Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000870

Physical Location & Seq

Genomic Coordinates Forward (+)

7890833 .. 7902282

Gene Structure 11450 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG096000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGCGGATTCATCATCCACCGGACCACTATGTTCTCTCCTTACAAGATGGGCATGTTCAATCCCTCTCACAGATGGGCAAGTTCAACCTCGCTCACAGAGTGGTGCTTGCGCCATTGACGAGGTGTCGAGCATTGAACAAAGTTCCTCAGCCATCACTGGTCGAGTACTATTCTCAGAGGTCAACCCCCGGCGGCTTTCTTATCACATAAGGCACTTCGCCCTCGGAAGCAAGCGTTGGTTTTTCAACCTGGTGGGGGATCACCAATTTCTTCAACCAACAACCCCATCGCAAAGAGATGGAAAGTACGTTCTCTTGCCAGATGGGTCTCATGACGCTTACTCTGAACCTCGACGCCTCGAGACCCACGAAATACCCCAGATCGTTGAGCAGTATCGCCACGCTGCCTTGAATGCCATTCGCGCAGGTCAGTATCTATGCAACACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009605 GO:0009607 GO:0009620 GO:0009694 GO:0009695 GO:0009791 GO:0009908 GO:0009987 GO:0010035 GO:0010193 GO:0010817 GO:0016053 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0019752 GO:0022414 GO:0031407 GO:0031408 GO:0032501 GO:0032502 GO:0032787 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042579 GO:0042802 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046677 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0055114 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0090567 GO:0099402 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

149

Amino Acids

16.62

Weight (kDa)

7.0

Isoelectric Point (pI)

