FvH4_1g08454

12-oxophytodienoate reductase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Forward (+)
4498083 .. 4499877
1795 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g08454.t1

Sequence Viewer

Length: 1164 bp
ATGGCAGATCCTTCATCCACGGGTGGACTCACTCTGTTCTCTCCTTACAAGATGGGCAAGTTCAACCTCTCTCATAGAGTGGTGCTTGCGCCAATGACGAGGAATCGAGCGTTGAACGAACTTCCGCAGCCGGCGATGGTCGAGTACTATTCTCAGAGGTCAACCCCCGGTGGCTTTCTAATCTCTGAAGGCACTTCGCCATCAGACCAAAGCTTCGGGTTTCCACATGTTCCTGGGATTTACACCGATGAACAAGTTGAGGCATGGAAGAAGGTGGCTGATGCTGTTCATGCCAAAGGTGCCATCATTTTCTGTCAACTTTGGCATGTAGGTCGTGCTTCTCATCAAGTTTTTCAACCAGGTGGGAGGTCGCCAATTTCTTCAACCAGCAATCCCATCTCAAAGAAGTGGAAAGTTGCGTTGCCTGATGGGTCTCATGACGTTCACTCTGAACCTCGACGCCTCGAGACCCAAGAAATACCCCAGATTGTTGAGCAGTACCGTCAGGCTGCCTTGAATGCCATTCGAGCAGGTTTTGATGGAGTTGAGATCCATTCGGCACATGGCTACCTCATCGATCAATTCTTGAAAGATGGGGTCAATGATCGAACTGACGAGTACGGTGGCTCGCTTGCAAACCGCTGCAAGTTCTTGATACAAACTGTTGAAGCAGTAGTTGAATCCCTTGGTGCTGATAGAGTTGCCGTCAGAATCTCACCAGCTATTGATTTCTATGATGCTACAGACTCCGACCCGATTGGCCTAGGCTTGGCAGTGATTGAAAGACTCAACAAGCTTCAACATAACATAGGCTCAAAGCTCGCTTATCTTCATGTGACTCAGCCTCGATTGACCACCATTATGACGCTGGCGCCGGCAGAGCTTGATGAAGACAGAGAAGCTCAATTTATGAGGACTTTGCGGGAAGCTTATGAAGGGGCGTTCATGGCTAGTGGAGGGTTTACTAGGGAGCTAGGAATGGAAACTGTGTCTTCTGGTGATGCCGATTTAGTGTCATATGGCCGGGATTTTATCTCAAACCCTGACTTGGTGTTGAGGTTTAGGCTGAATGCTCCCTTGAACAAGTATAATAGGGAGACTTTCTACACCCATGACCCTGTAGTTGGGTACACAGACTACCCTTTTCTAAACATAGAAAGTTGA

Protein Analysis

388

Amino Acids

42.9

Weight (kDa)

5.66

Isoelectric Point (pI)

