Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000870

Physical Location & Seq

Genomic Coordinates Reverse (-)

41050512 .. 41052957

Gene Structure 2446 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00247670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGGGGGATTTTTCATCAGAAGGACTCACCCTGTTCTCTCCTTACAAGATGGGCAGGCTCAATCTCTCTCACAGGGTGGTGCTTGCGCCATTGACAAGGTGCCGAGCTCCTAACGAAATTCCACAGCCAGCGATGATCGAGTATTATTCTCAGAGGTCAACCACCGGAGGCCTTCTTATCACTGAAGCCACTACGCTCTCCGACATGGGTGCTGGGTTTCCACGTGTTCCTGGGATTTACACAGATGAACAGGTTAAGAAATGGAAGAAGGTGGTCGACGCTGTTCACGCCAAAGGTGCCATTATTTTCTGTCAACTTTTGCATGTAGGTCGTGCTTCTCATCAAGTTTACCAACCTAGTGGGGGTTCGTCGATTTCTTCAACCAACAATCCCATTTCAAATAGATGGAAAATTCTGTTGCCAGATGGGTCTGAAGAGACTTATGCTCAGCCTCGACGCCTCGAAACTCATGAAATACCTCAGATTGTTGAGCAGTATCGCCACGCTGCCTTAAATGCTATTCGAGCAGGTTTTGATGGAATTGAGATCCATGCGGCACACGGCTACCTCATTGATCAATTCCTAAAAGATGGGATCAACGATCGAACTGATGAATATGGTGGGTCGCTTGCAAACCGTTGCAAATTCTTGATTCAGATTGTTCAAGCAGTAGTTGAAGCCATTGGTGCTAATAGAGTTGCTGTCAGAATCTCACCAGCTATTGATTTCAATGATGCTACGGACTCCGACCCGATTGGTCTAGGCCTTGCAGTGATTGACAAGCTCAATCAGCTTCAATACAACGTAGGCTCAAAGCTCGCTTATCTCCATGTAACTCAGCCTCGTTTCTTTGTTCAATACAACGGAGGCTTGGCCGAGTCTGATCAAGACACAGATGCTCAATTCATGAGGACTTTGCGACAAGCTTATCAAGGTACATTCATGGCTAGTGGAGGGTTTACGAGAGAACTAGGAATGGAAATTGTGGCTTCCGGTGATGCTGATTTAGTGTCATATGGCCGGAATTTTATCTCAAACCCTGACTTGGTGTTGAGGTTTAAGCTGAATGCTCCCTTGAACAAGTATATTAGGGAGACTTTCTACACCGATGACCCAGTAGTTGGGTACACAGACTACCCTTTTCTGGACAAAGAAAGTGTGAAAGAGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009605 GO:0009607 GO:0009620 GO:0009694 GO:0009695 GO:0009791 GO:0009908 GO:0009987 GO:0010035 GO:0010193 GO:0010817 GO:0016053 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0019752 GO:0022414 GO:0031407 GO:0031408 GO:0032501 GO:0032502 GO:0032787 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042579 GO:0042802 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046677 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0055114 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0090567 GO:0099402 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

390

Amino Acids

43.27

Weight (kDa)

5.76

Isoelectric Point (pI)