67.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06050 AT2G06050 AT2G06050
fragaria_vesca	FvH4_1g08451 FvH4_1g08452 FvH4_1g08453 FvH4_1g08454 FvH4_1g08510 FvH4_1g08510 FvH4_1g08510 FvH4_1g08510
malus_domestica	MD00G1142600.v1.1 MD02G1089100.v1.1 MD12G1067300.v1.1 MD15G1216200.v1.1
prunus_persica	Prupe.7G200800_v2.0.a1
pyrus_communis	pycom02g07130 pycom15g19180
rosa_chinensis	RchiOBHm_Chr2g0094561 RchiOBHm_Chr2g0094611 RchiOBHm_Chr2g0094631 RchiOBHm_Chr2g0094641 RchiOBHm_Chr2g0150041 RchiOBHm_Chr7g0211621 RchiOBHm_Chr7g0230281
rosa_laevigata	RLG00000002990 RLG00000016504 RLG00000016506 RLG00000016507 RLG00000020462
rosa_multiflora	Rmu_co8133296.1_g000001 Rmu_co8390375.1_g000001 Rmu_sc0003760.1_g000017 Rmu_sc0004232.1_g000012 Rmu_sc0004359.1_g000033 Rmu_sc0004359.1_g000036 Rmu_sc0006422.1_g000001 Rmu_sc0009445.1_g000018 Rmu_sc0017068.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097490 Rroxscaffold_2G00147030 Rroxscaffold_2G00147040 Rroxscaffold_2G00147050 Rroxscaffold_3G00247670
rosa_rugosa	Rorug02G0045400 Rorug02G0045400 Rorug02G0045600 Rorug02G0045700 Rorug02G0418000 Rorug07G0126300
rosa_samantha	Rh2AG093100 Rh2BG093400 Rh2BG093700 Rh2BG489500 Rh2CG095800 Rh2CG096000 Rh2DG092200 Rh2DG092400 Rh7AG259000 Rh7BG253300 Rh7CG276100 Rh7DG266600
rosa_wichuraiana	Rw0G003550 Rw0G003560 Rw2G038940 Rw7G022140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	416
AccII	CGCG	1 cut(s)	423
AciI	CCGC	2 cut(s)	5, 193
AclWI	GGATC	1 cut(s)	267
AcyI	GRCGYC	1 cut(s)	355
AdeI	CACNNNGTG	1 cut(s)	101
AfaI	GTAC	2 cut(s)	168, 308
AfiI	CCNNNNNNNGG	1 cut(s)	256
AgsI	TTSAA	6 cut(s)	60, 86, 137, 247, 275, 412
AhdI	GACNNNNNGTC	1 cut(s)	124
AjnI	CCWGG	1 cut(s)	249
AjuI	GAANNNNNNNTTGG	2 cut(s)	220, 252
AloI	GAACNNNNNNTCC	2 cut(s)	294, 326
Alw26I	GTCTC	2 cut(s)	333, 356
AlwI	GGATC	1 cut(s)	267
Ama87I	CYCGRG	1 cut(s)	359
ApeKI	GCWGC	1 cut(s)	404
AspLEI	GCGC	2 cut(s)	113, 425
AspS9I	GGNCC	1 cut(s)	23
AsuC2I	CCSGG	1 cut(s)	190
AsuHPI	GGTGA	1 cut(s)	254
AvaI	CYCGRG	1 cut(s)	359
AvaII	GGWCC	1 cut(s)	23
BbvCI	CCTCAGC	1 cut(s)	148
BbvI	GCAGC	1 cut(s)	391
BccI	CCATC	6 cut(s)	42, 68, 161, 293, 295, 317
BciT130I	CCWGG	1 cut(s)	251
BcnI	CCSGG	1 cut(s)	190
BcoDI	GTCTC	2 cut(s)	333, 356
BfuAI	ACCTGC	1 cut(s)	416
BisI	GCNGC	2 cut(s)	194, 405
BlsI	GCNGC	2 cut(s)	195, 406
BmcAI	AGTACT	1 cut(s)	168
Bme1390I	CCNGG	2 cut(s)	190, 251
Bme18I	GGWCC	1 cut(s)	23
BmeRI	GACNNNNNGTC	1 cut(s)	124
BmeT110I	CYCGRG	1 cut(s)	359
