Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000870

Physical Location & Seq

Genomic Coordinates Forward (+)

3572001 .. 3573828

Gene Structure 1828 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0045400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGAGAAGATGGAGAACTCTATACCCTGTTCAGGGAAGCAAGATGATTCAGAAGGCGAGTCCAAGGACATTGTGACCTTTGATAAGTCTCTCCAGGAACTAAGAGACTTGAGCTCCCAACTTCATTATGCTGCTGACTACTGTGAATCAACCTTCTTGGCTGCCCAAGAAAAGAGAGCTGTGGTGGAAAACACAAAAGAGTATATATGCAGAGCTGTGATTACTGTTGTTGATCATCTAGGATGCGTTTCTGCTAACCTTAATGGTCTCATTTCCGAGACTAACGAATTTTCAGACGCCGAGCTGCGAATCAATTGCCTCAAACAAAGAATTCTCCTATGTGAACAATTCACCCACAAGCTTGCTCTTACAAGAACTAGATGGCGTGAGACGTTGCCGAGGCATAGCGCGCGTTTCTTATGTGCACCTATCTCTAGAGATGATGAGAAATCAAATGAAGATATAAGGGACTCTGGAAAGCTGGTCTTTCGGAAAACTATTGACAGGCATGAATTTGACAGAGAGGAAGCAATGCCACTTTTCTTGTACACTTACTCACACAAACCGTCTTTGTCCAAGGATAATGCTAATTCAGCTTTAGTGCCTGTTCGTGATGGTCTATCAATCCTTTCCAAAAGTCCAAATCCCGCATTTCATTTCCAGCAAACTCGGAAGAATGGACGCAGTACCAGGAGATCTGGGCAGGGTAGTGACTTTTTTTCACTCATGCGACGAGCTAAACGAGCAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009605 GO:0009607 GO:0009620 GO:0009694 GO:0009695 GO:0009791 GO:0009908 GO:0009987 GO:0010035 GO:0010193 GO:0010817 GO:0016053 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0019752 GO:0022414 GO:0031407 GO:0031408 GO:0032501 GO:0032502 GO:0032787 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042579 GO:0042802 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046677 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0055114 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0090567 GO:0099402 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

250

Amino Acids

28.61

Weight (kDa)

8.44

Isoelectric Point (pI)