32.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_FMN	PF00724	11 - 359	1.7e-84	NADH:flavin oxidoreductase / NADH oxidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06050 AT2G06050 AT2G06050
fragaria_vesca	FvH4_1g08451 FvH4_1g08452 FvH4_1g08453 FvH4_1g08454 FvH4_1g08510 FvH4_1g08510 FvH4_1g08510 FvH4_1g08510
malus_domestica	MD00G1142600.v1.1 MD02G1089100.v1.1 MD12G1067300.v1.1 MD15G1216200.v1.1
prunus_persica	Prupe.7G200800_v2.0.a1
pyrus_communis	pycom02g07130 pycom15g19180
rosa_chinensis	RchiOBHm_Chr2g0094561 RchiOBHm_Chr2g0094611 RchiOBHm_Chr2g0094631 RchiOBHm_Chr2g0094641 RchiOBHm_Chr2g0150041 RchiOBHm_Chr7g0211621 RchiOBHm_Chr7g0230281
rosa_laevigata	RLG00000002990 RLG00000016504 RLG00000016506 RLG00000016507 RLG00000020462
rosa_multiflora	Rmu_co8133296.1_g000001 Rmu_co8390375.1_g000001 Rmu_sc0003760.1_g000017 Rmu_sc0004232.1_g000012 Rmu_sc0004359.1_g000033 Rmu_sc0004359.1_g000036 Rmu_sc0006422.1_g000001 Rmu_sc0009445.1_g000018 Rmu_sc0017068.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097490 Rroxscaffold_2G00147030 Rroxscaffold_2G00147040 Rroxscaffold_2G00147050 Rroxscaffold_3G00247670
rosa_rugosa	Rorug02G0045400 Rorug02G0045400 Rorug02G0045600 Rorug02G0045700 Rorug02G0418000 Rorug07G0126300
rosa_samantha	Rh2AG093100 Rh2BG093400 Rh2BG093700 Rh2BG489500 Rh2CG095800 Rh2CG096000 Rh2DG092200 Rh2DG092400 Rh7AG259000 Rh7BG253300 Rh7CG276100 Rh7DG266600
rosa_wichuraiana	Rw0G003550 Rw0G003560 Rw2G038940 Rw7G022140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	518
AccB1I	GGYRCC	2 cut(s)	99, 296
AccB7I	CCANNNNNTGG	1 cut(s)	1121
AccI	GTMKAC	1 cut(s)	276
AciI	CCGC	1 cut(s)	554
AclWI	GGATC	2 cut(s)	541, 602
AcoI	YGGCCR	2 cut(s)	873, 1018
AcsI	RAATTY	4 cut(s)	117, 411, 644, 1024
AcuI	CTGAAG	2 cut(s)	204, 453
AcvI	CACGTG	1 cut(s)	224
AcyI	GRCGYC	1 cut(s)	457
AdeI	CACNNNGTG	1 cut(s)	76
AfaI	GTAC	2 cut(s)	937, 1127
AfiI	CCNNNNNNNGG	4 cut(s)	362, 1045, 1121, 1144
AflIII	ACRYGT	1 cut(s)	223
AgsI	TTSAA	8 cut(s)	381, 399, 665, 677, 730, 797, 857, 1078
AjnI	CCWGG	1 cut(s)	229
AluBI	AGCT	7 cut(s)	107, 719, 784, 793, 817, 926, 1063
AluI	AGCT	7 cut(s)	107, 719, 784, 793, 817, 926, 1063
Alw21I	GWGCWC	1 cut(s)	109
Alw26I	GTCTC	2 cut(s)	431, 1088
AlwI	GGATC	2 cut(s)	541, 602
AoxI	GGCC	4 cut(s)	169, 763, 873, 1018
ApeKI	GCWGC	1 cut(s)	506
ApoI	RAATTY	4 cut(s)	117, 411, 644, 1024
AspLEI	GCGC	1 cut(s)	88
AsuHPI	GGTGA	3 cut(s)	19, 705, 1007
BanI	GGYRCC	2 cut(s)	99, 296
BanII	GRGCYC	1 cut(s)	109
BbrPI	CACGTG	1 cut(s)	224
Bbv12I	GWGCWC	1 cut(s)	109
BbvI	GCAGC	1 cut(s)	493
