Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000870

Physical Location & Seq

Genomic Coordinates Forward (+)

7214904 .. 7230696

Gene Structure 15793 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG092400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGTTTAAATGGCAGAGCTTTGTTTTGCAATTTTTCAACCTGCTGGGGGATCACCAATTTCTTCAACCAACAACCCCATCTCAAAGAGATGGAAAGTACGTTCTCTTGCCAGATGGGTCTCATGACGCTTACTCTGAACCTCGACGCCTCGAGACCCACGAAATACCCCAGATCGTTGAGCAGTATCGCCACGCTGCCTTGAATGCCATTCGCGCAGATAGTTCCAAGAACAACGTACGCTACGATGCGTGGCCTGCAAAAGGGTACGCCGTCTCAGCCTATGACGACGGCGCCGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009605 GO:0009607 GO:0009620 GO:0009694 GO:0009695 GO:0009791 GO:0009908 GO:0009987 GO:0010035 GO:0010193 GO:0010817 GO:0016053 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0019752 GO:0022414 GO:0031407 GO:0031408 GO:0032501 GO:0032502 GO:0032787 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042579 GO:0042802 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046677 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0055114 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0090567 GO:0099402 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

99

Amino Acids

11.33

Weight (kDa)

6.02

Isoelectric Point (pI)

