FvH4_1g08453

12-oxophytodienoate reductase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Forward (+)
4494916 .. 4497092
2177 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g08453.t1

Sequence Viewer

Length: 1170 bp
ATGGCAGATTCTTCATCCACGGGTGGACTCACTCTGTTCTCTCCTTACAAGATGGGCAAGTTCAACCTGTCTCATAGAGTGGTGCTTGCGCCATTGACGAGGTGTCGAGCGTTGAACCAACTTCCGAACTCGGCGCTGGTCGAGTACTATTCTCAGAGGTCAACCCCCGGTGGCCTTCTAATCACTGAAGGCACTTGGCCGTCCGACCAAAGCGCCGGGTTTCCACATGTTCCTGGGATTTACACCGATGAACAAGTTGAGGCATGGAAGAATGTGGTCGATGCTGTTCATGCCAAAGGTGCCATCATTTTCTGTCAACTTTGGCATGTAGGTCGTGCTTCTCATCAAGTTTTTCAACCAGGTGGGGGGTCGCCAATTTCTTCAACCAGCAATCCCATCTCAAAGAAGTGGAAAGTTGCGTTGCCTGATGGGTCTCTTGACGTTCACTCTGAACCTCGACGCCTCGAGACCCAAGAAATACCCCAGATTGTTGAGCAGTACCGTCAGGCTGCCTTGAATGCCATTCGAGCAGGTTTTGATGGAGTTGAGATCCATTCGGCACATGGCTACCTCATCGATCAATTCTTGAAAGATGGGGTCAATGATCGAACTGACGAGTACGGTGGCTCGCTTGCAAACCGCTGCAAGTTCTTGATCCAAACTGTTGAAGCAGTAGTTGAATCCCTTGGTGCTGATAGAGTTGCCGTCAGAATCTCACCAGCTATTGATTTCTATGATGCTACAGACGCCGACCCGATTGGCCTAGGCTTGGCAGTGATTGAAAGACTCAACAAGCTTCAACATAACATAGGCTCAAAGCTCGCTTATCTTCATGTGACTCGGCCTCGTTTGACTTTGACCGCCATTATGACGTCGGTGCCGGCAGAGGTTGATGAAGACAGAGAAGCTCAATTTATGAGGACTTTGCGGGAAGCTTATGAAGGGGCGTTCATGGCTAGTGGAGGGTTTACTAGGGAGCTAGGAATGAAAACTGTGTCTTCTGGTGATGCCGATTTAGTGTCATATGGCCGGGATTTTATCTCAAACCCTGACTTGGTGTTGAGGTTTAGGCTGAATGCTCCCTTGAACAAGTATAATAGGGAGACTTTCTACACCCATGACCCTGTAGTTGGGTACACAGACTACCCTTTTCTGAACATAGAAAGTTGA

Protein Analysis

390

Amino Acids

42.89

Weight (kDa)

5.79

Isoelectric Point (pI)