42.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Oxidored_FMN PF00724 12 - 359 8.8e-86 NADH:flavin oxidoreductase / NADH oxidase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 521
AccB1I GGYRCC 2 cut(s) 299, 871
AciI CCGC 3 cut(s) 125, 640, 922
AclWI GGATC 2 cut(s) 2, 544
AcoI YGGCCR 1 cut(s) 1021
AcuI CTGAAG 1 cut(s) 207
AcyI GRCGYC 2 cut(s) 460, 872
AfaI GTAC 4 cut(s) 146, 500, 620, 1130
AfiI CCNNNNNNNGG 3 cut(s) 769, 1048, 1124
AflIII ACRYGT 1 cut(s) 226
AjnI CCWGG 2 cut(s) 232, 358
AluBI AGCT 8 cut(s) 213, 722, 796, 820, 883, 902, 929, 973
AluI AGCT 8 cut(s) 213, 722, 796, 820, 883, 902, 929, 973
Alw26I GTCTC 3 cut(s) 438, 461, 1091
AlwI GGATC 2 cut(s) 2, 544
Ama87I CYCGRG 1 cut(s) 464
AoxI GGCC 2 cut(s) 760, 1021
ApeKI GCWGC 3 cut(s) 127, 509, 642
ArsI GACNNNNNNTTYG 2 cut(s) 197, 229
AspA2I CCTAGG 1 cut(s) 763
AspLEI GCGC 2 cut(s) 91, 874
AsuC2I CCSGG 2 cut(s) 168, 1025
AsuHPI GGTGA 2 cut(s) 708, 1010
AvaI CYCGRG 1 cut(s) 464
AvrII CCTAGG 1 cut(s) 763
BanI GGYRCC 2 cut(s) 299, 871
BbsI GAAGAC 2 cut(s) 897, 984
BbvI GCAGC 3 cut(s) 139, 496, 629
BccI CCATC 8 cut(s) 46, 130, 208, 311, 404, 422, 533, 587
BceAI ACGGC 1 cut(s) 689
BcgI CGANNNNNNTGC 2 cut(s) 314, 348
BciT130I CCWGG 2 cut(s) 234, 360
BcnI CCSGG 2 cut(s) 168, 1025
BcoDI GTCTC 3 cut(s) 438, 461, 1091
BfaI CTAG 4 cut(s) 764, 951, 966, 974
BfmI CTRYAG 2 cut(s) 741, 1119
BfoI RGCGCY 1 cut(s) 875
BfuAI ACCTGC 1 cut(s) 521
BisI GCNGC 3 cut(s) 128, 510, 643
BlnI CCTAGG 1 cut(s) 763
BlsI GCNGC 3 cut(s) 129, 511, 644
BmcAI AGTACT 1 cut(s) 146
Bme1390I CCNGG 4 cut(s) 168, 234, 360, 1025
BmeT110I CYCGRG 1 cut(s) 464
BmiI GGNNCC 2 cut(s) 301, 873
BmrFI CCNGG 4 cut(s) 168, 234, 360, 1025
BmsI GCATC 3 cut(s) 271, 727, 991
BpiI GAAGAC 2 cut(s) 897, 984
BpuMI CCSGG 2 cut(s) 168, 1025
Bsa29I ATCGAT 1 cut(s) 576
BsaHI GRCGYC 2 cut(s) 460, 872
BsaI GGTCTC 2 cut(s) 438, 461
BsaJI CCNNGG 5 cut(s) 18, 166, 233, 685, 763
Bsc4I CCNNNNNNNGG 3 cut(s) 769, 1048, 1124
Bse118I RCCGGY 2 cut(s) 130, 874
BseBI CCWGG 2 cut(s) 234, 360
BseCI ATCGAT 1 cut(s) 576
BseDI CCNNGG 5 cut(s) 18, 166, 233, 685, 763
BseGI GGATG 1 cut(s) 14
BseLI CCNNNNNNNGG 3 cut(s) 769, 1048, 1124
BseMII CTCAG 2 cut(s) 167, 854
BseXI GCAGC 3 cut(s) 139, 496, 629
BshFI GGCC 2 cut(s) 762, 1023
BshNI GGYRCC 2 cut(s) 299, 871
BshVI ATCGAT 1 cut(s) 576
BsiHKCI CYCGRG 1 cut(s) 464
