CCSGG 1 cut(s) 165
BcoDI GTCTC 3 cut(s) 431, 435, 1073
BfaI CTAG 4 cut(s) 357, 746, 933, 956
BfmI CTRYAG 1 cut(s) 1101
BfoI RGCGCY 1 cut(s) 550
BisI GCNGC 3 cut(s) 169, 507, 538
BlnI CCTAGG 1 cut(s) 745
BlpI GCTNAGC 1 cut(s) 447
BlsI GCNGC 3 cut(s) 170, 508, 539
Bme1390I CCNGG 2 cut(s) 165, 231
BmeRI GACNNNNNGTC 1 cut(s) 99
BmiI GGNNCC 1 cut(s) 298
BmrFI CCNGG 2 cut(s) 165, 231
BmsI GCATC 3 cut(s) 709, 871, 973
Bpu1102I GCTNAGC 1 cut(s) 447
BpuEI CTTGAG 1 cut(s) 417
BpuMI CCSGG 1 cut(s) 165
BsaAI YACGTR 1 cut(s) 224
BsaHI GRCGYC 1 cut(s) 457
BsaI GGTCTC 1 cut(s) 435
BsaJI CCNNGG 4 cut(s) 163, 230, 745, 969
Bsc4I CCNNNNNNNGG 4 cut(s) 362, 1030, 1106, 1129
Bse118I RCCGGY 1 cut(s) 700
BseBI CCWGG 1 cut(s) 231
BseDI CCNNGG 4 cut(s) 163, 230, 745, 969
BseLI CCNNNNNNNGG 4 cut(s) 362, 1030, 1106, 1129
BseMII CTCAG 4 cut(s) 164, 461, 494, 836
BseXI GCAGC 1 cut(s) 493
BseYI CCCAGC 1 cut(s) 212
Bsh1285I CGRYCG 1 cut(s) 589
BshFI GGCC 5 cut(s) 171, 744, 750, 860, 1005
BshNI GGYRCC 1 cut(s) 296
BsiEI CGRYCG 1 cut(s) 589
BsiHKAI GWGCWC 1 cut(s) 109
BsiSI CCGG 3 cut(s) 165, 701, 1006
BslI CCNNNNNNNGG 4 cut(s) 362, 1030, 1106, 1129
BsmAI GTCTC 3 cut(s) 431, 435, 1073
BsmI GAATGC 1 cut(s) 1057
BsnI GGCC 5 cut(s) 171, 744, 750, 860, 1005
Bso31I GGTCTC 1 cut(s) 435
Bsp1286I GDGCHC 1 cut(s) 109
Bsp143I GATC 6 cut(s) 135, 529, 559, 579, 586, 868
Bsp1720I GCTNAGC 1 cut(s) 447
BspACI CCGC 2 cut(s) 168, 537
BspANI GGCC 5 cut(s) 171, 744, 750, 860, 1005
BspCNI CTCAG 4 cut(s) 163, 460, 493, 835
BspHI TCATGA 1 cut(s) 891
BspLI GGNNCC 1 cut(s) 298
BspPI GGATC 2 cut(s) 524, 587
BspT107I GGYRCC 1 cut(s) 296
BspTNI GGTCTC 1 cut(s) 435
BsrFI RCCGGY 1 cut(s) 700
BssAI RCCGGY 1 cut(s) 700
BssECI CCNNGG 4 cut(s) 163, 230, 745, 969
BssMI GATC 6 cut(s) 135, 529, 559, 579, 586, 868
BssNI GRCGYC 1 cut(s) 457
BssSI CACGAG 1 cut(s) 205
BssT1I CCWWGG 1 cut(s) 745
Bst2BI CACGAG 1 cut(s) 205
Bst2UI CCWGG 1 cut(s) 231
Bst4CI ACNGT 2 cut(s) 623, 970
Bst6I CTCTTC 1 cut(s) 43
BstACI GRCGYC 1 cut(s) 457
BstBAI YACGTR 1 cut(s) 224
BstC8I GCNNGC 5 cut(s) 56, 84, 129, 615, 804
BstDEI CTNAG 5 cut(s) 150, 447, 480, 822, 1155
BstDSI CCRYGG 1 cut(s) 969
BstH2I RGCGCY 1 cut(s) 550
BstHHI GCGC 2 cut(s) 88, 549
BstKTI GATC 6 cut(s) 138, 532, 562, 582, 589, 871
BstMAI GTCTC 3 cut(s) 431, 435, 1073
BstMBI GATC 6 cut(s) 135, 529, 559, 579, 586, 868
BstMCI CGRYCG 1 cut(s) 589
BstMWI GCNNNNNNNGC 7 cut(s) 287, 296, 515, 524, 546, 671, 775
BstNI CCWGG 1 cut(s) 231
BstNSI RCATGY 1 cut(s) 326
BstSCI CCNGG 2 cut(s) 163, 229
BstSFI CTRYAG 1 cut(s) 1101
BstV1I GCAGC 1 cut(s) 493
BstX2I RGATCY 1 cut(s) 529
BstXI CCANNNNNNTGG 1 cut(s) 359
BstYI RGATCY 1 cut(s) 529
