Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0000870

Physical Location & Seq

Genomic Coordinates Forward (+)

4491697 .. 4492407

Gene Structure 711 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g08452.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGTCTTTCCTGAAAGATGGAATCAACGATCGAACTGATGAGTACGGAGGGTCACTTGCAAACCGTTGCAAATTCTTGATTCAGATTGTTCAAGCTGTAGTTGAAGCCATTGGTGCTGATAAAGTTGCCGTCAGAATCTCACCAGCTCTTGATTTCTATGATGCTACTGACTCCGACCCGATTGGCCTTGGCCTTGCAGTTATTGACAGACTCAATACGCTTCAACACAAGGAAGGCTCAAAGCTTGCTTATCTCCATGTGACTCGGCCTCGTTTCACCACTTATGGATTGGTGCCGACCGAGTTTGATGAGGAAAGAGAAGCTCAATTTATGAGGACTTTGCGAGAAGCTTATGAAGGAACATTCATGGCTAGTGGAGGGTTTACAAGAGAGCTAGGAATGGAAGCCGTGGCGTCTGGTGATGCCGATTTAGTTTCGTATGGCCGGGATTTTATCTCAAACCCTGACTTGGTGTTAAGGTTTAAGCTGAATGCTCCCTTGAACAAGTATATTCAAGAGACTTTCTACACTGATGACCCTGTAGTTGGGTACACACACTACCATTTTCTGAACAAAGAAAGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009605 GO:0009607 GO:0009620 GO:0009694 GO:0009695 GO:0009791 GO:0009908 GO:0009987 GO:0010035 GO:0010193 GO:0010817 GO:0016053 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0019752 GO:0022414 GO:0031407 GO:0031408 GO:0032501 GO:0032502 GO:0032787 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042579 GO:0042802 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046677 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0055114 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0090567 GO:0099402 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

196

Amino Acids

21.87

Weight (kDa)

4.91

Isoelectric Point (pI)

