Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0000870

Physical Location & Seq

Genomic Coordinates Forward (+)

4512053 .. 4518131

Gene Structure 6079 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g08510.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGGCAGATTCTTCATCCACGGGACTCACCCTGTTCTCTCCTTACAAGATGGGCATGTTCAACCTCTCTCATAGAGTGGTACTTGCGCCAATGACGAGGTGTCGAGCGTTGAACGAACTTCCGCAGCCGGCGCTGGTGGAGTACTATTCTCAGAGGGCAACCCCCGGTGGCTTTCTAATCACTGAAGGCACTTCGCCGTCCGACCAAAGCGCCGGGTTTCCACATGTTCCTGGGATTTACACCGATGAACAAGTTGAGGCATGGAAGAAGGTGGTCGATGCTGTTCACGCCAAAGGTGCCATCATTTTCTGTCAACTTTGGCATGTAGGTCGTGCTTCTCATCAAGTTCTTCAACGAGGTGGGGGGTCACCAATTTCTTCAACCAGCAATGCCATCTCAAAGAGGTGGAAAGTTCTGTTGCCTGATGGGTCTCATGACGCTTACCCTGAACCTCGACGACTCGAGACCCATGAAATACCCCAGATTGTTGAGCAGTACCGTCAGGCTGCCCTAAATGCCATTCGAGCAGGTTTTGATGGAATTGAGATCCATTCGGCACATGGTTACCTAATCGATCAATTCTTGAAAGATGGGATAAACGATCGAACTGATGAGTACGGTGGCTCACTTGCAAACCGATGCAAGTTCTTGATCCAAACTGTTGAAGCAGTAGTTGAAGCCATTGGTGCTGATAGAGTTGCCGTCAGAATCTCACCAGCTATTGACCACCTTGACGCTACAGACTCCGACCCAATTGGCCTAGGCTTGGCAGTGATTGAAAGACTTAACAAGCTTCAACAGAACATAGGCTCAAAGCTCGCTTATCTTCATGTTACTCAGCCTCGTTTCGCAGCTAATGGCCTAGTAGAGTTTGATCAAGACGAAGCTCGGTTTATGAGGACTCTTAGAAACGCTTATGAAGGTACATTCATGGCTAGTGGAGGGTTCAATAGAGAGCTAGGAATGGAAGCTGTGGCTTCCGGTGATACCGATTTGGTGTCGTATGGACGACAGTTTATCTCAAACCCTGACTTGGTGTTGAGGTTTAAGCTGAATGCTCCATTGAACAAGTATAATAGGGAGACTTTCTACACTCATGATCCTGTTGTTGGGTACACAGACTATCCTTTTCTAGCTGAACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009605 GO:0009607 GO:0009620 GO:0009694 GO:0009695 GO:0009791 GO:0009908 GO:0009987 GO:0010035 GO:0010193 GO:0010817 GO:0016053 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0019752 GO:0022414 GO:0031407 GO:0031408 GO:0032501 GO:0032502 GO:0032787 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042579 GO:0042802 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046677 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0055114 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0090567 GO:0099402 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

382

Amino Acids

42.13

Weight (kDa)

5.85

Isoelectric Point (pI)

