Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000870

Physical Location & Seq

Genomic Coordinates Forward (+)

7859415 .. 7882792

Gene Structure 23378 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG095800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGGCGATTCTTCATCAAAAGGACTCGCTCTGTTCTCTCCTTACAAGATGGGCAGTTGCAATCTCTCTCACAGGGTCGTGCTTGCGCCAATGACAAGGAGTCGAGCTCCGAACGAAATTCCACACCCAGCGATGATTGAGTATTATTCTCAGAGATCAACCCCCGGTGGCCTTTCTTATCACCGAAGCCACTCCGCTCTCCGACACGAGTGTTGGTTTACCAACCTGGCGGGGGCTCGCCTGTCTCTTAAACCAACAATCCCGGCCATTTCATATAGATGGAACGTTCCGTCGCCAGATGGTTCTGAGGACACTTACCCTCAGCCTCGACGCCTCGAAACCCACGAAATATCTCAGATTGTTGAGCAGTATTGCCGCGCTGCCTTAAATGCTATTCGAGCAGTTTACCAACCTGGCGGGGGTTCGCCGATTTCTTCAACCAACAATCCCATTTCAAATAGATGGAAAGTTCCGATGCCAGATGGATCTCAAGAGACTTACCCACAGCCTCGACGCCTCGAAACCCACGAAATACATCAGATTGTTGAGCACTATCGCCGCGCTGCCTTAAATGCAGTTCGAGCAGACATGTCCAAGTCCATCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009605 GO:0009607 GO:0009620 GO:0009694 GO:0009695 GO:0009791 GO:0009908 GO:0009987 GO:0010035 GO:0010193 GO:0010817 GO:0016053 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0019752 GO:0022414 GO:0031407 GO:0031408 GO:0032501 GO:0032502 GO:0032787 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042579 GO:0042802 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046677 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0055114 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0090567 GO:0099402 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

202

Amino Acids

22.69

Weight (kDa)

9.6

Isoelectric Point (pI)