50.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06050 AT2G06050 AT2G06050
fragaria_vesca	FvH4_1g08451 FvH4_1g08452 FvH4_1g08453 FvH4_1g08454 FvH4_1g08510 FvH4_1g08510 FvH4_1g08510 FvH4_1g08510
malus_domestica	MD00G1142600.v1.1 MD02G1089100.v1.1 MD12G1067300.v1.1 MD15G1216200.v1.1
prunus_persica	Prupe.7G200800_v2.0.a1
pyrus_communis	pycom02g07130 pycom15g19180
rosa_chinensis	RchiOBHm_Chr2g0094561 RchiOBHm_Chr2g0094611 RchiOBHm_Chr2g0094631 RchiOBHm_Chr2g0094641 RchiOBHm_Chr2g0150041 RchiOBHm_Chr7g0211621 RchiOBHm_Chr7g0230281
rosa_laevigata	RLG00000002990 RLG00000016504 RLG00000016506 RLG00000016507 RLG00000020462
rosa_multiflora	Rmu_co8133296.1_g000001 Rmu_co8390375.1_g000001 Rmu_sc0003760.1_g000017 Rmu_sc0004232.1_g000012 Rmu_sc0004359.1_g000033 Rmu_sc0004359.1_g000036 Rmu_sc0006422.1_g000001 Rmu_sc0009445.1_g000018 Rmu_sc0017068.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097490 Rroxscaffold_2G00147030 Rroxscaffold_2G00147040 Rroxscaffold_2G00147050 Rroxscaffold_3G00247670
rosa_rugosa	Rorug02G0045400 Rorug02G0045400 Rorug02G0045600 Rorug02G0045700 Rorug02G0418000 Rorug07G0126300
rosa_samantha	Rh2AG093100 Rh2BG093400 Rh2BG093700 Rh2BG489500 Rh2CG095800 Rh2CG096000 Rh2DG092200 Rh2DG092400 Rh7AG259000 Rh7BG253300 Rh7CG276100 Rh7DG266600
rosa_wichuraiana	Rw0G003550 Rw0G003560 Rw2G038940 Rw7G022140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	410, 412
AciI	CCGC	1 cut(s)	648
AcsI	RAATTY	3 cut(s)	287, 330, 512
AcyI	GRCGYC	1 cut(s)	297
AfaI	GTAC	2 cut(s)	548, 688
AfiI	CCNNNNNNNGG	2 cut(s)	32, 33
AjnI	CCWGG	2 cut(s)	93, 689
AluBI	AGCT	8 cut(s)	114, 179, 215, 304, 361, 481, 596, 737
AluI	AGCT	8 cut(s)	114, 179, 215, 304, 361, 481, 596, 737
Alw21I	GWGCWC	2 cut(s)	116, 427
Alw26I	GTCTC	5 cut(s)	93, 99, 272, 272, 383
Alw44I	GTGCAC	1 cut(s)	423
ApaLI	GTGCAC	1 cut(s)	423
ApeKI	GCWGC	3 cut(s)	131, 161, 304
ApoI	RAATTY	3 cut(s)	287, 330, 512
AspLEI	GCGC	2 cut(s)	410, 412
AsuHPI	GGTGA	1 cut(s)	343
BaeGI	GKGCMC	1 cut(s)	427
BanII	GRGCYC	1 cut(s)	116
Bbv12I	GWGCWC	2 cut(s)	116, 427
BbvI	GCAGC	3 cut(s)	118, 148, 291
BccI	CCATC	3 cut(s)	4, 375, 608
BcgI	CGANNNNNNTGC	2 cut(s)	297, 331
BciT130I	CCWGG	2 cut(s)	95, 691
BclI	TGATCA	1 cut(s)	232
BcoDI	GTCTC	5 cut(s)	93, 99, 272, 272, 383
BfaI	CTAG	3 cut(s)	239, 378, 435
BglII	AGATCT	1 cut(s)	695
BisI	GCNGC	3 cut(s)	132, 162, 305
BlsI	GCNGC	3 cut(s)	133, 163, 306
Bme1390I	CCNGG	2 cut(s)	95, 691
BmrFI	CCNGG	2 cut(s)	95, 691
BmsI	GCATC	1 cut(s)	233
BpmI	CTGGAG	1 cut(s)	77
BpuEI	CTTGAG	1 cut(s)	130
BsaHI	GRCGYC	1 cut(s)	297
BsaI	GGTCTC	1 cut(s)	272
BsaJI	CCNNGG	3 cut(s)	63, 398, 576
BsaXI	ACNNNNNCTCC	2 cut(s)	98, 128
Bsc4I	CCNNNNNNNGG	2 cut(s)	32, 33
Bse3DI	GCAATG	2 cut(s)	537, 753
BseBI	CCWGG	2 cut(s)	95, 691
BseDI	CCNNGG	3 cut(s)	63, 398, 576
BseGI	GGATG	1 cut(s)	248