39.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_FMN	PF00724	2 - 328	1.7e-76	NADH:flavin oxidoreductase / NADH oxidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06050 AT2G06050 AT2G06050
fragaria_vesca	FvH4_1g08451 FvH4_1g08452 FvH4_1g08453 FvH4_1g08454 FvH4_1g08510 FvH4_1g08510 FvH4_1g08510 FvH4_1g08510
malus_domestica	MD00G1142600.v1.1 MD02G1089100.v1.1 MD12G1067300.v1.1 MD15G1216200.v1.1
prunus_persica	Prupe.7G200800_v2.0.a1
pyrus_communis	pycom02g07130 pycom15g19180
rosa_chinensis	RchiOBHm_Chr2g0094561 RchiOBHm_Chr2g0094611 RchiOBHm_Chr2g0094631 RchiOBHm_Chr2g0094641 RchiOBHm_Chr2g0150041 RchiOBHm_Chr7g0211621 RchiOBHm_Chr7g0230281
rosa_laevigata	RLG00000002990 RLG00000016504 RLG00000016506 RLG00000016507 RLG00000020462
rosa_multiflora	Rmu_co8133296.1_g000001 Rmu_co8390375.1_g000001 Rmu_sc0003760.1_g000017 Rmu_sc0004232.1_g000012 Rmu_sc0004359.1_g000033 Rmu_sc0004359.1_g000036 Rmu_sc0006422.1_g000001 Rmu_sc0009445.1_g000018 Rmu_sc0017068.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097490 Rroxscaffold_2G00147030 Rroxscaffold_2G00147040 Rroxscaffold_2G00147050 Rroxscaffold_3G00247670
rosa_rugosa	Rorug02G0045400 Rorug02G0045400 Rorug02G0045600 Rorug02G0045700 Rorug02G0418000 Rorug07G0126300
rosa_samantha	Rh2AG093100 Rh2BG093400 Rh2BG093700 Rh2BG489500 Rh2CG095800 Rh2CG096000 Rh2DG092200 Rh2DG092400 Rh7AG259000 Rh7BG253300 Rh7CG276100 Rh7DG266600
rosa_wichuraiana	Rw0G003550 Rw0G003560 Rw2G038940 Rw7G022140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	518
AccB1I	GGYRCC	1 cut(s)	296
AciI	CCGC	1 cut(s)	122
AclWI	GGATC	3 cut(s)	541, 646, 1094
AcuI	CTGAAG	1 cut(s)	204
AfaI	GTAC	6 cut(s)	81, 143, 497, 617, 925, 1115
AfiI	CCNNNNNNNGG	3 cut(s)	766, 1033, 1109
AflIII	ACRYGT	1 cut(s)	223
AhdI	GACNNNNNGTC	1 cut(s)	99
AjnI	CCWGG	1 cut(s)	229
AluBI	AGCT	9 cut(s)	719, 793, 817, 854, 887, 958, 971, 1051, 1136
AluI	AGCT	9 cut(s)	719, 793, 817, 854, 887, 958, 971, 1051, 1136
Alw26I	GTCTC	3 cut(s)	435, 458, 1076
AlwI	GGATC	3 cut(s)	541, 646, 1094
Ama87I	CYCGRG	1 cut(s)	461
AoxI	GGCC	2 cut(s)	757, 859
ApeKI	GCWGC	3 cut(s)	124, 506, 851
AspA2I	CCTAGG	1 cut(s)	760
AspLEI	GCGC	3 cut(s)	88, 133, 212
AsuC2I	CCSGG	2 cut(s)	165, 214
AsuHPI	GGTGA	4 cut(s)	19, 360, 705, 995
AvaI	CYCGRG	1 cut(s)	461
AvrII	CCTAGG	1 cut(s)	760
BanI	GGYRCC	1 cut(s)	296
BbvI	GCAGC	3 cut(s)	136, 493, 863
BccI	CCATC	6 cut(s)	43, 308, 401, 419, 530, 584
BceAI	ACGGC	2 cut(s)	181, 686
BcgI	CGANNNNNNTGC	2 cut(s)	311, 345
BciT130I	CCWGG	1 cut(s)	231
BclI	TGATCA	1 cut(s)	874
BcnI	CCSGG	2 cut(s)	165, 214