73.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_FMN	PF00724	11 - 58	7.4e-08	NADH:flavin oxidoreductase / NADH oxidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06050 AT2G06050 AT2G06050
fragaria_vesca	FvH4_1g08451 FvH4_1g08452 FvH4_1g08453 FvH4_1g08454 FvH4_1g08510 FvH4_1g08510 FvH4_1g08510 FvH4_1g08510
malus_domestica	MD00G1142600.v1.1 MD02G1089100.v1.1 MD12G1067300.v1.1 MD15G1216200.v1.1
prunus_persica	Prupe.7G200800_v2.0.a1
pyrus_communis	pycom02g07130 pycom15g19180
rosa_chinensis	RchiOBHm_Chr2g0094561 RchiOBHm_Chr2g0094611 RchiOBHm_Chr2g0094631 RchiOBHm_Chr2g0094641 RchiOBHm_Chr2g0150041 RchiOBHm_Chr7g0211621 RchiOBHm_Chr7g0230281
rosa_laevigata	RLG00000002990 RLG00000016504 RLG00000016506 RLG00000016507 RLG00000020462
rosa_multiflora	Rmu_co8133296.1_g000001 Rmu_co8390375.1_g000001 Rmu_sc0003760.1_g000017 Rmu_sc0004232.1_g000012 Rmu_sc0004359.1_g000033 Rmu_sc0004359.1_g000036 Rmu_sc0006422.1_g000001 Rmu_sc0009445.1_g000018 Rmu_sc0017068.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097490 Rroxscaffold_2G00147030 Rroxscaffold_2G00147040 Rroxscaffold_2G00147050 Rroxscaffold_3G00247670
rosa_rugosa	Rorug02G0045400 Rorug02G0045400 Rorug02G0045600 Rorug02G0045700 Rorug02G0418000 Rorug07G0126300
rosa_samantha	Rh2AG093100 Rh2BG093400 Rh2BG093700 Rh2BG489500 Rh2CG095800 Rh2CG096000 Rh2DG092200 Rh2DG092400 Rh7AG259000 Rh7BG253300 Rh7CG276100 Rh7DG266600
rosa_wichuraiana	Rw0G003550 Rw0G003560 Rw2G038940 Rw7G022140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	197
AccII	CGCG	2 cut(s)	378, 561
AciI	CCGC	5 cut(s)	195, 230, 376, 417, 559
AclI	AACGTT	1 cut(s)	285
AclWI	GGATC	1 cut(s)	493
AcoI	YGGCCR	1 cut(s)	264
AcsI	RAATTY	1 cut(s)	117
AcyI	GRCGYC	2 cut(s)	331, 514
AfiI	CCNNNNNNNGG	2 cut(s)	232, 419
AflIII	ACRYGT	1 cut(s)	588
AgsI	TTSAA	2 cut(s)	438, 456
AhdI	GACNNNNNGTC	1 cut(s)	99
AjnI	CCWGG	2 cut(s)	225, 412
AluBI	AGCT	1 cut(s)	107
AluI	AGCT	1 cut(s)	107
Alw21I	GWGCWC	2 cut(s)	109, 552
Alw26I	GTCTC	2 cut(s)	249, 488
AlwI	GGATC	1 cut(s)	493
AoxI	GGCC	2 cut(s)	169, 264
ApeKI	GCWGC	2 cut(s)	380, 563
ApoI	RAATTY	1 cut(s)	117
AspLEI	GCGC	3 cut(s)	88, 380, 563
AsuC2I	CCSGG	2 cut(s)	165, 263
AsuHPI	GGTGA	1 cut(s)	173
BanII	GRGCYC	2 cut(s)	109, 238
BauI	CACGAG	1 cut(s)	206
Bbv12I	GWGCWC	2 cut(s)	109, 552
BbvCI	CCTCAGC	1 cut(s)	321
BbvI	GCAGC	2 cut(s)	367, 550
BccI	CCATC	6 cut(s)	43, 273, 293, 456, 476, 608
BciT130I	CCWGG	2 cut(s)	227, 414
BcnI	CCSGG	2 cut(s)	165, 263
BcoDI	GTCTC	2 cut(s)	249, 488
BisI	GCNGC	4 cut(s)	376, 381, 559, 564
BlsI	GCNGC	4 cut(s)	377, 382, 560, 565
Bme1390I	CCNGG	4 cut(s)	165, 227, 263, 414
BmeRI	GACNNNNNGTC	1 cut(s)	99
BmrFI	CCNGG	4 cut(s)	165, 227, 263, 414
BmsI	GCATC	1 cut(s)	465
BplI	GAGNNNNNCTC	2 cut(s)	91, 123