BseLI	CCNNNNNNNGG	2 cut(s)	32, 33
BseMI	GCAATG	2 cut(s)	537, 753
BsePI	GCGCGC	1 cut(s)	408
BseSI	GKGCMC	1 cut(s)	427
BseXI	GCAGC	3 cut(s)	118, 148, 291
Bsh1236I	CGCG	2 cut(s)	410, 412
BsiHKAI	GWGCWC	2 cut(s)	116, 427
BslFI	GGGAC	1 cut(s)	482
BslI	CCNNNNNNNGG	2 cut(s)	32, 33
BsmAI	GTCTC	5 cut(s)	93, 99, 272, 272, 383
BsmBI	CGTCTC	1 cut(s)	383
BsmFI	GGGAC	1 cut(s)	482
Bso31I	GGTCTC	1 cut(s)	272
Bsp1286I	GDGCHC	2 cut(s)	116, 427
Bsp1407I	TGTACA	1 cut(s)	546
Bsp143I	GATC	2 cut(s)	232, 695
BspACI	CCGC	1 cut(s)	648
BspFNI	CGCG	2 cut(s)	410, 412
BspTNI	GGTCTC	1 cut(s)	272
BsrDI	GCAATG	2 cut(s)	537, 753
BsrGI	TGTACA	1 cut(s)	546
BssECI	CCNNGG	3 cut(s)	63, 398, 576
BssHII	GCGCGC	1 cut(s)	408
BssMI	GATC	2 cut(s)	232, 695
BssNI	GRCGYC	1 cut(s)	297
BssT1I	CCWWGG	2 cut(s)	63, 576
Bst2UI	CCWGG	2 cut(s)	95, 691
Bst4CI	ACNGT	3 cut(s)	143, 226, 567
BstACI	GRCGYC	1 cut(s)	297
BstAUI	TGTACA	1 cut(s)	546
BstC8I	GCNNGC	2 cut(s)	363, 410
BstDEI	CTNAG	1 cut(s)	101
BstF5I	GGATG	1 cut(s)	248
BstFNI	CGCG	2 cut(s)	410, 412
BstHHI	GCGC	2 cut(s)	410, 412
BstKTI	GATC	2 cut(s)	235, 698
BstMAI	GTCTC	5 cut(s)	93, 99, 272, 272, 383
BstMBI	GATC	2 cut(s)	232, 695
BstMWI	GCNNNNNNNGC	3 cut(s)	409, 593, 743
BstNI	CCWGG	2 cut(s)	95, 691
BstSCI	CCNGG	2 cut(s)	93, 689
BstSLI	GKGCMC	1 cut(s)	427
BstUI	CGCG	2 cut(s)	410, 412
BstV1I	GCAGC	3 cut(s)	118, 148, 291
BstX2I	RGATCY	1 cut(s)	695
BstYI	RGATCY	1 cut(s)	695
BtsCI	GGATG	1 cut(s)	248
Cac8I	GCNNGC	2 cut(s)	363, 410
CfoI	GCGC	2 cut(s)	410, 412
CseI	GACGC	2 cut(s)	305, 690
Csp6I	GTAC	2 cut(s)	547, 687
CspCI	CAANNNNNGTGG	2 cut(s)	525, 560
CviAII	CATG	2 cut(s)	509, 727
CviJI	RGCY	9 cut(s)	114, 161, 179, 215, 304, 361, 481, 596, 737
CviKI_1	RGCY	9 cut(s)	114, 161, 179, 215, 304, 361, 481, 596, 737
CviQI	GTAC	2 cut(s)	547, 687
DdeI	CTNAG	1 cut(s)	101
DpnI	GATC	2 cut(s)	234, 697
DpnII	GATC	2 cut(s)	232, 695
Ecl136II	GAGCTC	1 cut(s)	114
Eco130I	CCWWGG	2 cut(s)	63, 576
Eco24I	GRGCYC	1 cut(s)	116
Eco31I	GGTCTC	1 cut(s)	272
Eco53kI	GAGCTC	1 cut(s)	114
EcoICRI	GAGCTC	1 cut(s)	114
EcoRI	GAATTC	1 cut(s)	330
EcoRII	CCWGG	2 cut(s)	93, 689
EcoT14I	CCWWGG	2 cut(s)	63, 576
EcoT38I	GRGCYC	1 cut(s)	116
ErhI	CCWWGG	2 cut(s)	63, 576
Esp3I	CGTCTC	1 cut(s)	383
FaeI	CATG	2 cut(s)	512, 730
FalI	AAGNNNNNCTT	2 cut(s)	470, 502
FaqI	GGGAC	1 cut(s)	482
FatI	CATG	2 cut(s)	508, 726
FauI	CCCGC	1 cut(s)	655
FbaI	TGATCA	1 cut(s)	232
Fnu4HI	GCNGC	3 cut(s)	132, 162, 305
FokI	GGATG	1 cut(s)	255
FriOI	GRGCYC	1 cut(s)	116
Fsp4HI	GCNGC	3 cut(s)	132, 162, 305
FspBI	CTAG	3 cut(s)	239, 378, 435
GlaI	GCGC	2 cut(s)	409, 411
GluI	GCNGC	3 cut(s)	132, 162, 305
GsuI	CTGGAG	1 cut(s)	77
HgaI	GACGC	2 cut(s)	305, 690
HhaI	GCGC	2 cut(s)	410, 412
Hin1I	GRCGYC	1 cut(s)	297
Hin1II	CATG	2 cut(s)	512, 730
Hin6I	GCGC	2 cut(s)	408, 410
HinP1I	GCGC	2 cut(s)	408, 410