29.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_FMN	PF00724	2 - 167	6.9e-31	NADH:flavin oxidoreductase / NADH oxidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06050 AT2G06050 AT2G06050
fragaria_vesca	FvH4_1g08451 FvH4_1g08452 FvH4_1g08453 FvH4_1g08454 FvH4_1g08510 FvH4_1g08510 FvH4_1g08510 FvH4_1g08510
malus_domestica	MD00G1142600.v1.1 MD02G1089100.v1.1 MD12G1067300.v1.1 MD15G1216200.v1.1
prunus_persica	Prupe.7G200800_v2.0.a1
pyrus_communis	pycom02g07130 pycom15g19180
rosa_chinensis	RchiOBHm_Chr2g0094561 RchiOBHm_Chr2g0094611 RchiOBHm_Chr2g0094631 RchiOBHm_Chr2g0094641 RchiOBHm_Chr2g0150041 RchiOBHm_Chr7g0211621 RchiOBHm_Chr7g0230281
rosa_laevigata	RLG00000002990 RLG00000016504 RLG00000016506 RLG00000016507 RLG00000020462
rosa_multiflora	Rmu_co8133296.1_g000001 Rmu_co8390375.1_g000001 Rmu_sc0003760.1_g000017 Rmu_sc0004232.1_g000012 Rmu_sc0004359.1_g000033 Rmu_sc0004359.1_g000036 Rmu_sc0006422.1_g000001 Rmu_sc0009445.1_g000018 Rmu_sc0017068.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097490 Rroxscaffold_2G00147030 Rroxscaffold_2G00147040 Rroxscaffold_2G00147050 Rroxscaffold_3G00247670
rosa_rugosa	Rorug02G0045400 Rorug02G0045400 Rorug02G0045600 Rorug02G0045700 Rorug02G0418000 Rorug07G0126300
rosa_samantha	Rh2AG093100 Rh2BG093400 Rh2BG093700 Rh2BG489500 Rh2CG095800 Rh2CG096000 Rh2DG092200 Rh2DG092400 Rh7AG259000 Rh7BG253300 Rh7CG276100 Rh7DG266600
rosa_wichuraiana	Rw0G003550 Rw0G003560 Rw2G038940 Rw7G022140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	292
AcoI	YGGCCR	1 cut(s)	442
AcsI	RAATTY	1 cut(s)	71
AcyI	GRCGYC	1 cut(s)	413
AfaI	GTAC	2 cut(s)	44, 551
AfiI	CCNNNNNNNGG	2 cut(s)	469, 545
AgsI	TTSAA	5 cut(s)	92, 104, 224, 502, 515
AluBI	AGCT	7 cut(s)	95, 146, 244, 323, 350, 394, 487
AluI	AGCT	7 cut(s)	95, 146, 244, 323, 350, 394, 487
Alw26I	GTCTC	1 cut(s)	512
AoxI	GGCC	4 cut(s)	184, 190, 266, 442
ApoI	RAATTY	1 cut(s)	71
AsuC2I	CCSGG	1 cut(s)	446
AsuHPI	GGTGA	3 cut(s)	132, 268, 431
BanI	GGYRCC	1 cut(s)	292
BccI	CCATC	1 cut(s)	11
BceAI	ACGGC	2 cut(s)	113, 392
BcnI	CCSGG	1 cut(s)	446
BcoDI	GTCTC	1 cut(s)	512
BfaI	CTAG	2 cut(s)	372, 395
BfmI	CTRYAG	2 cut(s)	96, 540
Bme1390I	CCNGG	1 cut(s)	446
BmiI	GGNNCC	1 cut(s)	294
BmrFI	CCNGG	1 cut(s)	446
BmsI	GCATC	2 cut(s)	151, 412
BpuMI	CCSGG	1 cut(s)	446
BsaHI	GRCGYC	1 cut(s)	413
BsaJI	CCNNGG	2 cut(s)	187, 408
Bsc4I	CCNNNNNNNGG	2 cut(s)	469, 545
BseDI	CCNNGG	2 cut(s)	187, 408
BseLI	CCNNNNNNNGG	2 cut(s)	469, 545
Bsh1285I	CGRYCG	2 cut(s)	31, 300
BshFI	GGCC	4 cut(s)	186, 192, 268, 444
BshNI	GGYRCC	1 cut(s)	292
BsiEI	CGRYCG	2 cut(s)	31, 300
BsiSI	CCGG	1 cut(s)	445
BslI	CCNNNNNNNGG	2 cut(s)	469, 545
BsmAI	GTCTC	1 cut(s)	512
BsmI	GAATGC	1 cut(s)	496
BsnI	GGCC	4 cut(s)	186, 192, 268, 444
Bsp143I	GATC	1 cut(s)	28
BspANI	GGCC	4 cut(s)	186, 192, 268, 444
BspLI	GGNNCC	1 cut(s)	294
BspT107I	GGYRCC	1 cut(s)	292
BssECI	CCNNGG	2 cut(s)	187, 408
BssMI	GATC	1 cut(s)	28
BssNI	GRCGYC	1 cut(s)	413
BssT1I	CCWWGG	1 cut(s)	187
Bst4CI	ACNGT	1 cut(s)	65
BstACI	GRCGYC	1 cut(s)	413
BstC8I	GCNNGC	1 cut(s)	246
BstDSI	CCRYGG	1 cut(s)	408
BstKTI	GATC	1 cut(s)	31