BcoDI	GTCTC	3 cut(s)	435, 458, 1076
BfaI	CTAG	5 cut(s)	761, 863, 936, 959, 1133
BfmI	CTRYAG	1 cut(s)	738
BfoI	RGCGCY	2 cut(s)	134, 213
BfuAI	ACCTGC	1 cut(s)	518
BisI	GCNGC	3 cut(s)	125, 507, 852
BlnI	CCTAGG	1 cut(s)	760
BlsI	GCNGC	3 cut(s)	126, 508, 853
BmcAI	AGTACT	1 cut(s)	143
Bme1390I	CCNGG	3 cut(s)	165, 214, 231
BmeRI	GACNNNNNGTC	1 cut(s)	99
BmeT110I	CYCGRG	1 cut(s)	461
BmiI	GGNNCC	1 cut(s)	298
BmrFI	CCNGG	3 cut(s)	165, 214, 231
BmsI	GCATC	2 cut(s)	268, 629
BpuMI	CCSGG	2 cut(s)	165, 214
Bsa29I	ATCGAT	1 cut(s)	573
BsaI	GGTCTC	2 cut(s)	435, 458
BsaJI	CCNNGG	4 cut(s)	18, 163, 230, 760
BsaWI	WCCGGW	1 cut(s)	980
Bsc4I	CCNNNNNNNGG	3 cut(s)	766, 1033, 1109
Bse118I	RCCGGY	1 cut(s)	127
Bse3DI	GCAATG	1 cut(s)	394
BseBI	CCWGG	1 cut(s)	231
BseCI	ATCGAT	1 cut(s)	573
BseDI	CCNNGG	4 cut(s)	18, 163, 230, 760
BseGI	GGATG	1 cut(s)	14
BseLI	CCNNNNNNNGG	3 cut(s)	766, 1033, 1109
BseMI	GCAATG	1 cut(s)	394
BseMII	CTCAG	2 cut(s)	164, 851
BseXI	GCAGC	3 cut(s)	136, 493, 863
Bsh1285I	CGRYCG	1 cut(s)	604
BshFI	GGCC	2 cut(s)	759, 861
BshNI	GGYRCC	1 cut(s)	296
BshVI	ATCGAT	1 cut(s)	573
BsiEI	CGRYCG	1 cut(s)	604
BsiHKCI	CYCGRG	1 cut(s)	461
BsiSI	CCGG	4 cut(s)	128, 165, 213, 981
BslFI	GGGAC	1 cut(s)	36
BslI	CCNNNNNNNGG	3 cut(s)	766, 1033, 1109
BsmAI	GTCTC	3 cut(s)	435, 458, 1076
BsmFI	GGGAC	1 cut(s)	36
BsmI	GAATGC	1 cut(s)	1060
BsnI	GGCC	2 cut(s)	759, 861
Bso31I	GGTCTC	2 cut(s)	435, 458
BsoBI	CYCGRG	1 cut(s)	461
Bsp143I	GATC	6 cut(s)	546, 574, 601, 651, 874, 1099
BspACI	CCGC	1 cut(s)	122
BspANI	GGCC	2 cut(s)	759, 861
BspCNI	CTCAG	2 cut(s)	163, 850
BspDI	ATCGAT	1 cut(s)	573
BspHI	TCATGA	2 cut(s)	433, 1096
BspLI	GGNNCC	1 cut(s)	298
BspMI	ACCTGC	1 cut(s)	518
BspPI	GGATC	3 cut(s)	541, 646, 1094
BspT107I	GGYRCC	1 cut(s)	296
BspTNI	GGTCTC	2 cut(s)	435, 458
BsrDI	GCAATG	1 cut(s)	394
BsrFI	RCCGGY	1 cut(s)	127
BssAI	RCCGGY	1 cut(s)	127
BssECI	CCNNGG	4 cut(s)	18, 163, 230, 760
BssMI	GATC	6 cut(s)	546, 574, 601, 651, 874, 1099
BssT1I	CCWWGG	1 cut(s)	760
Bst2UI	CCWGG	1 cut(s)	231
Bst4CI	ACNGT	5 cut(s)	500, 620, 661, 1014, 1143
BstC8I	GCNNGC	2 cut(s)	129, 819
BstDEI	CTNAG	3 cut(s)	150, 837, 905
BstDSI	CCRYGG	1 cut(s)	18
BstEII	GGTNACC	2 cut(s)	366, 563
BstF5I	GGATG	1 cut(s)	14
BstH2I	RGCGCY	2 cut(s)	134, 213
BstHHI	GCGC	3 cut(s)	88, 133, 212
BstKTI	GATC	6 cut(s)	549, 577, 604, 654, 877, 1102
BstMAI	GTCTC	3 cut(s)	435, 458, 1076
BstMBI	GATC	6 cut(s)	546, 574, 601, 651, 874, 1099
BstMCI	CGRYCG	1 cut(s)	604
BstMWI	GCNNNNNNNGC	6 cut(s)	130, 287, 296, 515, 524, 686
BstNI	CCWGG	1 cut(s)	231
BstNSI	RCATGY	3 cut(s)	58, 227, 326
BstPI	GGTNACC	2 cut(s)	366, 563