BmgT120I	GGNCC	1 cut(s)	23
BmrFI	CCNGG	2 cut(s)	190, 251
Bpu10I	CCTNAGC	1 cut(s)	148
BpuMI	CCSGG	1 cut(s)	190
BsaHI	GRCGYC	1 cut(s)	355
BsaI	GGTCTC	2 cut(s)	333, 356
BsaJI	CCNNGG	2 cut(s)	188, 223
BsaWI	WCCGGW	1 cut(s)	20
Bsc4I	CCNNNNNNNGG	1 cut(s)	256
Bse1I	ACTGG	1 cut(s)	163
BseBI	CCWGG	1 cut(s)	251
BseDI	CCNNGG	2 cut(s)	188, 223
BseGI	GGATG	1 cut(s)	14
BseLI	CCNNNNNNNGG	1 cut(s)	256
BseMII	CTCAG	2 cut(s)	162, 189
BseNI	ACTGG	1 cut(s)	163
BseXI	GCAGC	1 cut(s)	391
Bsh1236I	CGCG	1 cut(s)	423
BsiHKCI	CYCGRG	1 cut(s)	359
BsiSI	CCGG	2 cut(s)	21, 190
BslI	CCNNNNNNNGG	1 cut(s)	256
BsmAI	GTCTC	2 cut(s)	333, 356
BsmI	GAATGC	1 cut(s)	418
Bso31I	GGTCTC	2 cut(s)	333, 356
BsoBI	CYCGRG	1 cut(s)	359
Bsp143I	GATC	2 cut(s)	259, 381
BspACI	CCGC	2 cut(s)	5, 193
BspCNI	CTCAG	2 cut(s)	161, 188
BspFNI	CGCG	1 cut(s)	423
BspHI	TCATGA	1 cut(s)	331
BspMI	ACCTGC	1 cut(s)	416
BspPI	GGATC	1 cut(s)	267
BspTNI	GGTCTC	2 cut(s)	333, 356
BsrI	ACTGG	1 cut(s)	163
BssECI	CCNNGG	2 cut(s)	188, 223
BssMI	GATC	2 cut(s)	259, 381
BssNI	GRCGYC	1 cut(s)	355
Bst2UI	CCWGG	1 cut(s)	251
BstACI	GRCGYC	1 cut(s)	355
BstC8I	GCNNGC	2 cut(s)	109, 233
BstDEI	CTNAG	2 cut(s)	148, 175
BstF5I	GGATG	1 cut(s)	14
BstFNI	CGCG	1 cut(s)	423
BstHHI	GCGC	2 cut(s)	113, 425
BstKTI	GATC	2 cut(s)	262, 384
BstMAI	GTCTC	2 cut(s)	333, 356
BstMBI	GATC	2 cut(s)	259, 381
BstMWI	GCNNNNNNNGC	2 cut(s)	413, 422
BstNI	CCWGG	1 cut(s)	251
BstNSI	RCATGY	1 cut(s)	57
BstSCI	CCNGG	2 cut(s)	188, 249
BstUI	CGCG	1 cut(s)	423
BstV1I	GCAGC	1 cut(s)	391
BtgZI	GCGATG	1 cut(s)	273
BtsCI	GGATG	1 cut(s)	14
BtsIMutI	CAGTG	1 cut(s)	156
BveI	ACCTGC	1 cut(s)	416
Cac8I	GCNNGC	2 cut(s)	109, 233
CciI	TCATGA	1 cut(s)	331
CfoI	GCGC	2 cut(s)	113, 425
Cfr13I	GGNCC	1 cut(s)	23
CseI	GACGC	2 cut(s)	344, 363
CsiI	ACCWGGT	1 cut(s)	249
Csp6I	GTAC	2 cut(s)	167, 307
CviAII	CATG	2 cut(s)	54, 332
CviJI	RGCY	2 cut(s)	152, 196
CviKI_1	RGCY	2 cut(s)	152, 196
CviQI	GTAC	2 cut(s)	167, 307
DdeI	CTNAG	2 cut(s)	148, 175
DpnI	GATC	2 cut(s)	261, 383
DpnII	GATC	2 cut(s)	259, 381
DraIII	CACNNNGTG	1 cut(s)	101
DriI	GACNNNNNGTC	1 cut(s)	124
Eam1105I	GACNNNNNGTC	1 cut(s)	124
EciI	GGCGGA	1 cut(s)	20
Eco31I	GGTCTC	2 cut(s)	333, 356
Eco47I	GGWCC	1 cut(s)	23
Eco88I	CYCGRG	1 cut(s)	359
EcoRII	CCWGG	1 cut(s)	249
FaeI	CATG	2 cut(s)	57, 335
FaiI	YATR	6 cut(s)	31, 55, 209, 333, 439, 448
FatI	CATG	2 cut(s)	53, 331
Fnu4HI	GCNGC	2 cut(s)	194, 405
Fsp4HI	GCNGC	2 cut(s)	194, 405
GlaI	GCGC	2 cut(s)	112, 424