BstMAI	GTCTC	1 cut(s)	512
BstMBI	GATC	1 cut(s)	28
BstMCI	CGRYCG	2 cut(s)	31, 300
BstMWI	GCNNNNNNNGC	1 cut(s)	113
BstSCI	CCNGG	1 cut(s)	444
BstSFI	CTRYAG	2 cut(s)	96, 540
BsuRI	GGCC	4 cut(s)	186, 192, 268, 444
BtgI	CCRYGG	1 cut(s)	408
BtsIMutI	CAGTG	1 cut(s)	528
Cac8I	GCNNGC	1 cut(s)	246
CseI	GACGC	1 cut(s)	402
Csp6I	GTAC	2 cut(s)	43, 550
CviAII	CATG	2 cut(s)	257, 367
CviQI	GTAC	2 cut(s)	43, 550
DpnI	GATC	1 cut(s)	30
DpnII	GATC	1 cut(s)	28
EaeI	YGGCCR	1 cut(s)	442
Eco130I	CCWWGG	1 cut(s)	187
EcoT14I	CCWWGG	1 cut(s)	187
ErhI	CCWWGG	1 cut(s)	187
FaeI	CATG	2 cut(s)	260, 370
FaiI	YATR	8 cut(s)	159, 258, 285, 332, 354, 368, 441, 510
FatI	CATG	2 cut(s)	256, 366
FspBI	CTAG	2 cut(s)	372, 395
HaeIII	GGCC	4 cut(s)	186, 192, 268, 444
HapII	CCGG	1 cut(s)	445
HgaI	GACGC	1 cut(s)	402
Hin1I	GRCGYC	1 cut(s)	413
Hin1II	CATG	2 cut(s)	260, 370
HindIII	AAGCTT	2 cut(s)	242, 348
HinfI	GANTC	6 cut(s)	21, 79, 135, 170, 210, 262
HpaII	CCGG	1 cut(s)	445
HphI	GGTGA	3 cut(s)	132, 268, 431
Hpy166II	GTNNAC	2 cut(s)	384, 552
Hpy188I	TCNGA	4 cut(s)	84, 134, 175, 570
Hpy188III	TCNNGA	4 cut(s)	10, 76, 149, 515
Hpy8I	GTNNAC	2 cut(s)	384, 552
HpyAV	CCTTC	2 cut(s)	227, 350
HpyCH4III	ACNGT	1 cut(s)	65
HpyCH4V	TGCA	3 cut(s)	59, 69, 197
HpyF10VI	GCNNNNNNNGC	1 cut(s)	113
Hsp92I	GRCGYC	1 cut(s)	413
Hsp92II	CATG	2 cut(s)	260, 370
Kzo9I	GATC	1 cut(s)	28
LmnI	GCTCC	1 cut(s)	499
LpnPI	CCDG	6 cut(s)	23, 156, 402, 458, 477, 552
LweI	GCATC	2 cut(s)	151, 412
MaeI	CTAG	2 cut(s)	372, 395
MaeIII	GTNAC	2 cut(s)	51, 259
MalI	GATC	1 cut(s)	30
MboI	GATC	1 cut(s)	28
MluCI	AATT	2 cut(s)	71, 326
MlyI	GAGTC	3 cut(s)	164, 204, 256
MmeI	TCCRAC	1 cut(s)	198
MnlI	CCTC	5 cut(s)	41, 279, 304, 327, 371
MseI	TTAA	2 cut(s)	476, 483
MspI	CCGG	1 cut(s)	445
MspR9I	CCNGG	1 cut(s)	446
Mva1269I	GAATGC	1 cut(s)	496
MwoI	GCNNNNNNNGC	1 cut(s)	113
NciI	CCSGG	1 cut(s)	446
NdeII	GATC	1 cut(s)	28
NlaIII	CATG	2 cut(s)	260, 370
NlaIV	GGNNCC	1 cut(s)	294
NmeAIII	GCCGAG	1 cut(s)	244
NmuCI	GTSAC	2 cut(s)	51, 259
PctI	GAATGC	1 cut(s)	496
PfeI	GAWTC	3 cut(s)	21, 79, 135
Ple19I	CGATCG	1 cut(s)	31
PleI	GAGTC	3 cut(s)	164, 204, 256
PpsI	GAGTC	3 cut(s)	164, 204, 256
PspN4I	GGNNCC	1 cut(s)	294
PvuI	CGATCG	1 cut(s)	31
RsaI	GTAC	2 cut(s)	44, 551
RsaNI	GTAC	2 cut(s)	43, 550
SaqAI	TTAA	2 cut(s)	476, 483
Sau3AI	GATC	1 cut(s)	28
SchI	GAGTC	3 cut(s)	164, 204, 256
ScrFI	CCNGG	1 cut(s)	446
SetI	ASST	8 cut(s)	97, 148, 246, 325, 352, 396, 482, 489
SfaNI	GCATC	2 cut(s)	151, 412
SfcI	CTRYAG	2 cut(s)	96, 540
Sse9I	AATT	2 cut(s)	71, 326
SspMI	CTAG	2 cut(s)	372, 395
StyD4I	CCNGG	1 cut(s)	444
StyI	CCWWGG	1 cut(s)	187
TaaI	ACNGT	1 cut(s)	65
TaqI	TCGA	1 cut(s)	31
TaqII	GACCGA	1 cut(s)	314
TasI	AATT	2 cut(s)	71, 326
TfiI	GAWTC	3 cut(s)	21, 79, 135
Tru1I	TTAA	2 cut(s)	476, 483
Tru9I	TTAA	2 cut(s)	476, 483
TscAI	CASTG	1 cut(s)	535
TseFI	GTSAC	2 cut(s)	51, 259
Tsp45I	GTSAC	2 cut(s)	51, 259
TspDTI	ATGAA	2 cut(s)	355, 369
TspGWI	ACGGA	1 cut(s)	60
TspRI	CASTG	1 cut(s)	535
XapI	RAATTY	1 cut(s)	71
XcmI	CCANNNNNNNNNTGG	1 cut(s)	286
XspI	CTAG	2 cut(s)	372, 395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.