38.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Oxidored_FMN PF00724 12 - 361 7.6e-85 NADH:flavin oxidoreductase / NADH oxidase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 875
Acc36I ACCTGC 1 cut(s) 521
AccB1I GGYRCC 2 cut(s) 299, 877
AciI CCGC 3 cut(s) 640, 861, 928
AclWI GGATC 2 cut(s) 544, 649
AcoI YGGCCR 2 cut(s) 197, 1027
AcuI CTGAAG 1 cut(s) 207
AcyI GRCGYC 3 cut(s) 460, 747, 872
AfaI GTAC 4 cut(s) 146, 500, 620, 1136
AfiI CCNNNNNNNGG 4 cut(s) 365, 769, 1054, 1130
AflIII ACRYGT 1 cut(s) 226
AhdI GACNNNNNGTC 1 cut(s) 102
AjnI CCWGG 2 cut(s) 232, 358
AluBI AGCT 6 cut(s) 722, 796, 820, 908, 935, 979
AluI AGCT 6 cut(s) 722, 796, 820, 908, 935, 979
Alw26I GTCTC 4 cut(s) 75, 438, 461, 1097
AlwI GGATC 2 cut(s) 544, 649
Ama87I CYCGRG 1 cut(s) 464
AoxI GGCC 5 cut(s) 172, 197, 760, 842, 1027
ApeKI GCWGC 2 cut(s) 509, 642
AspA2I CCTAGG 1 cut(s) 763
AspLEI GCGC 3 cut(s) 91, 136, 215
AsuC2I CCSGG 3 cut(s) 168, 217, 1031
AsuHPI GGTGA 2 cut(s) 708, 1016
AvaI CYCGRG 1 cut(s) 464
AvrII CCTAGG 1 cut(s) 763
BanI GGYRCC 2 cut(s) 299, 877
BbsI GAAGAC 2 cut(s) 903, 990
BbvI GCAGC 2 cut(s) 496, 629
BccI CCATC 6 cut(s) 46, 311, 404, 422, 533, 587
BceAI ACGGC 2 cut(s) 184, 689
BcgI CGANNNNNNTGC 2 cut(s) 314, 348
BciT130I CCWGG 2 cut(s) 234, 360
BcnI CCSGG 3 cut(s) 168, 217, 1031
BcoDI GTCTC 4 cut(s) 75, 438, 461, 1097
BfaI CTAG 4 cut(s) 764, 957, 972, 980
BfmI CTRYAG 2 cut(s) 741, 1125
BfoI RGCGCY 2 cut(s) 137, 216
BfuAI ACCTGC 1 cut(s) 521
BisI GCNGC 2 cut(s) 510, 643
BlnI CCTAGG 1 cut(s) 763
BlsI GCNGC 2 cut(s) 511, 644
BmcAI AGTACT 1 cut(s) 146
Bme1390I CCNGG 5 cut(s) 168, 217, 234, 360, 1031
BmeRI GACNNNNNGTC 1 cut(s) 102
BmeT110I CYCGRG 1 cut(s) 464
BmiI GGNNCC 2 cut(s) 301, 879
BmrFI CCNGG 5 cut(s) 168, 217, 234, 360, 1031
BmsI GCATC 3 cut(s) 271, 727, 997
BpiI GAAGAC 2 cut(s) 903, 990
BpuMI CCSGG 3 cut(s) 168, 217, 1031
Bsa29I ATCGAT 1 cut(s) 576
BsaHI GRCGYC 3 cut(s) 460, 747, 872
BsaI GGTCTC 2 cut(s) 438, 461
BsaJI CCNNGG 5 cut(s) 18, 166, 233, 685, 763
Bsc4I CCNNNNNNNGG 4 cut(s) 365, 769, 1054, 1130
Bse118I RCCGGY 1 cut(s) 880
BseBI CCWGG 2 cut(s) 234, 360
BseCI ATCGAT 1 cut(s) 576
BseDI CCNNGG 5 cut(s) 18, 166, 233, 685, 763
BseGI GGATG 1 cut(s) 14
BseLI CCNNNNNNNGG 4 cut(s) 365, 769, 1054, 1130
BseMII CTCAG 1 cut(s) 167
BseXI GCAGC 2 cut(s) 496, 629
