Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000870

Physical Location & Seq

Genomic Coordinates Forward (+)

26385422 .. 26387834

Gene Structure 2413 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG259000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGGGGATTTTTTATCAGAAGGACTCACCCTGTTCTCTCCTTACAAGATGGGCAGGCTCAATCTCTCTCACAGGGTGGTGCTTGCGCCATTGACAAGGTGTCGAGCTCCTAACGAAATTCCACAGCCAGCGATGATCGAGTATTATTCTCAGAGGTCAACCCCCGGCGGCCTTCTTATTACTGAAGCCACTTCGCTCTCCGACACGAGTGCTGGGTTTCCACGTGTTCCTGGGATTTACACAGATGAACAGGTTAAGAAATGGACGAAAGTGGTCGACGCTGTTCACGCCAAAGGTGGCATTATTTTCTGTCAACTTTTGCATGTAGGTCGTGCTTCTCATCAAGTTTACCAACCTAGTGGGAGTTCGCCAATTTCTTCAACCAACAATCCCATTTCAAGTAGATGGAAAATTCTGTTGCCAGATGGGTCTCAAGAGACTTATGCTCAGCCTCGACGCCTCGAAACCCATGAAATACCTCAGATTGTTGAGCAGTATCGCCACGCTGCCTTAAATGCTATTCGAGCAGGTCAGTTTTGTATTCCTCTCATAATTGGTTCATTTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009605 GO:0009607 GO:0009620 GO:0009694 GO:0009695 GO:0009791 GO:0009908 GO:0009987 GO:0010035 GO:0010193 GO:0010817 GO:0016053 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0019752 GO:0022414 GO:0031407 GO:0031408 GO:0032501 GO:0032502 GO:0032787 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042579 GO:0042802 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046677 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0055114 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0090567 GO:0099402 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

189

Amino Acids

20.87

Weight (kDa)

9.07

Isoelectric Point (pI)