45.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06050 AT2G06050 AT2G06050
fragaria_vesca	FvH4_1g08451 FvH4_1g08452 FvH4_1g08453 FvH4_1g08454 FvH4_1g08510 FvH4_1g08510 FvH4_1g08510 FvH4_1g08510
malus_domestica	MD00G1142600.v1.1 MD02G1089100.v1.1 MD12G1067300.v1.1 MD15G1216200.v1.1
prunus_persica	Prupe.7G200800_v2.0.a1
pyrus_communis	pycom02g07130 pycom15g19180
rosa_chinensis	RchiOBHm_Chr2g0094561 RchiOBHm_Chr2g0094611 RchiOBHm_Chr2g0094631 RchiOBHm_Chr2g0094641 RchiOBHm_Chr2g0150041 RchiOBHm_Chr7g0211621 RchiOBHm_Chr7g0230281
rosa_laevigata	RLG00000002990 RLG00000016504 RLG00000016506 RLG00000016507 RLG00000020462
rosa_multiflora	Rmu_co8133296.1_g000001 Rmu_co8390375.1_g000001 Rmu_sc0003760.1_g000017 Rmu_sc0004232.1_g000012 Rmu_sc0004359.1_g000033 Rmu_sc0004359.1_g000036 Rmu_sc0006422.1_g000001 Rmu_sc0009445.1_g000018 Rmu_sc0017068.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097490 Rroxscaffold_2G00147030 Rroxscaffold_2G00147040 Rroxscaffold_2G00147050 Rroxscaffold_3G00247670
rosa_rugosa	Rorug02G0045400 Rorug02G0045400 Rorug02G0045600 Rorug02G0045700 Rorug02G0418000 Rorug07G0126300
rosa_samantha	Rh2AG093100 Rh2BG093400 Rh2BG093700 Rh2BG489500 Rh2CG095800 Rh2CG096000 Rh2DG092200 Rh2DG092400 Rh7AG259000 Rh7BG253300 Rh7CG276100 Rh7DG266600
rosa_wichuraiana	Rw0G003550 Rw0G003560 Rw2G038940 Rw7G022140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	48
AccB1I	GGYRCC	1 cut(s)	290
AccII	CGCG	1 cut(s)	213
AciI	CCGC	1 cut(s)	294
AclWI	GGATC	1 cut(s)	57
AcyI	GRCGYC	2 cut(s)	145, 291
AfaI	GTAC	3 cut(s)	98, 237, 266
AfiI	CCNNNNNNNGG	2 cut(s)	46, 260
AgsI	TTSAA	3 cut(s)	37, 65, 202
AloI	GAACNNNNNNTCC	2 cut(s)	84, 116
AluBI	AGCT	1 cut(s)	18
AluI	AGCT	1 cut(s)	18
Alw26I	GTCTC	3 cut(s)	123, 146, 277
AlwI	GGATC	1 cut(s)	57
Ama87I	CYCGRG	1 cut(s)	149
AoxI	GGCC	1 cut(s)	251
ApeKI	GCWGC	1 cut(s)	194
AspLEI	GCGC	2 cut(s)	215, 293
AsuHPI	GGTGA	1 cut(s)	44
AvaI	CYCGRG	1 cut(s)	149
BanI	GGYRCC	1 cut(s)	290
BbvI	GCAGC	1 cut(s)	181
BccI	CCATC	3 cut(s)	83, 85, 107
BceAI	ACGGC	1 cut(s)	254
BcoDI	GTCTC	3 cut(s)	123, 146, 277
BfoI	RGCGCY	1 cut(s)	294
BfuAI	ACCTGC	1 cut(s)	48
BisI	GCNGC	2 cut(s)	195, 294
BlsI	GCNGC	2 cut(s)	196, 295
BmeT110I	CYCGRG	1 cut(s)	149
BmiI	GGNNCC	1 cut(s)	292
BmsI	GCATC	1 cut(s)	235
BsaHI	GRCGYC	2 cut(s)	145, 291
BsaI	GGTCTC	2 cut(s)	123, 146
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 260
BseLI	CCNNNNNNNGG	2 cut(s)	46, 260
BseMII	CTCAG	1 cut(s)	288
BseXI	GCAGC	1 cut(s)	181
BseYI	CCCAGC	1 cut(s)	43
Bsh1236I	CGCG	1 cut(s)	213
BshFI	GGCC	1 cut(s)	253
BshNI	GGYRCC	1 cut(s)	290
BsiHKCI	CYCGRG	1 cut(s)	149
BsiWI	CGTACG	1 cut(s)	235
BslI	CCNNNNNNNGG	2 cut(s)	46, 260
BsmAI	GTCTC	3 cut(s)	123, 146, 277
BsmBI	CGTCTC	1 cut(s)	277
BsmI	GAATGC	1 cut(s)	208
BsnI	GGCC	1 cut(s)	253
Bso31I	GGTCTC	2 cut(s)	123, 146
BsoBI	CYCGRG	1 cut(s)	149
Bsp143I	GATC	2 cut(s)	49, 171
BspACI	CCGC	1 cut(s)	294
BspANI	GGCC	1 cut(s)	253
BspCNI	CTCAG	1 cut(s)	287
BspFNI	CGCG	1 cut(s)	213
BspHI	TCATGA	1 cut(s)	121
BspLI	GGNNCC	1 cut(s)	292
BspMI	ACCTGC	1 cut(s)	48
BspPI	GGATC	1 cut(s)	57
BspT107I	GGYRCC	1 cut(s)	290
BspTNI	GGTCTC	2 cut(s)	123, 146
BssMI	GATC	2 cut(s)	49, 171
BssNI	GRCGYC	2 cut(s)	145, 291
BstACI	GRCGYC	2 cut(s)	145, 291
BstC8I	GCNNGC	1 cut(s)	255
BstDEI	CTNAG	1 cut(s)	274