BshFI GGCC 5 cut(s) 174, 199, 762, 844, 1029
BshNI GGYRCC 2 cut(s) 299, 877
BshVI ATCGAT 1 cut(s) 576
BsiHKCI CYCGRG 1 cut(s) 464
BsiSI CCGG 4 cut(s) 168, 216, 881, 1030
BslI CCNNNNNNNGG 4 cut(s) 365, 769, 1054, 1130
BsmAI GTCTC 4 cut(s) 75, 438, 461, 1097
BsmI GAATGC 2 cut(s) 523, 1081
BsnI GGCC 5 cut(s) 174, 199, 762, 844, 1029
Bso31I GGTCTC 2 cut(s) 438, 461
BsoBI CYCGRG 1 cut(s) 464
Bsp143I GATC 4 cut(s) 549, 577, 604, 654
BspACI CCGC 3 cut(s) 640, 861, 928
BspANI GGCC 5 cut(s) 174, 199, 762, 844, 1029
BspCNI CTCAG 1 cut(s) 166
BspDI ATCGAT 1 cut(s) 576
BspLI GGNNCC 2 cut(s) 301, 879
BspMI ACCTGC 1 cut(s) 521
BspPI GGATC 2 cut(s) 544, 649
BspT107I GGYRCC 2 cut(s) 299, 877
BspTNI GGTCTC 2 cut(s) 438, 461
BsrFI RCCGGY 1 cut(s) 880
BssAI RCCGGY 1 cut(s) 880
BssECI CCNNGG 5 cut(s) 18, 166, 233, 685, 763
BssMI GATC 4 cut(s) 549, 577, 604, 654
BssNI GRCGYC 3 cut(s) 460, 747, 872
BssT1I CCWWGG 2 cut(s) 685, 763
Bst2UI CCWGG 2 cut(s) 234, 360
Bst4CI ACNGT 4 cut(s) 503, 623, 664, 994
BstACI GRCGYC 3 cut(s) 460, 747, 872
BstC8I GCNNGC 5 cut(s) 87, 629, 633, 822, 882
BstDEI CTNAG 1 cut(s) 153
BstDSI CCRYGG 1 cut(s) 18
BstF5I GGATG 1 cut(s) 14
BstH2I RGCGCY 2 cut(s) 137, 216
BstHHI GCGC 3 cut(s) 91, 136, 215
BstKTI GATC 4 cut(s) 552, 580, 607, 657
BstMAI GTCTC 4 cut(s) 75, 438, 461, 1097
BstMBI GATC 4 cut(s) 549, 577, 604, 654
BstMWI GCNNNNNNNGC 6 cut(s) 290, 299, 518, 527, 746, 953
BstNI CCWGG 2 cut(s) 234, 360
BstNSI RCATGY 2 cut(s) 230, 329
BstSCI CCNGG 5 cut(s) 166, 215, 232, 358, 1029
BstSFI CTRYAG 2 cut(s) 741, 1125
BstV1I GCAGC 2 cut(s) 496, 629
BstV2I GAAGAC 2 cut(s) 903, 990
BstX2I RGATCY 1 cut(s) 549
BstYI RGATCY 1 cut(s) 549
Bsu15I ATCGAT 1 cut(s) 576
BsuRI GGCC 5 cut(s) 174, 199, 762, 844, 1029
BsuTUI ATCGAT 1 cut(s) 576
BtgI CCRYGG 1 cut(s) 18
BtsCI GGATG 1 cut(s) 14
BtsI GCAGTG 1 cut(s) 780
BtsIMutI CAGTG 2 cut(s) 183, 780
BveI ACCTGC 1 cut(s) 521
Cac8I GCNNGC 5 cut(s) 87, 629, 633, 822, 882
CfoI GCGC 3 cut(s) 91, 136, 215
Cfr10I RCCGGY 1 cut(s) 880
ClaI ATCGAT 1 cut(s) 576
CseI GACGC 2 cut(s) 468, 755
CsiI ACCWGGT 1 cut(s) 358
Csp6I GTAC 4 cut(s) 145, 499, 619, 1135
CviAII CATG 8 cut(s) 227, 264, 290, 326, 563, 833, 952, 1118
CviQI GTAC 4 cut(s) 145, 499, 619, 1135
DdeI CTNAG 1 cut(s) 153
DpnI GATC 4 cut(s) 551, 579, 606, 656
DpnII GATC 4 cut(s) 549, 577, 604, 654