BsiSI CCGG 4 cut(s) 131, 168, 875, 1024
BslI CCNNNNNNNGG 3 cut(s) 769, 1048, 1124
BsmAI GTCTC 3 cut(s) 438, 461, 1091
BsmI GAATGC 2 cut(s) 523, 1075
BsnI GGCC 2 cut(s) 762, 1023
Bso31I GGTCTC 2 cut(s) 438, 461
BsoBI CYCGRG 1 cut(s) 464
Bsp143I GATC 4 cut(s) 7, 549, 577, 604
BspACI CCGC 3 cut(s) 125, 640, 922
BspANI GGCC 2 cut(s) 762, 1023
BspCNI CTCAG 2 cut(s) 166, 853
BspDI ATCGAT 1 cut(s) 576
BspHI TCATGA 1 cut(s) 436
BspLI GGNNCC 2 cut(s) 301, 873
BspMI ACCTGC 1 cut(s) 521
BspPI GGATC 2 cut(s) 2, 544
BspT107I GGYRCC 2 cut(s) 299, 871
BspTNI GGTCTC 2 cut(s) 438, 461
BsrFI RCCGGY 2 cut(s) 130, 874
BssAI RCCGGY 2 cut(s) 130, 874
BssECI CCNNGG 5 cut(s) 18, 166, 233, 685, 763
BssMI GATC 4 cut(s) 7, 549, 577, 604
BssNI GRCGYC 2 cut(s) 460, 872
BssT1I CCWWGG 2 cut(s) 685, 763
Bst2UI CCWGG 2 cut(s) 234, 360
Bst4CI ACNGT 4 cut(s) 503, 623, 664, 988
BstACI GRCGYC 2 cut(s) 460, 872
BstC8I GCNNGC 7 cut(s) 87, 132, 629, 633, 822, 870, 876
BstDEI CTNAG 2 cut(s) 153, 840
BstDSI CCRYGG 1 cut(s) 18
BstF5I GGATG 1 cut(s) 14
BstH2I RGCGCY 1 cut(s) 875
BstHHI GCGC 2 cut(s) 91, 874
BstKTI GATC 4 cut(s) 10, 552, 580, 607
BstMAI GTCTC 3 cut(s) 438, 461, 1091
BstMBI GATC 4 cut(s) 7, 549, 577, 604
BstMWI GCNNNNNNNGC 6 cut(s) 290, 299, 518, 527, 880, 947
BstNI CCWGG 2 cut(s) 234, 360
BstNSI RCATGY 2 cut(s) 230, 329
BstSCI CCNGG 4 cut(s) 166, 232, 358, 1023
BstSFI CTRYAG 2 cut(s) 741, 1119
BstV1I GCAGC 3 cut(s) 139, 496, 629
BstV2I GAAGAC 2 cut(s) 897, 984
BstX2I RGATCY 2 cut(s) 7, 549
BstYI RGATCY 2 cut(s) 7, 549
Bsu15I ATCGAT 1 cut(s) 576
BsuRI GGCC 2 cut(s) 762, 1023
BsuTUI ATCGAT 1 cut(s) 576
BtgI CCRYGG 1 cut(s) 18
BtgZI GCGATG 1 cut(s) 149
BtsCI GGATG 1 cut(s) 14
BtsI GCAGTG 1 cut(s) 780
BtsIMutI CAGTG 1 cut(s) 780
BveI ACCTGC 1 cut(s) 521
Cac8I GCNNGC 7 cut(s) 87, 132, 629, 633, 822, 870, 876
CciI TCATGA 1 cut(s) 436
CfoI GCGC 2 cut(s) 91, 874
Cfr10I RCCGGY 2 cut(s) 130, 874
ClaI ATCGAT 1 cut(s) 576
CseI GACGC 2 cut(s) 468, 874
CsiI ACCWGGT 1 cut(s) 358
Csp6I GTAC 4 cut(s) 145, 499, 619, 1129
CviAII CATG 9 cut(s) 227, 264, 290, 326, 437, 563, 833, 946, 1112
CviQI GTAC 4 cut(s) 145, 499, 619, 1129
DdeI CTNAG 2 cut(s) 153, 840
DinI GGCGCC 1 cut(s) 873
DpnI GATC 4 cut(s) 9, 551, 579, 606
DpnII GATC 4 cut(s) 7, 549, 577, 604
EaeI YGGCCR 1 cut(s) 1021
Eco130I CCWWGG 2 cut(s) 685, 763
Eco31I GGTCTC 2 cut(s) 438, 461
Eco57I CTGAAG 1 cut(s) 207