GluI	GCNGC	2 cut(s)	194, 405
HapII	CCGG	2 cut(s)	21, 190
HgaI	GACGC	2 cut(s)	344, 363
HhaI	GCGC	2 cut(s)	113, 425
Hin1I	GRCGYC	1 cut(s)	355
Hin1II	CATG	2 cut(s)	57, 335
Hin6I	GCGC	2 cut(s)	111, 423
HinP1I	GCGC	2 cut(s)	111, 423
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HinfI	GANTC	1 cut(s)	8
HpaII	CCGG	2 cut(s)	21, 190
HphI	GGTGA	1 cut(s)	254
Hpy166II	GTNNAC	1 cut(s)	184
Hpy188I	TCNGA	3 cut(s)	178, 227, 346
Hpy188III	TCNNGA	2 cut(s)	332, 361
Hpy8I	GTNNAC	1 cut(s)	184
Hpy99I	CGWCG	1 cut(s)	357
HpyCH4IV	ACGT	1 cut(s)	309
HpyCH4V	TGCA	1 cut(s)	441
HpyF10VI	GCNNNNNNNGC	2 cut(s)	413, 422
HpyF3I	CTNAG	2 cut(s)	148, 175
HpySE526I	ACGT	1 cut(s)	309
Hsp92I	GRCGYC	1 cut(s)	355
Hsp92II	CATG	2 cut(s)	57, 335
HspAI	GCGC	2 cut(s)	111, 423
Kzo9I	GATC	2 cut(s)	259, 381
LpnPI	CCDG	8 cut(s)	34, 144, 203, 236, 263, 333, 392, 411
Lsp1109I	GCAGC	1 cut(s)	391
MabI	ACCWGGT	1 cut(s)	249
MaeII	ACGT	1 cut(s)	309
MalI	GATC	2 cut(s)	261, 383
MboI	GATC	2 cut(s)	259, 381
MboII	GAAGA	1 cut(s)	263
MluCI	AATT	1 cut(s)	266
MnlI	CCTC	8 cut(s)	75, 99, 115, 157, 172, 233, 360, 368
MspI	CCGG	2 cut(s)	21, 190
MspR9I	CCNGG	2 cut(s)	190, 251
Mva1269I	GAATGC	1 cut(s)	418
MvaI	CCWGG	1 cut(s)	251
MvnI	CGCG	1 cut(s)	423
MwoI	GCNNNNNNNGC	2 cut(s)	413, 422
NciI	CCSGG	1 cut(s)	190
NdeII	GATC	2 cut(s)	259, 381
NlaIII	CATG	2 cut(s)	57, 335
NspI	RCATGY	1 cut(s)	57
PaeR7I	CTCGAG	1 cut(s)	359
PagI	TCATGA	1 cut(s)	331
PcsI	WCGNNNNNNNCGW	1 cut(s)	366
PctI	GAATGC	1 cut(s)	418
PfeI	GAWTC	1 cut(s)	8
PkrI	GCNGC	2 cut(s)	195, 406
Psp6I	CCWGG	1 cut(s)	249
PspGI	CCWGG	1 cut(s)	249
PspPI	GGNCC	1 cut(s)	23
RsaI	GTAC	2 cut(s)	168, 308
RsaNI	GTAC	2 cut(s)	167, 307
SatI	GCNGC	2 cut(s)	194, 405
Sau3AI	GATC	2 cut(s)	259, 381
Sau96I	GGNCC	1 cut(s)	23
ScaI	AGTACT	1 cut(s)	168
ScrFI	CCNGG	2 cut(s)	190, 251
SetI	ASST	7 cut(s)	91, 126, 183, 252, 312, 352, 430
SexAI	ACCWGGT	1 cut(s)	249
Sfr274I	CTCGAG	1 cut(s)	359
SinI	GGWCC	1 cut(s)	23
SlaI	CTCGAG	1 cut(s)	359
SmlI	CTYRAG	1 cut(s)	359
SmoI	CTYRAG	1 cut(s)	359
Sse9I	AATT	1 cut(s)	266
SsiI	CCGC	2 cut(s)	5, 193
StyD4I	CCNGG	2 cut(s)	188, 249
TaiI	ACGT	1 cut(s)	312
TaqI	TCGA	4 cut(s)	128, 163, 352, 360
TasI	AATT	1 cut(s)	266
TatI	WGTACW	1 cut(s)	166
TauI	GCSGC	1 cut(s)	196
TfiI	GAWTC	1 cut(s)	8
TscAI	CASTG	1 cut(s)	163
TseI	GCWGC	1 cut(s)	404
TspRI	CASTG	1 cut(s)	163
VpaK11BI	GGWCC	1 cut(s)	23
XceI	RCATGY	1 cut(s)	57
XhoI	CTCGAG	1 cut(s)	359
ZrmI	AGTACT	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.