46.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_FMN	PF00724	11 - 177	3.2e-35	NADH:flavin oxidoreductase / NADH oxidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06050 AT2G06050 AT2G06050
fragaria_vesca	FvH4_1g08451 FvH4_1g08452 FvH4_1g08453 FvH4_1g08454 FvH4_1g08510 FvH4_1g08510 FvH4_1g08510 FvH4_1g08510
malus_domestica	MD00G1142600.v1.1 MD02G1089100.v1.1 MD12G1067300.v1.1 MD15G1216200.v1.1
prunus_persica	Prupe.7G200800_v2.0.a1
pyrus_communis	pycom02g07130 pycom15g19180
rosa_chinensis	RchiOBHm_Chr2g0094561 RchiOBHm_Chr2g0094611 RchiOBHm_Chr2g0094631 RchiOBHm_Chr2g0094641 RchiOBHm_Chr2g0150041 RchiOBHm_Chr7g0211621 RchiOBHm_Chr7g0230281
rosa_laevigata	RLG00000002990 RLG00000016504 RLG00000016506 RLG00000016507 RLG00000020462
rosa_multiflora	Rmu_co8133296.1_g000001 Rmu_co8390375.1_g000001 Rmu_sc0003760.1_g000017 Rmu_sc0004232.1_g000012 Rmu_sc0004359.1_g000033 Rmu_sc0004359.1_g000036 Rmu_sc0006422.1_g000001 Rmu_sc0009445.1_g000018 Rmu_sc0017068.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097490 Rroxscaffold_2G00147030 Rroxscaffold_2G00147040 Rroxscaffold_2G00147050 Rroxscaffold_3G00247670
rosa_rugosa	Rorug02G0045400 Rorug02G0045400 Rorug02G0045600 Rorug02G0045700 Rorug02G0418000 Rorug07G0126300
rosa_samantha	Rh2AG093100 Rh2BG093400 Rh2BG093700 Rh2BG489500 Rh2CG095800 Rh2CG096000 Rh2DG092200 Rh2DG092400 Rh7AG259000 Rh7BG253300 Rh7CG276100 Rh7DG266600
rosa_wichuraiana	Rw0G003550 Rw0G003560 Rw2G038940 Rw7G022140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	518
AccI	GTMKAC	1 cut(s)	276
AciI	CCGC	1 cut(s)	168
AcsI	RAATTY	2 cut(s)	117, 411
AcuI	CTGAAG	1 cut(s)	204
AcvI	CACGTG	1 cut(s)	224
AcyI	GRCGYC	1 cut(s)	457
AdeI	CACNNNGTG	1 cut(s)	76
AflIII	ACRYGT	1 cut(s)	223
AgsI	TTSAA	2 cut(s)	381, 399
AhdI	GACNNNNNGTC	1 cut(s)	99
AjnI	CCWGG	1 cut(s)	229
AluBI	AGCT	1 cut(s)	107
AluI	AGCT	1 cut(s)	107
Alw21I	GWGCWC	1 cut(s)	109
Alw26I	GTCTC	2 cut(s)	431, 435
AoxI	GGCC	1 cut(s)	169
ApeKI	GCWGC	1 cut(s)	506
ApoI	RAATTY	2 cut(s)	117, 411
AspLEI	GCGC	1 cut(s)	88
AsuC2I	CCSGG	1 cut(s)	165
AsuHPI	GGTGA	1 cut(s)	19
BanII	GRGCYC	1 cut(s)	109
BauI	CACGAG	1 cut(s)	205
BbrPI	CACGTG	1 cut(s)	224
Bbv12I	GWGCWC	1 cut(s)	109
BbvI	GCAGC	1 cut(s)	493
BccI	CCATC	3 cut(s)	43, 399, 419
BcgI	CGANNNNNNTGC	4 cut(s)	191, 225, 311, 345
BciT130I	CCWGG	1 cut(s)	231
BcnI	CCSGG	1 cut(s)	165
BcoDI	GTCTC	2 cut(s)	431, 435
BfaI	CTAG	1 cut(s)	357
BfuAI	ACCTGC	1 cut(s)	518
BisI	GCNGC	2 cut(s)	169, 507
BlpI	GCTNAGC	1 cut(s)	447