Bpu10I	CCTNAGC	1 cut(s)	321
BpuEI	CTTGAG	1 cut(s)	474
BpuMI	CCSGG	2 cut(s)	165, 263
BsaHI	GRCGYC	2 cut(s)	331, 514
BsaJI	CCNNGG	1 cut(s)	163
Bsc4I	CCNNNNNNNGG	2 cut(s)	232, 419
BseBI	CCWGG	2 cut(s)	227, 414
BseDI	CCNNGG	1 cut(s)	163
BseLI	CCNNNNNNNGG	2 cut(s)	232, 419
BseMII	CTCAG	4 cut(s)	164, 297, 335, 368
BseXI	GCAGC	2 cut(s)	367, 550
BseYI	CCCAGC	1 cut(s)	127
Bsh1236I	CGCG	2 cut(s)	378, 561
BshFI	GGCC	2 cut(s)	171, 266
BsiHKAI	GWGCWC	2 cut(s)	109, 552
BsiSI	CCGG	2 cut(s)	165, 263
BslI	CCNNNNNNNGG	2 cut(s)	232, 419
BsmAI	GTCTC	2 cut(s)	249, 488
BsnI	GGCC	2 cut(s)	171, 266
Bsp1286I	GDGCHC	3 cut(s)	109, 238, 552
Bsp143I	GATC	2 cut(s)	155, 485
BspACI	CCGC	5 cut(s)	195, 230, 376, 417, 559
BspANI	GGCC	2 cut(s)	171, 266
BspCNI	CTCAG	4 cut(s)	163, 298, 334, 367
BspFNI	CGCG	2 cut(s)	378, 561
BspPI	GGATC	1 cut(s)	493
BsrBI	CCGCTC	1 cut(s)	197
BssECI	CCNNGG	1 cut(s)	163
BssMI	GATC	2 cut(s)	155, 485
BssNI	GRCGYC	2 cut(s)	331, 514
BssSI	CACGAG	1 cut(s)	206
Bst2BI	CACGAG	1 cut(s)	206
Bst2UI	CCWGG	2 cut(s)	227, 414
BstACI	GRCGYC	2 cut(s)	331, 514
BstC8I	GCNNGC	2 cut(s)	84, 238
BstDEI	CTNAG	4 cut(s)	150, 306, 321, 354
BstFNI	CGCG	2 cut(s)	378, 561
BstHHI	GCGC	3 cut(s)	88, 380, 563
BstKTI	GATC	2 cut(s)	158, 488
BstMAI	GTCTC	2 cut(s)	249, 488
BstMBI	GATC	2 cut(s)	155, 485
BstMWI	GCNNNNNNNGC	4 cut(s)	389, 398, 572, 581
BstNI	CCWGG	2 cut(s)	227, 414
BstNSI	RCATGY	1 cut(s)	592
BstSCI	CCNGG	4 cut(s)	163, 225, 261, 412
BstUI	CGCG	2 cut(s)	378, 561
BstV1I	GCAGC	2 cut(s)	367, 550
BstX2I	RGATCY	1 cut(s)	485
BstYI	RGATCY	1 cut(s)	485
BsuRI	GGCC	2 cut(s)	171, 266
BtgZI	GCGATG	1 cut(s)	146
Cac8I	GCNNGC	2 cut(s)	84, 238
CfoI	GCGC	3 cut(s)	88, 380, 563
CseI	GACGC	2 cut(s)	339, 522
CviAII	CATG	1 cut(s)	589
CviJI	RGCY	7 cut(s)	107, 171, 189, 236, 266, 325, 508
CviKI_1	RGCY	7 cut(s)	107, 171, 189, 236, 266, 325, 508
DdeI	CTNAG	4 cut(s)	150, 306, 321, 354
DpnI	GATC	2 cut(s)	157, 487
DpnII	GATC	2 cut(s)	155, 485
DriI	GACNNNNNGTC	1 cut(s)	99
EaeI	YGGCCR	1 cut(s)	264
Eam1105I	GACNNNNNGTC	1 cut(s)	99
Ecl136II	GAGCTC	1 cut(s)	107
Eco24I	GRGCYC	2 cut(s)	109, 238
Eco53kI	GAGCTC	1 cut(s)	107
EcoICRI	GAGCTC	1 cut(s)	107
EcoRII	CCWGG	2 cut(s)	225, 412
EcoT38I	GRGCYC	2 cut(s)	109, 238
FaeI	CATG	1 cut(s)	592
FaiI	YATR	3 cut(s)	274, 276, 590
FatI	CATG	1 cut(s)	588
FauI	CCCGC	2 cut(s)	223, 410
Fnu4HI	GCNGC	4 cut(s)	376, 381, 559, 564
FriOI	GRGCYC	2 cut(s)	109, 238
Fsp4HI	GCNGC	4 cut(s)	376, 381, 559, 564
GlaI	GCGC	3 cut(s)	87, 379, 562
GluI	GCNGC	4 cut(s)	376, 381, 559, 564
GsaI	CCCAGC	1 cut(s)	131
HaeIII	GGCC	2 cut(s)	171, 266
HapII	CCGG	2 cut(s)	165, 263
HgaI	GACGC	2 cut(s)	339, 522
HhaI	GCGC	3 cut(s)	88, 380, 563
Hin1I	GRCGYC	2 cut(s)	331, 514
Hin1II	CATG	1 cut(s)	592