BccI	CCATC	5 cut(s)	43, 399, 419, 530, 584
BceAI	ACGGC	1 cut(s)	577
BcgI	CGANNNNNNTGC	4 cut(s)	191, 225, 311, 345
BciT130I	CCWGG	1 cut(s)	231
BclI	TGATCA	2 cut(s)	574, 883
BcoDI	GTCTC	2 cut(s)	431, 1088
BfaI	CTAG	4 cut(s)	357, 761, 948, 971
BfuAI	ACCTGC	1 cut(s)	518
BisI	GCNGC	2 cut(s)	507, 555
BlpI	GCTNAGC	1 cut(s)	447
BlsI	GCNGC	2 cut(s)	508, 556
Bme1390I	CCNGG	1 cut(s)	231
BmiI	GGNNCC	2 cut(s)	101, 298
BmrFI	CCNGG	1 cut(s)	231
BmrI	ACTGGG	1 cut(s)	1109
BmsI	GCATC	3 cut(s)	724, 886, 988
BmuI	ACTGGG	1 cut(s)	1109
Bpu1102I	GCTNAGC	1 cut(s)	447
BsaAI	YACGTR	1 cut(s)	224
BsaHI	GRCGYC	1 cut(s)	457
BsaJI	CCNNGG	1 cut(s)	230
BsaWI	WCCGGW	2 cut(s)	164, 992
Bsc4I	CCNNNNNNNGG	4 cut(s)	362, 1045, 1121, 1144
Bse1I	ACTGG	1 cut(s)	1115
BseBI	CCWGG	1 cut(s)	231
BseDI	CCNNGG	1 cut(s)	230
BseLI	CCNNNNNNNGG	4 cut(s)	362, 1045, 1121, 1144
BseMII	CTCAG	4 cut(s)	164, 461, 494, 851
BseNI	ACTGG	1 cut(s)	1115
BseXI	GCAGC	1 cut(s)	493
BseYI	CCCAGC	1 cut(s)	212
Bsh1285I	CGRYCG	1 cut(s)	604
BshFI	GGCC	4 cut(s)	171, 765, 875, 1020
BshNI	GGYRCC	2 cut(s)	99, 296
BsiEI	CGRYCG	1 cut(s)	604
BsiHKAI	GWGCWC	1 cut(s)	109
BsiSI	CCGG	3 cut(s)	165, 993, 1021
BslI	CCNNNNNNNGG	4 cut(s)	362, 1045, 1121, 1144
BsmAI	GTCTC	2 cut(s)	431, 1088
BsmI	GAATGC	1 cut(s)	1072
BsnI	GGCC	4 cut(s)	171, 765, 875, 1020
Bsp1286I	GDGCHC	1 cut(s)	109
Bsp143I	GATC	6 cut(s)	135, 546, 574, 594, 601, 883
Bsp1720I	GCTNAGC	1 cut(s)	447
BspACI	CCGC	1 cut(s)	554
BspANI	GGCC	4 cut(s)	171, 765, 875, 1020
BspCNI	CTCAG	4 cut(s)	163, 460, 493, 850
BspHI	TCATGA	2 cut(s)	469, 906
BspLI	GGNNCC	2 cut(s)	101, 298
BspMI	ACCTGC	1 cut(s)	518
BspPI	GGATC	2 cut(s)	541, 602
BspT107I	GGYRCC	2 cut(s)	99, 296
BsrI	ACTGG	1 cut(s)	1115
BssECI	CCNNGG	1 cut(s)	230
BssMI	GATC	6 cut(s)	135, 546, 574, 594, 601, 883
BssNI	GRCGYC	1 cut(s)	457
Bst2UI	CCWGG	1 cut(s)	231
Bst4CI	ACNGT	1 cut(s)	638
Bst6I	CTCTTC	1 cut(s)	429
BstACI	GRCGYC	1 cut(s)	457
BstBAI	YACGTR	1 cut(s)	224
BstC8I	GCNNGC	5 cut(s)	56, 84, 129, 630, 819
BstDEI	CTNAG	4 cut(s)	150, 447, 480, 837
BstHHI	GCGC	1 cut(s)	88
BstKTI	GATC	6 cut(s)	138, 549, 577, 597, 604, 886
BstMAI	GTCTC	2 cut(s)	431, 1088
BstMBI	GATC	6 cut(s)	135, 546, 574, 594, 601, 883
BstMCI	CGRYCG	1 cut(s)	604
BstMWI	GCNNNNNNNGC	6 cut(s)	287, 296, 515, 524, 686, 790
BstNI	CCWGG	1 cut(s)	231
BstNSI	RCATGY	1 cut(s)	326
BstSCI	CCNGG	1 cut(s)	229
BstV1I	GCAGC	1 cut(s)	493
BstX2I	RGATCY	1 cut(s)	546
BstXI	CCANNNNNNTGG	1 cut(s)	359
BstYI	RGATCY	1 cut(s)	546
BsuRI	GGCC	4 cut(s)	171, 765, 875, 1020
BtgZI	GCGATG	1 cut(s)	146
BtsI	GCAGTG	1 cut(s)	777
BtsIMutI	CAGTG	2 cut(s)	180, 777