BstSCI	CCNGG	3 cut(s)	163, 212, 229
BstSFI	CTRYAG	1 cut(s)	738
BstV1I	GCAGC	3 cut(s)	136, 493, 863
BstX2I	RGATCY	1 cut(s)	546
BstYI	RGATCY	1 cut(s)	546
Bsu15I	ATCGAT	1 cut(s)	573
BsuRI	GGCC	2 cut(s)	759, 861
BsuTUI	ATCGAT	1 cut(s)	573
BtgI	CCRYGG	1 cut(s)	18
BtsCI	GGATG	1 cut(s)	14
BtsI	GCAGTG	1 cut(s)	777
BtsIMutI	CAGTG	2 cut(s)	180, 777
BveI	ACCTGC	1 cut(s)	518
Cac8I	GCNNGC	2 cut(s)	129, 819
CciI	TCATGA	2 cut(s)	433, 1096
CfoI	GCGC	3 cut(s)	88, 133, 212
Cfr10I	RCCGGY	1 cut(s)	127
ClaI	ATCGAT	1 cut(s)	573
CseI	GACGC	2 cut(s)	446, 743
Csp6I	GTAC	6 cut(s)	80, 142, 496, 616, 924, 1114
CviQI	GTAC	6 cut(s)	80, 142, 496, 616, 924, 1114
DdeI	CTNAG	3 cut(s)	150, 837, 905
DpnI	GATC	6 cut(s)	548, 576, 603, 653, 876, 1101
DpnII	GATC	6 cut(s)	546, 574, 601, 651, 874, 1099
DriI	GACNNNNNGTC	1 cut(s)	99
Eam1105I	GACNNNNNGTC	1 cut(s)	99
Eco130I	CCWWGG	1 cut(s)	760
Eco31I	GGTCTC	2 cut(s)	435, 458
Eco57I	CTGAAG	1 cut(s)	204
Eco88I	CYCGRG	1 cut(s)	461
Eco91I	GGTNACC	2 cut(s)	366, 563
EcoO65I	GGTNACC	2 cut(s)	366, 563
EcoRII	CCWGG	1 cut(s)	229
EcoT14I	CCWWGG	1 cut(s)	760
ErhI	CCWWGG	1 cut(s)	760
FaqI	GGGAC	1 cut(s)	36
FbaI	TGATCA	1 cut(s)	874
Fnu4HI	GCNGC	3 cut(s)	125, 507, 852
Fsp4HI	GCNGC	3 cut(s)	125, 507, 852
FspBI	CTAG	5 cut(s)	761, 863, 936, 959, 1133
GlaI	GCGC	3 cut(s)	87, 132, 211
GluI	GCNGC	3 cut(s)	125, 507, 852
HaeII	RGCGCY	2 cut(s)	134, 213
HaeIII	GGCC	2 cut(s)	759, 861
HapII	CCGG	4 cut(s)	128, 165, 213, 981
HgaI	GACGC	2 cut(s)	446, 743
HhaI	GCGC	3 cut(s)	88, 133, 212
Hin6I	GCGC	3 cut(s)	86, 131, 210
HinP1I	GCGC	3 cut(s)	86, 131, 210
HincII	GTYRAC	1 cut(s)	314
HindII	GTYRAC	1 cut(s)	314
HindIII	AAGCTT	1 cut(s)	791
HinfI	GANTC	6 cut(s)	8, 24, 459, 708, 743, 901
HpaII	CCGG	4 cut(s)	128, 165, 213, 981
HphI	GGTGA	4 cut(s)	19, 360, 705, 995
Hpy166II	GTNNAC	3 cut(s)	286, 314, 1116
Hpy188I	TCNGA	4 cut(s)	153, 202, 707, 748
Hpy188III	TCNNGA	6 cut(s)	434, 463, 583, 649, 878, 1097
Hpy8I	GTNNAC	3 cut(s)	286, 314, 1116
Hpy99I	CGWCG	1 cut(s)	459
HpyAV	CCTTC	3 cut(s)	179, 262, 914
HpyCH4III	ACNGT	5 cut(s)	500, 620, 661, 1014, 1143
HpyCH4V	TGCA	2 cut(s)	632, 642
HpyF10VI	GCNNNNNNNGC	6 cut(s)	130, 287, 296, 515, 524, 686
HpyF3I	CTNAG	3 cut(s)	150, 837, 905
HspAI	GCGC	3 cut(s)	86, 131, 210
KroI	GCCGGC	1 cut(s)	127
KroNI	GCCGGC	1 cut(s)	129
Ksp22I	TGATCA	1 cut(s)	874
Kzo9I	GATC	6 cut(s)	546, 574, 601, 651, 874, 1099
LmnI	GCTCC	1 cut(s)	1063
Lsp1109I	GCAGC	3 cut(s)	136, 493, 863
LweI	GCATC	2 cut(s)	268, 629
MaeI	CTAG	5 cut(s)	761, 863, 936, 959, 1133
MaeIII	GTNAC	3 cut(s)	366, 563, 832
MalI	GATC	6 cut(s)	548, 576, 603, 653, 876, 1101