DriI GACNNNNNGTC 1 cut(s) 102
EaeI YGGCCR 2 cut(s) 197, 1027
Eam1105I GACNNNNNGTC 1 cut(s) 102
Eco130I CCWWGG 2 cut(s) 685, 763
Eco31I GGTCTC 2 cut(s) 438, 461
Eco57I CTGAAG 1 cut(s) 207
Eco88I CYCGRG 1 cut(s) 464
EcoRII CCWGG 2 cut(s) 232, 358
EcoT14I CCWWGG 2 cut(s) 685, 763
ErhI CCWWGG 2 cut(s) 685, 763
FaeI CATG 8 cut(s) 230, 267, 293, 329, 566, 836, 955, 1121
FatI CATG 8 cut(s) 226, 263, 289, 325, 562, 832, 951, 1117
FauI CCCGC 1 cut(s) 921
FauNDI CATATG 1 cut(s) 1024
Fnu4HI GCNGC 2 cut(s) 510, 643
Fsp4HI GCNGC 2 cut(s) 510, 643
FspBI CTAG 4 cut(s) 764, 957, 972, 980
GlaI GCGC 3 cut(s) 90, 135, 214
GluI GCNGC 2 cut(s) 510, 643
HaeII RGCGCY 2 cut(s) 137, 216
HaeIII GGCC 5 cut(s) 174, 199, 762, 844, 1029
HapII CCGG 4 cut(s) 168, 216, 881, 1030
HgaI GACGC 2 cut(s) 468, 755
HhaI GCGC 3 cut(s) 91, 136, 215
Hin1I GRCGYC 3 cut(s) 460, 747, 872
Hin1II CATG 8 cut(s) 230, 267, 293, 329, 566, 836, 955, 1121
Hin6I GCGC 3 cut(s) 89, 134, 213
HinP1I GCGC 3 cut(s) 89, 134, 213
HincII GTYRAC 2 cut(s) 162, 317
HindII GTYRAC 2 cut(s) 162, 317
HindIII AAGCTT 2 cut(s) 794, 933
HinfI GANTC 6 cut(s) 8, 27, 680, 711, 786, 838
HpaII CCGG 4 cut(s) 168, 216, 881, 1030
HphI GGTGA 2 cut(s) 708, 1016
Hpy166II GTNNAC 6 cut(s) 26, 162, 317, 445, 969, 1137
Hpy188I TCNGA 6 cut(s) 126, 156, 205, 451, 710, 1155
Hpy188III TCNNGA 4 cut(s) 437, 466, 586, 652
Hpy8I GTNNAC 6 cut(s) 26, 162, 317, 445, 969, 1137
Hpy99I CGWCG 2 cut(s) 462, 877
HpyAV CCTTC 3 cut(s) 182, 185, 935
HpyCH4III ACNGT 4 cut(s) 503, 623, 664, 994
HpyCH4IV ACGT 2 cut(s) 441, 872
HpyCH4V TGCA 2 cut(s) 635, 645
HpyF10VI GCNNNNNNNGC 6 cut(s) 290, 299, 518, 527, 746, 953
HpyF3I CTNAG 1 cut(s) 153
HpySE526I ACGT 2 cut(s) 441, 872
Hsp92I GRCGYC 3 cut(s) 460, 747, 872
Hsp92II CATG 8 cut(s) 230, 267, 293, 329, 566, 836, 955, 1121
HspAI GCGC 3 cut(s) 89, 134, 213
KroI GCCGGC 1 cut(s) 880
KroNI GCCGGC 1 cut(s) 882
Kzo9I GATC 4 cut(s) 549, 577, 604, 654
LmnI GCTCC 2 cut(s) 976, 1084
Lsp1109I GCAGC 2 cut(s) 496, 629
LweI GCATC 3 cut(s) 271, 727, 997
MabI ACCWGGT 1 cut(s) 358
MaeI CTAG 4 cut(s) 764, 957, 972, 980
MaeII ACGT 2 cut(s) 441, 872
MaeIII GTNAC 1 cut(s) 835
MalI GATC 4 cut(s) 551, 579, 606, 656
MboI GATC 4 cut(s) 549, 577, 604, 654
MboII GAAGA 6 cut(s) 3, 280, 372, 821, 908, 990
MflI RGATCY 1 cut(s) 549
MluCI AATT 3 cut(s) 375, 581, 911