BstENI	CCTNNNNNAGG	1 cut(s)	258
BstFNI	CGCG	1 cut(s)	213
BstH2I	RGCGCY	1 cut(s)	294
BstHHI	GCGC	2 cut(s)	215, 293
BstKTI	GATC	2 cut(s)	52, 174
BstMAI	GTCTC	3 cut(s)	123, 146, 277
BstMBI	GATC	2 cut(s)	49, 171
BstMWI	GCNNNNNNNGC	4 cut(s)	203, 212, 254, 275
BstUI	CGCG	1 cut(s)	213
BstV1I	GCAGC	1 cut(s)	181
BsuRI	GGCC	1 cut(s)	253
BveI	ACCTGC	1 cut(s)	48
Cac8I	GCNNGC	1 cut(s)	255
CciI	TCATGA	1 cut(s)	121
CfoI	GCGC	2 cut(s)	215, 293
CseI	GACGC	2 cut(s)	134, 153
Csp6I	GTAC	3 cut(s)	97, 236, 265
CviAII	CATG	1 cut(s)	122
CviJI	RGCY	3 cut(s)	18, 253, 278
CviKI_1	RGCY	3 cut(s)	18, 253, 278
CviQI	GTAC	3 cut(s)	97, 236, 265
DdeI	CTNAG	1 cut(s)	274
DinI	GGCGCC	1 cut(s)	292
DpnI	GATC	2 cut(s)	51, 173
DpnII	GATC	2 cut(s)	49, 171
DraI	TTTAAA	1 cut(s)	7
Eco31I	GGTCTC	2 cut(s)	123, 146
Eco88I	CYCGRG	1 cut(s)	149
EcoNI	CCTNNNNNAGG	1 cut(s)	258
EgeI	GGCGCC	1 cut(s)	292
EheI	GGCGCC	1 cut(s)	292
Esp3I	CGTCTC	1 cut(s)	277
FaeI	CATG	1 cut(s)	125
FaiI	YATR	3 cut(s)	123, 282, 298
FatI	CATG	1 cut(s)	121
Fnu4HI	GCNGC	2 cut(s)	195, 294
Fsp4HI	GCNGC	2 cut(s)	195, 294
GlaI	GCGC	2 cut(s)	214, 292
GluI	GCNGC	2 cut(s)	195, 294
GsaI	CCCAGC	1 cut(s)	47
HaeII	RGCGCY	1 cut(s)	294
HaeIII	GGCC	1 cut(s)	253
HgaI	GACGC	2 cut(s)	134, 153
HhaI	GCGC	2 cut(s)	215, 293
Hin1I	GRCGYC	2 cut(s)	145, 291
Hin1II	CATG	1 cut(s)	125
Hin6I	GCGC	2 cut(s)	213, 291
HinP1I	GCGC	2 cut(s)	213, 291
HphI	GGTGA	1 cut(s)	44
Hpy188I	TCNGA	1 cut(s)	136
Hpy188III	TCNNGA	2 cut(s)	122, 151
Hpy99I	CGWCG	2 cut(s)	147, 290
HpyCH4IV	ACGT	2 cut(s)	99, 234
HpyCH4V	TGCA	2 cut(s)	28, 257
HpyF10VI	GCNNNNNNNGC	4 cut(s)	203, 212, 254, 275
HpyF3I	CTNAG	1 cut(s)	274
HpySE526I	ACGT	2 cut(s)	99, 234
Hsp92I	GRCGYC	2 cut(s)	145, 291
Hsp92II	CATG	1 cut(s)	125
HspAI	GCGC	2 cut(s)	213, 291
KasI	GGCGCC	1 cut(s)	290
Kzo9I	GATC	2 cut(s)	49, 171
LpnPI	CCDG	5 cut(s)	29, 53, 123, 182, 267
Lsp1109I	GCAGC	1 cut(s)	181
LweI	GCATC	1 cut(s)	235
MaeII	ACGT	2 cut(s)	99, 234
MalI	GATC	2 cut(s)	51, 173
MboI	GATC	2 cut(s)	49, 171
MboII	GAAGA	1 cut(s)	53
MluCI	AATT	2 cut(s)	29, 56
Mly113I	GGCGCC	1 cut(s)	291
MnlI	CCTC	2 cut(s)	150, 158
MseI	TTAA	1 cut(s)	6
Mva1269I	GAATGC	1 cut(s)	208
MvnI	CGCG	1 cut(s)	213
MwoI	GCNNNNNNNGC	4 cut(s)	203, 212, 254, 275
NarI	GGCGCC	1 cut(s)	291
NdeII	GATC	2 cut(s)	49, 171
NlaIII	CATG	1 cut(s)	125
NlaIV	GGNNCC	1 cut(s)	292
PaeR7I	CTCGAG	1 cut(s)	149
PagI	TCATGA	1 cut(s)	121
PcsI	WCGNNNNNNNCGW	2 cut(s)	156, 240
PctI	GAATGC	1 cut(s)	208
Pfl23II	CGTACG	1 cut(s)	235
PkrI	GCNGC	2 cut(s)	196, 295
PluTI	GGCGCC	1 cut(s)	294
PspFI	CCCAGC	1 cut(s)	43
PspLI	CGTACG	1 cut(s)	235
PspN4I	GGNNCC	1 cut(s)	292
RsaI	GTAC	3 cut(s)	98, 237, 266
RsaNI	GTAC	3 cut(s)	97, 236, 265
SaqAI	TTAA	1 cut(s)	6
SatI	GCNGC	2 cut(s)	195, 294
Sau3AI	GATC	2 cut(s)	49, 171
SetI	ASST	5 cut(s)	20, 42, 102, 142, 237
SfaNI	GCATC	1 cut(s)	235
SfoI	GGCGCC	1 cut(s)	292
Sfr274I	CTCGAG	1 cut(s)	149
SlaI	CTCGAG	1 cut(s)	149
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
Sse9I	AATT	2 cut(s)	29, 56
SsiI	CCGC	1 cut(s)	294
SspDI	GGCGCC	1 cut(s)	290
TaiI	ACGT	2 cut(s)	102, 237
TaqI	TCGA	2 cut(s)	142, 150
TasI	AATT	2 cut(s)	29, 56
TauI	GCSGC	1 cut(s)	296
Tru1I	TTAA	1 cut(s)	6
Tru9I	TTAA	1 cut(s)	6
TseI	GCWGC	1 cut(s)	194
XagI	CCTNNNNNAGG	1 cut(s)	258
XhoI	CTCGAG	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.