BveI	ACCTGC	1 cut(s)	518
Cac8I	GCNNGC	5 cut(s)	56, 84, 129, 630, 819
CciI	TCATGA	2 cut(s)	469, 906
CfoI	GCGC	1 cut(s)	88
CseI	GACGC	2 cut(s)	287, 465
Csp6I	GTAC	2 cut(s)	936, 1126
CviAII	CATG	7 cut(s)	205, 323, 470, 551, 830, 907, 943
CviQI	GTAC	2 cut(s)	936, 1126
DdeI	CTNAG	4 cut(s)	150, 447, 480, 837
DpnI	GATC	6 cut(s)	137, 548, 576, 596, 603, 885
DpnII	GATC	6 cut(s)	135, 546, 574, 594, 601, 883
DraIII	CACNNNGTG	1 cut(s)	76
EaeI	YGGCCR	2 cut(s)	873, 1018
Eam1104I	CTCTTC	1 cut(s)	429
EarI	CTCTTC	1 cut(s)	429
Ecl136II	GAGCTC	1 cut(s)	107
Eco147I	AGGCCT	2 cut(s)	171, 765
Eco24I	GRGCYC	1 cut(s)	109
Eco53kI	GAGCTC	1 cut(s)	107
Eco57I	CTGAAG	2 cut(s)	204, 453
Eco72I	CACGTG	1 cut(s)	224
EcoICRI	GAGCTC	1 cut(s)	107
EcoRII	CCWGG	1 cut(s)	229
EcoT38I	GRGCYC	1 cut(s)	109
FaeI	CATG	7 cut(s)	208, 326, 473, 554, 833, 910, 946
FatI	CATG	7 cut(s)	204, 322, 469, 550, 829, 906, 942
FauNDI	CATATG	1 cut(s)	1015
FbaI	TGATCA	2 cut(s)	574, 883
FblI	GTMKAC	1 cut(s)	276
Fnu4HI	GCNGC	2 cut(s)	507, 555
FriOI	GRGCYC	1 cut(s)	109
Fsp4HI	GCNGC	2 cut(s)	507, 555
FspBI	CTAG	4 cut(s)	357, 761, 948, 971
GlaI	GCGC	1 cut(s)	87
GluI	GCNGC	2 cut(s)	507, 555
GsaI	CCCAGC	1 cut(s)	216
HaeIII	GGCC	4 cut(s)	171, 765, 875, 1020
HapII	CCGG	3 cut(s)	165, 993, 1021
HgaI	GACGC	2 cut(s)	287, 465
HhaI	GCGC	1 cut(s)	88
Hin1I	GRCGYC	1 cut(s)	457
Hin1II	CATG	7 cut(s)	208, 326, 473, 554, 833, 910, 946
Hin6I	GCGC	1 cut(s)	86
HinP1I	GCGC	1 cut(s)	86
HincII	GTYRAC	3 cut(s)	159, 277, 314
HindII	GTYRAC	3 cut(s)	159, 277, 314
HindIII	AAGCTT	1 cut(s)	924
HinfI	GANTC	5 cut(s)	24, 652, 708, 743, 878
HpaII	CCGG	3 cut(s)	165, 993, 1021
HphI	GGTGA	3 cut(s)	19, 705, 1007
Hpy166II	GTNNAC	7 cut(s)	159, 277, 286, 314, 349, 960, 1128
Hpy188I	TCNGA	9 cut(s)	19, 153, 202, 433, 483, 657, 707, 748, 883
Hpy188III	TCNNGA	5 cut(s)	470, 649, 887, 907, 1145
Hpy8I	GTNNAC	7 cut(s)	159, 277, 286, 314, 349, 960, 1128
Hpy99I	CGWCG	3 cut(s)	281, 373, 459
HpyAV	CCTTC	3 cut(s)	14, 182, 262
HpyCH4III	ACNGT	1 cut(s)	638
HpyCH4IV	ACGT	2 cut(s)	223, 804
HpyCH4V	TGCA	4 cut(s)	322, 632, 642, 770
HpyF10VI	GCNNNNNNNGC	6 cut(s)	287, 296, 515, 524, 686, 790
HpyF3I	CTNAG	4 cut(s)	150, 447, 480, 837
HpySE526I	ACGT	2 cut(s)	223, 804
Hsp92I	GRCGYC	1 cut(s)	457
Hsp92II	CATG	7 cut(s)	208, 326, 473, 554, 833, 910, 946
HspAI	GCGC	1 cut(s)	86
Ksp22I	TGATCA	2 cut(s)	574, 883
Kzo9I	GATC	6 cut(s)	135, 546, 574, 594, 601, 883
LmnI	GCTCC	2 cut(s)	112, 1075
Lsp1109I	GCAGC	1 cut(s)	493
LweI	GCATC	3 cut(s)	724, 886, 988
MaeI	CTAG	4 cut(s)	357, 761, 948, 971
MaeII	ACGT	2 cut(s)	223, 804
MaeIII	GTNAC	1 cut(s)	832