MlyI GAGTC 3 cut(s) 21, 780, 832
MmeI TCCRAC 1 cut(s) 228
MroNI GCCGGC 1 cut(s) 880
MspA1I CMGCKG 1 cut(s) 642
MspI CCGG 4 cut(s) 168, 216, 881, 1030
MspR9I CCNGG 5 cut(s) 168, 217, 234, 360, 1031
Mva1269I GAATGC 2 cut(s) 523, 1081
MvaI CCWGG 2 cut(s) 234, 360
MwoI GCNNNNNNNGC 6 cut(s) 290, 299, 518, 527, 746, 953
NaeI GCCGGC 1 cut(s) 882
NciI CCSGG 3 cut(s) 168, 217, 1031
NdeI CATATG 1 cut(s) 1024
NdeII GATC 4 cut(s) 549, 577, 604, 654
NgoMIV GCCGGC 1 cut(s) 880
NlaIII CATG 8 cut(s) 230, 267, 293, 329, 566, 836, 955, 1121
NlaIV GGNNCC 2 cut(s) 301, 879
NmeAIII GCCGAG 2 cut(s) 110, 820
NmuCI GTSAC 1 cut(s) 835
NspI RCATGY 2 cut(s) 230, 329
PaeR7I CTCGAG 1 cut(s) 464
PciI ACATGT 1 cut(s) 226
PctI GAATGC 2 cut(s) 523, 1081
PdiI GCCGGC 1 cut(s) 882
PfeI GAWTC 3 cut(s) 8, 680, 711
PkrI GCNGC 2 cut(s) 511, 644
PleI GAGTC 3 cut(s) 21, 780, 832
PpsI GAGTC 3 cut(s) 21, 780, 832
PscI ACATGT 1 cut(s) 226
Psp6I CCWGG 2 cut(s) 232, 358
PspGI CCWGG 2 cut(s) 232, 358
PspN4I GGNNCC 2 cut(s) 301, 879
PsuI RGATCY 1 cut(s) 549
RsaI GTAC 4 cut(s) 146, 500, 620, 1136
RsaNI GTAC 4 cut(s) 145, 499, 619, 1135
SatI GCNGC 2 cut(s) 510, 643
Sau3AI GATC 4 cut(s) 549, 577, 604, 654
ScaI AGTACT 1 cut(s) 146
SchI GAGTC 3 cut(s) 21, 780, 832
ScrFI CCNGG 5 cut(s) 168, 217, 234, 360, 1031
SexAI ACCWGGT 1 cut(s) 358
SfaNI GCATC 3 cut(s) 271, 727, 997
SfcI CTRYAG 2 cut(s) 741, 1125
Sfr274I CTCGAG 1 cut(s) 464
SlaI CTCGAG 1 cut(s) 464
SmlI CTYRAG 1 cut(s) 464
SmoI CTYRAG 1 cut(s) 464
Sse9I AATT 3 cut(s) 375, 581, 911
SsiI CCGC 3 cut(s) 640, 861, 928
SspMI CTAG 4 cut(s) 764, 957, 972, 980
StyD4I CCNGG 5 cut(s) 166, 215, 232, 358, 1029
StyI CCWWGG 2 cut(s) 685, 763
TaaI ACNGT 4 cut(s) 503, 623, 664, 994
TaiI ACGT 2 cut(s) 444, 875
TaqI TCGA 8 cut(s) 106, 141, 279, 457, 465, 526, 576, 607
TasI AATT 3 cut(s) 375, 581, 911
TatI WGTACW 1 cut(s) 144
TfiI GAWTC 3 cut(s) 8, 680, 711
TscAI CASTG 2 cut(s) 190, 780
TseFI GTSAC 1 cut(s) 835
TseI GCWGC 2 cut(s) 509, 642
Tsp45I GTSAC 1 cut(s) 835
TspDTI ATGAA 7 cut(s) 264, 278, 821, 909, 940, 954, 1001
TspRI CASTG 2 cut(s) 190, 780
XceI RCATGY 2 cut(s) 230, 329
XcmI CCANNNNNNNNNTGG 1 cut(s) 560
XhoI CTCGAG 1 cut(s) 464
XmaJI CCTAGG 1 cut(s) 763
XspI CTAG 4 cut(s) 764, 957, 972, 980
ZraI GACGTC 1 cut(s) 873
ZrmI AGTACT 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.