BsuRI GGCC 5 cut(s) 171, 744, 750, 860, 1005
BtgI CCRYGG 1 cut(s) 969
BtgZI GCGATG 2 cut(s) 146, 996
BtsIMutI CAGTG 1 cut(s) 762
Cac8I GCNNGC 5 cut(s) 56, 84, 129, 615, 804
CciI TCATGA 1 cut(s) 891
CfoI GCGC 2 cut(s) 88, 549
Cfr10I RCCGGY 1 cut(s) 700
CseI GACGC 2 cut(s) 287, 465
Csp6I GTAC 2 cut(s) 921, 1111
CviAII CATG 6 cut(s) 323, 470, 534, 815, 892, 928
CviQI GTAC 2 cut(s) 921, 1111
DdeI CTNAG 5 cut(s) 150, 447, 480, 822, 1155
DpnI GATC 6 cut(s) 137, 531, 561, 581, 588, 870
DpnII GATC 6 cut(s) 135, 529, 559, 579, 586, 868
DraIII CACNNNGTG 1 cut(s) 76
DriI GACNNNNNGTC 1 cut(s) 99
EaeI YGGCCR 2 cut(s) 858, 1003
Eam1104I CTCTTC 1 cut(s) 43
Eam1105I GACNNNNNGTC 1 cut(s) 99
EarI CTCTTC 1 cut(s) 43
Ecl136II GAGCTC 1 cut(s) 107
Eco130I CCWWGG 1 cut(s) 745
Eco147I AGGCCT 1 cut(s) 750
Eco24I GRGCYC 1 cut(s) 109
Eco31I GGTCTC 1 cut(s) 435
Eco53kI GAGCTC 1 cut(s) 107
Eco57I CTGAAG 1 cut(s) 204
Eco72I CACGTG 1 cut(s) 224
EcoICRI GAGCTC 1 cut(s) 107
EcoRII CCWGG 1 cut(s) 229
EcoT14I CCWWGG 1 cut(s) 745
EcoT38I GRGCYC 1 cut(s) 109
ErhI CCWWGG 1 cut(s) 745
FaeI CATG 6 cut(s) 326, 473, 537, 818, 895, 931
FatI CATG 6 cut(s) 322, 469, 533, 814, 891, 927
FauNDI CATATG 1 cut(s) 1000
FbaI TGATCA 2 cut(s) 559, 868
Fnu4HI GCNGC 3 cut(s) 169, 507, 538
FriOI GRGCYC 1 cut(s) 109
Fsp4HI GCNGC 3 cut(s) 169, 507, 538
FspBI CTAG 4 cut(s) 357, 746, 933, 956
GlaI GCGC 2 cut(s) 87, 548
GluI GCNGC 3 cut(s) 169, 507, 538
GsaI CCCAGC 1 cut(s) 216
HaeII RGCGCY 1 cut(s) 550
HaeIII GGCC 5 cut(s) 171, 744, 750, 860, 1005
HapII CCGG 3 cut(s) 165, 701, 1006
HgaI GACGC 2 cut(s) 287, 465
HhaI GCGC 2 cut(s) 88, 549
Hin1I GRCGYC 1 cut(s) 457
Hin1II CATG 6 cut(s) 326, 473, 537, 818, 895, 931
Hin6I GCGC 2 cut(s) 86, 547
HinP1I GCGC 2 cut(s) 86, 547
HincII GTYRAC 2 cut(s) 159, 314
HindII GTYRAC 2 cut(s) 159, 314
HindIII AAGCTT 1 cut(s) 909
HinfI GANTC 5 cut(s) 24, 637, 693, 728, 863
HpaII CCGG 3 cut(s) 165, 701, 1006
HphI GGTGA 2 cut(s) 19, 690
Hpy166II GTNNAC 6 cut(s) 159, 277, 314, 349, 945, 1113
Hpy188I TCNGA 7 cut(s) 153, 202, 483, 642, 692, 733, 868
Hpy188III TCNNGA 6 cut(s) 21, 434, 634, 872, 892, 1130
Hpy8I GTNNAC 6 cut(s) 159, 277, 314, 349, 945, 1113
Hpy99I CGWCG 1 cut(s) 459
HpyAV CCTTC 2 cut(s) 182, 262
HpyCH4III ACNGT 2 cut(s) 623, 970
HpyCH4IV ACGT 2 cut(s) 223, 789
HpyCH4V TGCA 3 cut(s) 322, 617, 627
HpyF10VI GCNNNNNNNGC 7 cut(s) 287, 296, 515, 524, 546, 671, 775
HpyF3I CTNAG 5 cut(s) 150, 447, 480, 822, 1155
HpySE526I ACGT 2 cut(s) 223, 789
Hsp92I GRCGYC 1 cut(s) 457
Hsp92II CATG 6 cut(s) 326, 473, 537, 818, 895, 931
HspAI GCGC 2 cut(s) 86, 547
Ksp22I TGATCA 2 cut(s) 559, 868
Kzo9I GATC 6 cut(s) 135, 529, 559, 579, 586, 868
LmnI GCTCC 2 cut(s) 112, 1060