BlsI	GCNGC	2 cut(s)	170, 508
Bme1390I	CCNGG	2 cut(s)	165, 231
BmeRI	GACNNNNNGTC	1 cut(s)	99
BmrFI	CCNGG	2 cut(s)	165, 231
Bpu1102I	GCTNAGC	1 cut(s)	447
BpuEI	CTTGAG	1 cut(s)	417
BpuMI	CCSGG	1 cut(s)	165
BsaAI	YACGTR	1 cut(s)	224
BsaHI	GRCGYC	1 cut(s)	457
BsaI	GGTCTC	1 cut(s)	435
BsaJI	CCNNGG	2 cut(s)	163, 230
BseBI	CCWGG	1 cut(s)	231
BseDI	CCNNGG	2 cut(s)	163, 230
BseMII	CTCAG	3 cut(s)	164, 461, 494
BseXI	GCAGC	1 cut(s)	493
BseYI	CCCAGC	1 cut(s)	212
BshFI	GGCC	1 cut(s)	171
BsiHKAI	GWGCWC	1 cut(s)	109
BsiSI	CCGG	1 cut(s)	165
BsmAI	GTCTC	2 cut(s)	431, 435
BsnI	GGCC	1 cut(s)	171
Bso31I	GGTCTC	1 cut(s)	435
Bsp1286I	GDGCHC	1 cut(s)	109
Bsp143I	GATC	1 cut(s)	135
Bsp1720I	GCTNAGC	1 cut(s)	447
BspACI	CCGC	1 cut(s)	168
BspANI	GGCC	1 cut(s)	171
BspCNI	CTCAG	3 cut(s)	163, 460, 493
BspMI	ACCTGC	1 cut(s)	518
BspTNI	GGTCTC	1 cut(s)	435
BssECI	CCNNGG	2 cut(s)	163, 230
BssMI	GATC	1 cut(s)	135
BssNI	GRCGYC	1 cut(s)	457
BssSI	CACGAG	1 cut(s)	205
Bst2BI	CACGAG	1 cut(s)	205
Bst2UI	CCWGG	1 cut(s)	231
BstACI	GRCGYC	1 cut(s)	457
BstBAI	YACGTR	1 cut(s)	224
BstC8I	GCNNGC	3 cut(s)	56, 84, 129
BstDEI	CTNAG	3 cut(s)	150, 447, 480
BstHHI	GCGC	1 cut(s)	88
BstKTI	GATC	1 cut(s)	138
BstMAI	GTCTC	2 cut(s)	431, 435
BstMBI	GATC	1 cut(s)	135
BstMWI	GCNNNNNNNGC	3 cut(s)	287, 515, 524
BstNI	CCWGG	1 cut(s)	231
BstNSI	RCATGY	1 cut(s)	326
BstSCI	CCNGG	2 cut(s)	163, 229
BstV1I	GCAGC	1 cut(s)	493
BstXI	CCANNNNNNTGG	1 cut(s)	359
BsuRI	GGCC	1 cut(s)	171
BtgZI	GCGATG	1 cut(s)	146
BveI	ACCTGC	1 cut(s)	518
Cac8I	GCNNGC	3 cut(s)	56, 84, 129
CfoI	GCGC	1 cut(s)	88
CseI	GACGC	2 cut(s)	287, 465
CviAII	CATG	2 cut(s)	323, 470
CviJI	RGCY	6 cut(s)	58, 107, 127, 171, 188, 451
CviKI_1	RGCY	6 cut(s)	58, 107, 127, 171, 188, 451
DdeI	CTNAG	3 cut(s)	150, 447, 480
DpnI	GATC	1 cut(s)	137
DpnII	GATC	1 cut(s)	135
DraIII	CACNNNGTG	1 cut(s)	76
DriI	GACNNNNNGTC	1 cut(s)	99
Eam1105I	GACNNNNNGTC	1 cut(s)	99
Ecl136II	GAGCTC	1 cut(s)	107
Eco24I	GRGCYC	1 cut(s)	109
Eco31I	GGTCTC	1 cut(s)	435
Eco53kI	GAGCTC	1 cut(s)	107
Eco57I	CTGAAG	1 cut(s)	204
Eco72I	CACGTG	1 cut(s)	224
EcoICRI	GAGCTC	1 cut(s)	107
EcoRII	CCWGG	1 cut(s)	229
EcoT38I	GRGCYC	1 cut(s)	109
FaeI	CATG	2 cut(s)	326, 473
FaiI	YATR	5 cut(s)	324, 444, 471, 551, 568
FatI	CATG	2 cut(s)	322, 469
FblI	GTMKAC	1 cut(s)	276
Fnu4HI	GCNGC	2 cut(s)	169, 507
FriOI	GRGCYC	1 cut(s)	109
Fsp4HI	GCNGC	2 cut(s)	169, 507
FspBI	CTAG	1 cut(s)	357
GlaI	GCGC	1 cut(s)	87
GluI	GCNGC	2 cut(s)	169, 507
GsaI	CCCAGC	1 cut(s)	216
HaeIII	GGCC	1 cut(s)	171
HapII	CCGG	1 cut(s)	165