MboI	GATC	6 cut(s)	546, 574, 601, 651, 874, 1099
MboII	GAAGA	5 cut(s)	3, 277, 341, 369, 818
MfeI	CAATTG	1 cut(s)	753
MflI	RGATCY	1 cut(s)	546
MluCI	AATT	4 cut(s)	372, 540, 578, 753
MlyI	GAGTC	4 cut(s)	18, 453, 737, 895
MmeI	TCCRAC	2 cut(s)	225, 771
MroNI	GCCGGC	1 cut(s)	127
MseI	TTAA	2 cut(s)	786, 1047
MspI	CCGG	4 cut(s)	128, 165, 213, 981
MspR9I	CCNGG	3 cut(s)	165, 214, 231
MunI	CAATTG	1 cut(s)	753
Mva1269I	GAATGC	1 cut(s)	1060
MvaI	CCWGG	1 cut(s)	231
MwoI	GCNNNNNNNGC	6 cut(s)	130, 287, 296, 515, 524, 686
NaeI	GCCGGC	1 cut(s)	129
NciI	CCSGG	2 cut(s)	165, 214
NdeII	GATC	6 cut(s)	546, 574, 601, 651, 874, 1099
NgoMIV	GCCGGC	1 cut(s)	127
NlaIV	GGNNCC	1 cut(s)	298
NmuCI	GTSAC	1 cut(s)	366
NspI	RCATGY	3 cut(s)	58, 227, 326
PaeR7I	CTCGAG	1 cut(s)	461
PagI	TCATGA	2 cut(s)	433, 1096
PciI	ACATGT	1 cut(s)	223
PctI	GAATGC	1 cut(s)	1060
PdiI	GCCGGC	1 cut(s)	129
PfeI	GAWTC	2 cut(s)	8, 708
PkrI	GCNGC	3 cut(s)	126, 508, 853
Ple19I	CGATCG	1 cut(s)	604
PleI	GAGTC	4 cut(s)	18, 453, 737, 895
PpsI	GAGTC	4 cut(s)	18, 453, 737, 895
PscI	ACATGT	1 cut(s)	223
Psp6I	CCWGG	1 cut(s)	229
PspEI	GGTNACC	2 cut(s)	366, 563
PspGI	CCWGG	1 cut(s)	229
PspN4I	GGNNCC	1 cut(s)	298
PsuI	RGATCY	1 cut(s)	546
PvuI	CGATCG	1 cut(s)	604
RsaI	GTAC	6 cut(s)	81, 143, 497, 617, 925, 1115
RsaNI	GTAC	6 cut(s)	80, 142, 496, 616, 924, 1114
SaqAI	TTAA	2 cut(s)	786, 1047
SatI	GCNGC	3 cut(s)	125, 507, 852
Sau3AI	GATC	6 cut(s)	546, 574, 601, 651, 874, 1099
ScaI	AGTACT	1 cut(s)	143
SchI	GAGTC	4 cut(s)	18, 453, 737, 895
ScrFI	CCNGG	3 cut(s)	165, 214, 231
SfaNI	GCATC	2 cut(s)	268, 629
SfcI	CTRYAG	1 cut(s)	738
Sfr274I	CTCGAG	1 cut(s)	461
SlaI	CTCGAG	1 cut(s)	461
SmlI	CTYRAG	1 cut(s)	461
SmoI	CTYRAG	1 cut(s)	461
Sse9I	AATT	4 cut(s)	372, 540, 578, 753
SsiI	CCGC	1 cut(s)	122
SspMI	CTAG	5 cut(s)	761, 863, 936, 959, 1133
StyD4I	CCNGG	3 cut(s)	163, 212, 229
StyI	CCWWGG	1 cut(s)	760
TaaI	ACNGT	5 cut(s)	500, 620, 661, 1014, 1143
TaqI	TCGA	7 cut(s)	103, 276, 454, 462, 523, 573, 604
TasI	AATT	4 cut(s)	372, 540, 578, 753
TatI	WGTACW	1 cut(s)	141
TfiI	GAWTC	2 cut(s)	8, 708
Tru1I	TTAA	2 cut(s)	786, 1047
Tru9I	TTAA	2 cut(s)	786, 1047
TscAI	CASTG	2 cut(s)	187, 777
TseFI	GTSAC	1 cut(s)	366
TseI	GCWGC	3 cut(s)	124, 506, 851
Tsp45I	GTSAC	1 cut(s)	366
TspDTI	ATGAA	5 cut(s)	261, 486, 818, 919, 933
TspRI	CASTG	2 cut(s)	187, 777
XceI	RCATGY	3 cut(s)	58, 227, 326
XcmI	CCANNNNNNNNNTGG	1 cut(s)	557
XhoI	CTCGAG	1 cut(s)	461
XmaJI	CCTAGG	1 cut(s)	760
XspI	CTAG	5 cut(s)	761, 863, 936, 959, 1133
ZrmI	AGTACT	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.