MalI	GATC	6 cut(s)	137, 548, 576, 596, 603, 885
MboI	GATC	6 cut(s)	135, 546, 574, 594, 601, 883
MboII	GAAGA	3 cut(s)	277, 369, 446
MflI	RGATCY	1 cut(s)	546
MhlI	GDGCHC	1 cut(s)	109
MluCI	AATT	8 cut(s)	117, 411, 540, 578, 644, 902, 981, 1024
MlyI	GAGTC	3 cut(s)	18, 737, 887
MmeI	TCCRAC	2 cut(s)	225, 771
MseI	TTAA	3 cut(s)	255, 512, 1059
MspI	CCGG	3 cut(s)	165, 993, 1021
MspR9I	CCNGG	1 cut(s)	231
Mva1269I	GAATGC	1 cut(s)	1072
MvaI	CCWGG	1 cut(s)	231
MwoI	GCNNNNNNNGC	6 cut(s)	287, 296, 515, 524, 686, 790
NdeI	CATATG	1 cut(s)	1015
NdeII	GATC	6 cut(s)	135, 546, 574, 594, 601, 883
NlaIII	CATG	7 cut(s)	208, 326, 473, 554, 833, 910, 946
NlaIV	GGNNCC	2 cut(s)	101, 298
NmeAIII	GCCGAG	2 cut(s)	128, 901
NspI	RCATGY	1 cut(s)	326
PagI	TCATGA	2 cut(s)	469, 906
PceI	AGGCCT	2 cut(s)	171, 765
PctI	GAATGC	1 cut(s)	1072
PfeI	GAWTC	2 cut(s)	652, 708
PflMI	CCANNNNNTGG	1 cut(s)	1121
PkrI	GCNGC	2 cut(s)	508, 556
Ple19I	CGATCG	1 cut(s)	604
PleI	GAGTC	3 cut(s)	18, 737, 886
PmaCI	CACGTG	1 cut(s)	224
PmlI	CACGTG	1 cut(s)	224
PpsI	GAGTC	3 cut(s)	18, 737, 886
Ppu21I	YACGTR	1 cut(s)	224
Psp124BI	GAGCTC	1 cut(s)	109
Psp6I	CCWGG	1 cut(s)	229
PspCI	CACGTG	1 cut(s)	224
PspFI	CCCAGC	1 cut(s)	212
PspGI	CCWGG	1 cut(s)	229
PspN4I	GGNNCC	2 cut(s)	101, 298
PsuI	RGATCY	1 cut(s)	546
PvuI	CGATCG	1 cut(s)	604
RsaI	GTAC	2 cut(s)	937, 1127
RsaNI	GTAC	2 cut(s)	936, 1126
SacI	GAGCTC	1 cut(s)	109
SalI	GTCGAC	1 cut(s)	275
SaqAI	TTAA	3 cut(s)	255, 512, 1059
SatI	GCNGC	2 cut(s)	507, 555
Sau3AI	GATC	6 cut(s)	135, 546, 574, 594, 601, 883
SchI	GAGTC	3 cut(s)	18, 737, 887
ScrFI	CCNGG	1 cut(s)	231
SduI	GDGCHC	1 cut(s)	109
SfaNI	GCATC	3 cut(s)	724, 886, 988
Sse9I	AATT	8 cut(s)	117, 411, 540, 578, 644, 902, 981, 1024
SseBI	AGGCCT	2 cut(s)	171, 765
SsiI	CCGC	1 cut(s)	554
SspMI	CTAG	4 cut(s)	357, 761, 948, 971
SstI	GAGCTC	1 cut(s)	109
StuI	AGGCCT	2 cut(s)	171, 765
StyD4I	CCNGG	1 cut(s)	229
TaaI	ACNGT	1 cut(s)	638
TaiI	ACGT	2 cut(s)	226, 807
TaqI	TCGA	7 cut(s)	138, 276, 371, 454, 462, 523, 604
TasI	AATT	8 cut(s)	117, 411, 540, 578, 644, 902, 981, 1024
TauI	GCSGC	1 cut(s)	557
TfiI	GAWTC	2 cut(s)	652, 708
Tru1I	TTAA	3 cut(s)	255, 512, 1059
Tru9I	TTAA	3 cut(s)	255, 512, 1059
TscAI	CASTG	2 cut(s)	187, 777
TseI	GCWGC	1 cut(s)	506
TspDTI	ATGAA	5 cut(s)	261, 486, 627, 895, 931
TspGWI	ACGGA	2 cut(s)	755, 879
TspRI	CASTG	2 cut(s)	187, 777
Van91I	CCANNNNNTGG	1 cut(s)	1121
XapI	RAATTY	4 cut(s)	117, 411, 644, 1024
XceI	RCATGY	1 cut(s)	326
XmiI	GTMKAC	1 cut(s)	276
XspI	CTAG	4 cut(s)	357, 761, 948, 971

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.