HgaI	GACGC	2 cut(s)	287, 465
HhaI	GCGC	1 cut(s)	88
Hin1I	GRCGYC	1 cut(s)	457
Hin1II	CATG	2 cut(s)	326, 473
Hin6I	GCGC	1 cut(s)	86
HinP1I	GCGC	1 cut(s)	86
HincII	GTYRAC	3 cut(s)	159, 277, 314
HindII	GTYRAC	3 cut(s)	159, 277, 314
HinfI	GANTC	1 cut(s)	24
HpaII	CCGG	1 cut(s)	165
HphI	GGTGA	1 cut(s)	19
Hpy166II	GTNNAC	5 cut(s)	159, 277, 286, 314, 349
Hpy188I	TCNGA	4 cut(s)	19, 153, 202, 483
Hpy188III	TCNNGA	1 cut(s)	434
Hpy8I	GTNNAC	5 cut(s)	159, 277, 286, 314, 349
Hpy99I	CGWCG	2 cut(s)	281, 459
HpyAV	CCTTC	2 cut(s)	14, 182
HpyCH4IV	ACGT	1 cut(s)	223
HpyCH4V	TGCA	1 cut(s)	322
HpyF10VI	GCNNNNNNNGC	3 cut(s)	287, 515, 524
HpyF3I	CTNAG	3 cut(s)	150, 447, 480
HpySE526I	ACGT	1 cut(s)	223
Hsp92I	GRCGYC	1 cut(s)	457
Hsp92II	CATG	2 cut(s)	326, 473
HspAI	GCGC	1 cut(s)	86
Kzo9I	GATC	1 cut(s)	135
LmnI	GCTCC	1 cut(s)	112
Lsp1109I	GCAGC	1 cut(s)	493
MaeI	CTAG	1 cut(s)	357
MaeII	ACGT	1 cut(s)	223
MalI	GATC	1 cut(s)	137
MboI	GATC	1 cut(s)	135
MboII	GAAGA	1 cut(s)	369
MhlI	GDGCHC	1 cut(s)	109
MluCI	AATT	4 cut(s)	117, 372, 411, 552
MlyI	GAGTC	1 cut(s)	18
MmeI	TCCRAC	1 cut(s)	225
MnlI	CCTC	5 cut(s)	147, 462, 470, 489, 555
MseI	TTAA	2 cut(s)	255, 512
MspI	CCGG	1 cut(s)	165
MspR9I	CCNGG	2 cut(s)	165, 231
MvaI	CCWGG	1 cut(s)	231
MwoI	GCNNNNNNNGC	3 cut(s)	287, 515, 524
NciI	CCSGG	1 cut(s)	165
NdeII	GATC	1 cut(s)	135
NlaIII	CATG	2 cut(s)	326, 473
NspI	RCATGY	1 cut(s)	326
PkrI	GCNGC	2 cut(s)	170, 508
PleI	GAGTC	1 cut(s)	18
PmaCI	CACGTG	1 cut(s)	224
PmlI	CACGTG	1 cut(s)	224
PpsI	GAGTC	1 cut(s)	18
Ppu21I	YACGTR	1 cut(s)	224
Psp124BI	GAGCTC	1 cut(s)	109
Psp6I	CCWGG	1 cut(s)	229
PspCI	CACGTG	1 cut(s)	224
PspFI	CCCAGC	1 cut(s)	212
PspGI	CCWGG	1 cut(s)	229
SacI	GAGCTC	1 cut(s)	109
SalI	GTCGAC	1 cut(s)	275
SaqAI	TTAA	2 cut(s)	255, 512
SatI	GCNGC	2 cut(s)	169, 507
Sau3AI	GATC	1 cut(s)	135
SchI	GAGTC	1 cut(s)	18
ScrFI	CCNGG	2 cut(s)	165, 231
SduI	GDGCHC	1 cut(s)	109
SmlI	CTYRAG	1 cut(s)	432
SmoI	CTYRAG	1 cut(s)	432
Sse9I	AATT	4 cut(s)	117, 372, 411, 552
SsiI	CCGC	1 cut(s)	168
SspMI	CTAG	1 cut(s)	357
SstI	GAGCTC	1 cut(s)	109
StyD4I	CCNGG	2 cut(s)	163, 229
TaiI	ACGT	1 cut(s)	226
TaqI	TCGA	6 cut(s)	103, 138, 276, 454, 462, 523
TasI	AATT	4 cut(s)	117, 372, 411, 552
TauI	GCSGC	1 cut(s)	171
Tru1I	TTAA	2 cut(s)	255, 512
Tru9I	TTAA	2 cut(s)	255, 512
TseI	GCWGC	1 cut(s)	506
TspDTI	ATGAA	3 cut(s)	261, 486, 549
XapI	RAATTY	2 cut(s)	117, 411
XceI	RCATGY	1 cut(s)	326
XmiI	GTMKAC	1 cut(s)	276
XspI	CTAG	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.