Lsp1109I GCAGC 1 cut(s) 493
LweI GCATC 3 cut(s) 709, 871, 973
MaeI CTAG 4 cut(s) 357, 746, 933, 956
MaeII ACGT 2 cut(s) 223, 789
MaeIII GTNAC 1 cut(s) 817
MalI GATC 6 cut(s) 137, 531, 561, 581, 588, 870
MboI GATC 6 cut(s) 135, 529, 559, 579, 586, 868
MboII GAAGA 3 cut(s) 30, 277, 369
MflI RGATCY 1 cut(s) 529
MhlI GDGCHC 1 cut(s) 109
MluCI AATT 6 cut(s) 117, 411, 563, 629, 887, 1009
MlyI GAGTC 3 cut(s) 18, 722, 872
MmeI TCCRAC 2 cut(s) 225, 756
MseI TTAA 3 cut(s) 255, 512, 1044
MspI CCGG 3 cut(s) 165, 701, 1006
MspR9I CCNGG 2 cut(s) 165, 231
Mva1269I GAATGC 1 cut(s) 1057
MvaI CCWGG 1 cut(s) 231
MwoI GCNNNNNNNGC 7 cut(s) 287, 296, 515, 524, 546, 671, 775
NciI CCSGG 1 cut(s) 165
NdeI CATATG 1 cut(s) 1000
NdeII GATC 6 cut(s) 135, 529, 559, 579, 586, 868
NlaIII CATG 6 cut(s) 326, 473, 537, 818, 895, 931
NlaIV GGNNCC 1 cut(s) 298
NmeAIII GCCGAG 1 cut(s) 886
NspI RCATGY 1 cut(s) 326
PagI TCATGA 1 cut(s) 891
PceI AGGCCT 1 cut(s) 750
PctI GAATGC 1 cut(s) 1057
PfeI GAWTC 2 cut(s) 637, 693
PkrI GCNGC 3 cut(s) 170, 508, 539
Ple19I CGATCG 1 cut(s) 589
PleI GAGTC 3 cut(s) 18, 722, 871
PmaCI CACGTG 1 cut(s) 224
PmlI CACGTG 1 cut(s) 224
PpsI GAGTC 3 cut(s) 18, 722, 871
Ppu21I YACGTR 1 cut(s) 224
Psp124BI GAGCTC 1 cut(s) 109
Psp6I CCWGG 1 cut(s) 229
PspCI CACGTG 1 cut(s) 224
PspFI CCCAGC 1 cut(s) 212
PspGI CCWGG 1 cut(s) 229
PspN4I GGNNCC 1 cut(s) 298
PsuI RGATCY 1 cut(s) 529
PvuI CGATCG 1 cut(s) 589
RsaI GTAC 2 cut(s) 922, 1112
RsaNI GTAC 2 cut(s) 921, 1111
SacI GAGCTC 1 cut(s) 109
SaqAI TTAA 3 cut(s) 255, 512, 1044
SatI GCNGC 3 cut(s) 169, 507, 538
Sau3AI GATC 6 cut(s) 135, 529, 559, 579, 586, 868
SchI GAGTC 3 cut(s) 18, 722, 872
ScrFI CCNGG 2 cut(s) 165, 231
SduI GDGCHC 1 cut(s) 109
SfaNI GCATC 3 cut(s) 709, 871, 973
SfcI CTRYAG 1 cut(s) 1101
SmlI CTYRAG 1 cut(s) 432
SmoI CTYRAG 1 cut(s) 432
Sse9I AATT 6 cut(s) 117, 411, 563, 629, 887, 1009
SseBI AGGCCT 1 cut(s) 750
SsiI CCGC 2 cut(s) 168, 537
SspMI CTAG 4 cut(s) 357, 746, 933, 956
SstI GAGCTC 1 cut(s) 109
StuI AGGCCT 1 cut(s) 750
StyD4I CCNGG 2 cut(s) 163, 229
StyI CCWWGG 1 cut(s) 745
TaaI ACNGT 2 cut(s) 623, 970
TaiI ACGT 2 cut(s) 226, 792
TaqI TCGA 5 cut(s) 103, 138, 462, 523, 589
TasI AATT 6 cut(s) 117, 411, 563, 629, 887, 1009
TauI GCSGC 2 cut(s) 171, 540
TfiI GAWTC 2 cut(s) 637, 693
Tru1I TTAA 3 cut(s) 255, 512, 1044
Tru9I TTAA 3 cut(s) 255, 512, 1044
TscAI CASTG 1 cut(s) 762
TseI GCWGC 1 cut(s) 506
TspDTI ATGAA 5 cut(s) 261, 486, 612, 880, 916
TspGWI ACGGA 2 cut(s) 740, 864
TspRI CASTG 1 cut(s) 762
XapI RAATTY 4 cut(s) 117, 411, 629, 1009
XceI RCATGY 1 cut(s) 326
XmaJI CCTAGG 1 cut(s) 745
XspI CTAG 4 cut(s) 357, 746, 933, 956
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.