Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000870

Physical Location & Seq

Genomic Coordinates Forward (+)

53722574 .. 53722845

Gene Structure 272 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20633

Sequence Viewer

CDS Protein Promoter (2k)

Length: 168 bp

ATGCAGTATTCAGATACTCCTGGTATATGGACAAGGGAGCAAGTTGAAGCATGGAAACCCATTGTCAATGCTGTACATGCTAAAGGGGGTGTCTTCTTTTGTCAGATTTGGCATGTGGGGAGGGTTTCAAATAGTGGTGCGTTCCTGACTTATACCTTTTTGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

55

Amino Acids

6.25

Weight (kDa)

7.96

Isoelectric Point (pI)

0.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_FMN	PF00724	3 - 44	4e-10	NADH:flavin oxidoreductase / NADH oxidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06050 AT2G06050 AT2G06050
fragaria_vesca	FvH4_1g08451 FvH4_1g08452 FvH4_1g08453 FvH4_1g08454 FvH4_1g08510 FvH4_1g08510 FvH4_1g08510 FvH4_1g08510
malus_domestica	MD00G1142600.v1.1 MD02G1089100.v1.1 MD12G1067300.v1.1 MD15G1216200.v1.1
prunus_persica	Prupe.7G200800_v2.0.a1
pyrus_communis	pycom02g07130 pycom15g19180
rosa_chinensis	RchiOBHm_Chr2g0094561 RchiOBHm_Chr2g0094611 RchiOBHm_Chr2g0094631 RchiOBHm_Chr2g0094641 RchiOBHm_Chr2g0150041 RchiOBHm_Chr7g0211621 RchiOBHm_Chr7g0230281
rosa_laevigata	RLG00000002990 RLG00000016504 RLG00000016506 RLG00000016507 RLG00000020462
rosa_multiflora	Rmu_co8133296.1_g000001 Rmu_co8390375.1_g000001 Rmu_sc0003760.1_g000017 Rmu_sc0004232.1_g000012 Rmu_sc0004359.1_g000033 Rmu_sc0004359.1_g000036 Rmu_sc0006422.1_g000001 Rmu_sc0009445.1_g000018 Rmu_sc0017068.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097490 Rroxscaffold_2G00147030 Rroxscaffold_2G00147040 Rroxscaffold_2G00147050 Rroxscaffold_3G00247670
rosa_rugosa	Rorug02G0045400 Rorug02G0045400 Rorug02G0045600 Rorug02G0045700 Rorug02G0418000 Rorug07G0126300
rosa_samantha	Rh2AG093100 Rh2BG093400 Rh2BG093700 Rh2BG489500 Rh2CG095800 Rh2CG096000 Rh2DG092200 Rh2DG092400 Rh7AG259000 Rh7BG253300 Rh7CG276100 Rh7DG266600
rosa_wichuraiana	Rw0G003550 Rw0G003560 Rw2G038940 Rw7G022140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	75
AgsI	TTSAA	2 cut(s)	47, 129
AjnI	CCWGG	1 cut(s)	19
BbsI	GAAGAC	1 cut(s)	85
BciT130I	CCWGG	1 cut(s)	21
Bme1390I	CCNGG	1 cut(s)	21
BmrFI	CCNGG	1 cut(s)	21
BpiI	GAAGAC	1 cut(s)	85
BseBI	CCWGG	1 cut(s)	21
Bsp1407I	TGTACA	1 cut(s)	73
BsrGI	TGTACA	1 cut(s)	73
Bst2UI	CCWGG	1 cut(s)	21
BstAUI	TGTACA	1 cut(s)	73
BstMWI	GCNNNNNNNGC	1 cut(s)	77
BstNI	CCWGG	1 cut(s)	21
BstNSI	RCATGY	2 cut(s)	80, 116
BstSCI	CCNGG	1 cut(s)	19
BstV2I	GAAGAC	1 cut(s)	85
Csp6I	GTAC	1 cut(s)	74
CviAII	CATG	3 cut(s)	51, 77, 113
CviQI	GTAC	1 cut(s)	74
EcoRII	CCWGG	1 cut(s)	19
FaeI	CATG	3 cut(s)	54, 80, 116
FaiI	YATR	6 cut(s)	26, 28, 52, 78, 114, 153
FatI	CATG	3 cut(s)	50, 76, 112
Hin1II	CATG	3 cut(s)	54, 80, 116
Hpy188I	TCNGA	2 cut(s)	13, 105
Hpy188III	TCNNGA	1 cut(s)	145
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	77
Hsp92II	CATG	3 cut(s)	54, 80, 116
LmnI	GCTCC	1 cut(s)	37
LpnPI	CCDG	3 cut(s)	6, 33, 158
MboII	GAAGA	1 cut(s)	85
MnlI	CCTC	1 cut(s)	114
MspR9I	CCNGG	1 cut(s)	21
MvaI	CCWGG	1 cut(s)	21
MwoI	GCNNNNNNNGC	1 cut(s)	77
NlaIII	CATG	3 cut(s)	54, 80, 116
NspI	RCATGY	2 cut(s)	80, 116
Psp6I	CCWGG	1 cut(s)	19
PspGI	CCWGG	1 cut(s)	19
RsaI	GTAC	1 cut(s)	75
RsaNI	GTAC	1 cut(s)	74
ScrFI	CCNGG	1 cut(s)	21
SetI	ASST	1 cut(s)	158
SgeI	CNNG	8 cut(s)	32, 33, 45, 53, 63, 89, 125, 157
StyD4I	CCNGG	1 cut(s)	19
TatI	WGTACW	1 cut(s)	73
XceI	RCATGY	2 cut(s)	80, 116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.