Hin6I	GCGC	3 cut(s)	86, 378, 561
HinP1I	GCGC	3 cut(s)	86, 378, 561
HinfI	GANTC	3 cut(s)	8, 24, 100
HpaII	CCGG	2 cut(s)	165, 263
HphI	GGTGA	1 cut(s)	173
Hpy166II	GTNNAC	2 cut(s)	219, 406
Hpy188I	TCNGA	7 cut(s)	111, 153, 203, 307, 357, 474, 540
Hpy188III	TCNNGA	1 cut(s)	491
Hpy8I	GTNNAC	2 cut(s)	219, 406
Hpy99I	CGWCG	3 cut(s)	295, 333, 516
HpyCH4IV	ACGT	1 cut(s)	285
HpyCH4V	TGCA	2 cut(s)	60, 575
HpyF10VI	GCNNNNNNNGC	4 cut(s)	389, 398, 572, 581
HpyF3I	CTNAG	4 cut(s)	150, 306, 321, 354
HpySE526I	ACGT	1 cut(s)	285
Hsp92I	GRCGYC	2 cut(s)	331, 514
Hsp92II	CATG	1 cut(s)	592
HspAI	GCGC	3 cut(s)	86, 378, 561
Kzo9I	GATC	2 cut(s)	155, 485
LmnI	GCTCC	1 cut(s)	112
Lsp1109I	GCAGC	2 cut(s)	367, 550
LweI	GCATC	1 cut(s)	465
MaeII	ACGT	1 cut(s)	285
MalI	GATC	2 cut(s)	157, 487
MbiI	CCGCTC	1 cut(s)	197
MboI	GATC	2 cut(s)	155, 485
MboII	GAAGA	2 cut(s)	3, 426
MflI	RGATCY	1 cut(s)	485
MhlI	GDGCHC	3 cut(s)	109, 238, 552
MluCI	AATT	1 cut(s)	117
MlyI	GAGTC	2 cut(s)	18, 109
MmeI	TCCRAC	1 cut(s)	226
MnlI	CCTC	6 cut(s)	301, 330, 336, 344, 519, 527
MseI	TTAA	3 cut(s)	249, 386, 569
MslI	CAYNNNNRTG	1 cut(s)	277
MspI	CCGG	2 cut(s)	165, 263
MspR9I	CCNGG	4 cut(s)	165, 227, 263, 414
MvaI	CCWGG	2 cut(s)	227, 414
MvnI	CGCG	2 cut(s)	378, 561
MwoI	GCNNNNNNNGC	4 cut(s)	389, 398, 572, 581
NciI	CCSGG	2 cut(s)	165, 263
NdeII	GATC	2 cut(s)	155, 485
NlaIII	CATG	1 cut(s)	592
NspI	RCATGY	1 cut(s)	592
PciI	ACATGT	1 cut(s)	588
PcsI	WCGNNNNNNNCGW	2 cut(s)	342, 525
PfeI	GAWTC	1 cut(s)	8
PkrI	GCNGC	4 cut(s)	377, 382, 560, 565
PleI	GAGTC	2 cut(s)	18, 108
PpsI	GAGTC	2 cut(s)	18, 108
PscI	ACATGT	1 cut(s)	588
Psp124BI	GAGCTC	1 cut(s)	109
Psp1406I	AACGTT	1 cut(s)	285
Psp6I	CCWGG	2 cut(s)	225, 412
PspFI	CCCAGC	1 cut(s)	127
PspGI	CCWGG	2 cut(s)	225, 412
PsuI	RGATCY	1 cut(s)	485
RseI	CAYNNNNRTG	1 cut(s)	277
SacI	GAGCTC	1 cut(s)	109
SaqAI	TTAA	3 cut(s)	249, 386, 569
SatI	GCNGC	4 cut(s)	376, 381, 559, 564
Sau3AI	GATC	2 cut(s)	155, 485
SchI	GAGTC	2 cut(s)	18, 109
ScrFI	CCNGG	4 cut(s)	165, 227, 263, 414
SduI	GDGCHC	3 cut(s)	109, 238, 552
SetI	ASST	4 cut(s)	109, 228, 288, 415
SfaNI	GCATC	1 cut(s)	465
SmiMI	CAYNNNNRTG	1 cut(s)	277
SmlI	CTYRAG	1 cut(s)	489
SmoI	CTYRAG	1 cut(s)	489
Sse9I	AATT	1 cut(s)	117
SsiI	CCGC	5 cut(s)	195, 230, 376, 417, 559
SstI	GAGCTC	1 cut(s)	109
StyD4I	CCNGG	4 cut(s)	163, 225, 261, 412
TaiI	ACGT	1 cut(s)	288
TaqI	TCGA	7 cut(s)	103, 328, 336, 397, 511, 519, 580
TasI	AATT	1 cut(s)	117
TauI	GCSGC	2 cut(s)	378, 561
TfiI	GAWTC	1 cut(s)	8
Tru1I	TTAA	3 cut(s)	249, 386, 569
Tru9I	TTAA	3 cut(s)	249, 386, 569
TseI	GCWGC	2 cut(s)	380, 563
TspDTI	ATGAA	1 cut(s)	261
TspGWI	ACGGA	1 cut(s)	279
XapI	RAATTY	1 cut(s)	117
XceI	RCATGY	1 cut(s)	592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.