HindIII	AAGCTT	1 cut(s)	359
HinfI	GANTC	5 cut(s)	47, 59, 146, 309, 470
HphI	GGTGA	1 cut(s)	343
Hpy166II	GTNNAC	3 cut(s)	344, 425, 549
Hpy188I	TCNGA	5 cut(s)	52, 277, 295, 492, 672
Hpy188III	TCNNGA	3 cut(s)	435, 474, 611
Hpy8I	GTNNAC	3 cut(s)	344, 425, 549
Hpy99I	CGWCG	1 cut(s)	735
HpyAV	CCTTC	2 cut(s)	47, 163
HpyCH4III	ACNGT	3 cut(s)	143, 226, 567
HpyCH4IV	ACGT	1 cut(s)	392
HpyCH4V	TGCA	2 cut(s)	210, 425
HpyF10VI	GCNNNNNNNGC	3 cut(s)	409, 593, 743
HpyF3I	CTNAG	1 cut(s)	101
HpySE526I	ACGT	1 cut(s)	392
Hsp92I	GRCGYC	1 cut(s)	297
Hsp92II	CATG	2 cut(s)	512, 730
HspAI	GCGC	2 cut(s)	408, 410
Ksp22I	TGATCA	1 cut(s)	232
Kzo9I	GATC	2 cut(s)	232, 695
LmnI	GCTCC	1 cut(s)	119
Lsp1109I	GCAGC	3 cut(s)	118, 148, 291
LweI	GCATC	1 cut(s)	233
MaeI	CTAG	3 cut(s)	239, 378, 435
MaeII	ACGT	1 cut(s)	392
MaeIII	GTNAC	2 cut(s)	73, 710
MalI	GATC	2 cut(s)	234, 697
MboI	GATC	2 cut(s)	232, 695
MboII	GAAGA	3 cut(s)	19, 470, 685
MfeI	CAATTG	1 cut(s)	313
MflI	RGATCY	1 cut(s)	695
MhlI	GDGCHC	2 cut(s)	116, 427
MluCI	AATT	6 cut(s)	287, 313, 330, 347, 512, 589
MlyI	GAGTC	2 cut(s)	68, 464
MnlI	CCTC	3 cut(s)	329, 393, 517
MseI	TTAA	1 cut(s)	261
MspR9I	CCNGG	2 cut(s)	95, 691
MunI	CAATTG	1 cut(s)	313
MvaI	CCWGG	2 cut(s)	95, 691
MvnI	CGCG	2 cut(s)	410, 412
MwoI	GCNNNNNNNGC	3 cut(s)	409, 593, 743
NdeII	GATC	2 cut(s)	232, 695
NlaIII	CATG	2 cut(s)	512, 730
NmeAIII	GCCGAG	2 cut(s)	325, 423
NmuCI	GTSAC	2 cut(s)	73, 710
PauI	GCGCGC	1 cut(s)	408
PcsI	WCGNNNNNNNCGW	1 cut(s)	739
PfeI	GAWTC	3 cut(s)	47, 146, 309
PfoI	TCCNGGA	1 cut(s)	93
PkrI	GCNGC	3 cut(s)	133, 163, 306
PleI	GAGTC	2 cut(s)	67, 464
PpsI	GAGTC	2 cut(s)	67, 464
Psp124BI	GAGCTC	1 cut(s)	116
Psp6I	CCWGG	2 cut(s)	93, 689
PspGI	CCWGG	2 cut(s)	93, 689
PsuI	RGATCY	1 cut(s)	695
PteI	GCGCGC	1 cut(s)	408
RsaI	GTAC	2 cut(s)	548, 688
RsaNI	GTAC	2 cut(s)	547, 687
SacI	GAGCTC	1 cut(s)	116
SaqAI	TTAA	1 cut(s)	261
SatI	GCNGC	3 cut(s)	132, 162, 305
Sau3AI	GATC	2 cut(s)	232, 695
SchI	GAGTC	2 cut(s)	68, 464
ScrFI	CCNGG	2 cut(s)	95, 691
SduI	GDGCHC	2 cut(s)	116, 427
SfaNI	GCATC	1 cut(s)	233
SmlI	CTYRAG	1 cut(s)	109
SmoI	CTYRAG	1 cut(s)	109
Sse9I	AATT	6 cut(s)	287, 313, 330, 347, 512, 589
SsiI	CCGC	1 cut(s)	648
SspMI	CTAG	3 cut(s)	239, 378, 435
SstI	GAGCTC	1 cut(s)	116
StyD4I	CCNGG	2 cut(s)	93, 689
StyI	CCWWGG	2 cut(s)	63, 576
TaaI	ACNGT	3 cut(s)	143, 226, 567
TaiI	ACGT	1 cut(s)	395
TasI	AATT	6 cut(s)	287, 313, 330, 347, 512, 589
TatI	WGTACW	1 cut(s)	546
TfiI	GAWTC	3 cut(s)	47, 146, 309
Tru1I	TTAA	1 cut(s)	261
Tru9I	TTAA	1 cut(s)	261
TseFI	GTSAC	2 cut(s)	73, 710
TseI	GCWGC	3 cut(s)	131, 161, 304
Tsp45I	GTSAC	2 cut(s)	73, 710
TspDTI	ATGAA	4 cut(s)	113, 471, 525, 644
VneI	GTGCAC	1 cut(s)	423
XapI	RAATTY	3 cut(s)	287, 330, 512
XbaI	TCTAGA	1 cut(s)	434
XspI	CTAG	3 cut(s)	239, 378, 435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.