Eco88I CYCGRG 1 cut(s) 464
EcoRII CCWGG 2 cut(s) 232, 358
EcoT14I CCWWGG 2 cut(s) 685, 763
EgeI GGCGCC 1 cut(s) 873
EheI GGCGCC 1 cut(s) 873
ErhI CCWWGG 2 cut(s) 685, 763
FaeI CATG 9 cut(s) 230, 267, 293, 329, 440, 566, 836, 949, 1115
FatI CATG 9 cut(s) 226, 263, 289, 325, 436, 562, 832, 945, 1111
FauI CCCGC 1 cut(s) 915
FauNDI CATATG 1 cut(s) 1018
Fnu4HI GCNGC 3 cut(s) 128, 510, 643
Fsp4HI GCNGC 3 cut(s) 128, 510, 643
FspBI CTAG 4 cut(s) 764, 951, 966, 974
GlaI GCGC 2 cut(s) 90, 873
GluI GCNGC 3 cut(s) 128, 510, 643
HaeII RGCGCY 1 cut(s) 875
HaeIII GGCC 2 cut(s) 762, 1023
HapII CCGG 4 cut(s) 131, 168, 875, 1024
HgaI GACGC 2 cut(s) 468, 874
HhaI GCGC 2 cut(s) 91, 874
Hin1I GRCGYC 2 cut(s) 460, 872
Hin1II CATG 9 cut(s) 230, 267, 293, 329, 440, 566, 836, 949, 1115
Hin6I GCGC 2 cut(s) 89, 872
HinP1I GCGC 2 cut(s) 89, 872
HincII GTYRAC 2 cut(s) 162, 317
HindII GTYRAC 2 cut(s) 162, 317
HindIII AAGCTT 3 cut(s) 211, 794, 927
HinfI GANTC 7 cut(s) 27, 103, 680, 711, 746, 786, 838
HpaII CCGG 4 cut(s) 131, 168, 875, 1024
HphI GGTGA 2 cut(s) 708, 1010
Hpy166II GTNNAC 6 cut(s) 26, 162, 317, 445, 963, 1131
Hpy188I TCNGA 6 cut(s) 156, 187, 205, 451, 710, 751
Hpy188III TCNNGA 4 cut(s) 437, 466, 586, 652
Hpy8I GTNNAC 6 cut(s) 26, 162, 317, 445, 963, 1131
Hpy99I CGWCG 1 cut(s) 462
HpyAV CCTTC 4 cut(s) 21, 182, 265, 929
HpyCH4III ACNGT 4 cut(s) 503, 623, 664, 988
HpyCH4IV ACGT 1 cut(s) 441
HpyCH4V TGCA 2 cut(s) 635, 645
HpyF10VI GCNNNNNNNGC 6 cut(s) 290, 299, 518, 527, 880, 947
HpyF3I CTNAG 2 cut(s) 153, 840
HpySE526I ACGT 1 cut(s) 441
Hsp92I GRCGYC 2 cut(s) 460, 872
Hsp92II CATG 9 cut(s) 230, 267, 293, 329, 440, 566, 836, 949, 1115
HspAI GCGC 2 cut(s) 89, 872
KasI GGCGCC 1 cut(s) 871
KroI GCCGGC 2 cut(s) 130, 874
KroNI GCCGGC 2 cut(s) 132, 876
Kzo9I GATC 4 cut(s) 7, 549, 577, 604
LmnI GCTCC 2 cut(s) 970, 1078
Lsp1109I GCAGC 3 cut(s) 139, 496, 629
LweI GCATC 3 cut(s) 271, 727, 991
MabI ACCWGGT 1 cut(s) 358
MaeI CTAG 4 cut(s) 764, 951, 966, 974
MaeII ACGT 1 cut(s) 441
MaeIII GTNAC 1 cut(s) 835
MalI GATC 4 cut(s) 9, 551, 579, 606
MboI GATC 4 cut(s) 7, 549, 577, 604
MboII GAAGA 5 cut(s) 280, 372, 821, 902, 984
MflI RGATCY 2 cut(s) 7, 549
MluCI AATT 3 cut(s) 375, 581, 905
Mly113I GGCGCC 1 cut(s) 872
MlyI GAGTC 4 cut(s) 21, 740, 780, 832
MmeI TCCRAC 1 cut(s) 774
MroNI GCCGGC 2 cut(s) 130, 874
MslI CAYNNNNRTG 1 cut(s) 860
MspA1I CMGCKG 1 cut(s) 642
MspI CCGG 4 cut(s) 131, 168, 875, 1024
MspR9I CCNGG 4 cut(s) 168, 234, 360, 1025
Mva1269I GAATGC 2 cut(s) 523, 1075
MvaI CCWGG 2 cut(s) 234, 360
MwoI GCNNNNNNNGC 6 cut(s) 290, 299, 518, 527, 880, 947
NaeI GCCGGC 2 cut(s) 132, 876
NarI GGCGCC 1 cut(s) 872
NciI CCSGG 2 cut(s) 168, 1025
NdeI CATATG 1 cut(s) 1018
NdeII GATC 4 cut(s) 7, 549, 577, 604
NgoMIV GCCGGC 2 cut(s) 130, 874
NlaIII CATG 9 cut(s) 230, 267, 293, 329, 440, 566, 836, 949, 1115
NlaIV GGNNCC 2 cut(s) 301, 873
NmuCI GTSAC 1 cut(s) 835
NspI RCATGY 2 cut(s) 230, 329
PaeR7I CTCGAG 1 cut(s) 464
PagI TCATGA 1 cut(s) 436
PciI ACATGT 1 cut(s) 226
PctI GAATGC 2 cut(s) 523, 1075
PdiI GCCGGC 2 cut(s) 132, 876
PfeI GAWTC 3 cut(s) 103, 680, 711
PkrI GCNGC 3 cut(s) 129, 511, 644
PleI GAGTC 4 cut(s) 21, 740, 780, 832
PluTI GGCGCC 1 cut(s) 875
PpsI GAGTC 4 cut(s) 21, 740, 780, 832
PscI ACATGT 1 cut(s) 226
Psp6I CCWGG 2 cut(s) 232, 358
PspGI CCWGG 2 cut(s) 232, 358
PspN4I GGNNCC 2 cut(s) 301, 873
PsuI RGATCY 2 cut(s) 7, 549
RsaI GTAC 4 cut(s) 146, 500, 620, 1130
RsaNI GTAC 4 cut(s) 145, 499, 619, 1129
RseI CAYNNNNRTG 1 cut(s) 860
SatI GCNGC 3 cut(s) 128, 510, 643
Sau3AI GATC 4 cut(s) 7, 549, 577, 604
ScaI AGTACT 1 cut(s) 146
SchI GAGTC 4 cut(s) 21, 740, 780, 832
ScrFI CCNGG 4 cut(s) 168, 234, 360, 1025
SexAI ACCWGGT 1 cut(s) 358
SfaNI GCATC 3 cut(s) 271, 727, 991
SfcI CTRYAG 2 cut(s) 741, 1119
SfoI GGCGCC 1 cut(s) 873
Sfr274I CTCGAG 1 cut(s) 464
SlaI CTCGAG 1 cut(s) 464
SmiMI CAYNNNNRTG 1 cut(s) 860
SmlI CTYRAG 1 cut(s) 464
SmoI CTYRAG 1 cut(s) 464
Sse9I AATT 3 cut(s) 375, 581, 905
SsiI CCGC 3 cut(s) 125, 640, 922
SspDI GGCGCC 1 cut(s) 871
SspMI CTAG 4 cut(s) 764, 951, 966, 974
StyD4I CCNGG 4 cut(s) 166, 232, 358, 1023
StyI CCWWGG 2 cut(s) 685, 763
TaaI ACNGT 4 cut(s) 503, 623, 664, 988
TaiI ACGT 1 cut(s) 444
TaqI TCGA 8 cut(s) 106, 141, 457, 465, 526, 576, 607, 847
TasI AATT 3 cut(s) 375, 581, 905
TatI WGTACW 1 cut(s) 144
TfiI GAWTC 3 cut(s) 103, 680, 711
TscAI CASTG 1 cut(s) 780
TseFI GTSAC 1 cut(s) 835
TseI GCWGC 3 cut(s) 127, 509, 642
Tsp45I GTSAC 1 cut(s) 835
TspDTI ATGAA 6 cut(s) 264, 278, 821, 903, 934, 948
TspRI CASTG 1 cut(s) 780
XceI RCATGY 2 cut(s) 230, 329
XcmI CCANNNNNNNNNTGG 2 cut(s) 560, 865
XhoI CTCGAG 1 cut(s) 464
XmaJI CCTAGG 1 cut(s) 763
XspI CTAG 4 cut(s) 764, 951, 966, 974
ZrmI AGTACT 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.