Rh2DG092200

12-oxophytodienoate reductase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Forward (+)
7170078 .. 7171598
1521 bp
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UTR
Exon/CDS
Intron
Rh2DG092200.1

Sequence Viewer

Length: 234 bp
ATGGGCGATTCTTCATCAAAAGGACTCGCTCTGTTCTCTCCTTACAAGATGGGCAACTCCAATCTCTCTCACAGTTACCAACCTGGCGGGGGCTCGCCTGTCTCTTCAACCAACAATCCCATTTCATATAGATGGAACGTTCCGTTGCCAGATGGTTCTGAGGACACTTATCCTCAGCCTCGACGGCTCGAAACCCACGAAATATCTCAGATTGTTGAGCCCGCGCTGGCTTAA

Protein Analysis

77

Amino Acids

8.32

Weight (kDa)

5.45

Isoelectric Point (pI)

75.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 224
AciI CCGC 2 cut(s) 87, 222
AclI AACGTT 1 cut(s) 138
AfiI CCNNNNNNNGG 1 cut(s) 89
AgsI TTSAA 1 cut(s) 108
AjnI CCWGG 1 cut(s) 82
Alw26I GTCTC 1 cut(s) 106
AspLEI GCGC 1 cut(s) 226
BanII GRGCYC 2 cut(s) 95, 222
BbvCI CCTCAGC 1 cut(s) 174
BccI CCATC 3 cut(s) 43, 126, 146
BceAI ACGGC 1 cut(s) 200
BciT130I CCWGG 1 cut(s) 84
BcoDI GTCTC 1 cut(s) 106
BglI GCCNNNNNGGC 1 cut(s) 184
Bme1390I CCNGG 1 cut(s) 84
BmrFI CCNGG 1 cut(s) 84
Bpu10I CCTNAGC 1 cut(s) 174
Bsc4I CCNNNNNNNGG 1 cut(s) 89
BseBI CCWGG 1 cut(s) 84
BseLI CCNNNNNNNGG 1 cut(s) 89
BseMII CTCAG 3 cut(s) 150, 188, 221
Bsh1236I CGCG 1 cut(s) 224
BslI CCNNNNNNNGG 1 cut(s) 89
BsmAI GTCTC 1 cut(s) 106
Bsp1286I GDGCHC 2 cut(s) 95, 222
BspACI CCGC 2 cut(s) 87, 222
BspCNI CTCAG 3 cut(s) 151, 187, 220
BspFNI CGCG 1 cut(s) 224
Bst2UI CCWGG 1 cut(s) 84
Bst4CI ACNGT 1 cut(s) 74
Bst6I CTCTTC 1 cut(s) 109
BstC8I GCNNGC 3 cut(s) 95, 222, 228
BstDEI CTNAG 3 cut(s) 159, 174, 207
BstFNI CGCG 1 cut(s) 224
BstHHI GCGC 1 cut(s) 226
BstMAI GTCTC 1 cut(s) 106
BstMWI GCNNNNNNNGC 1 cut(s) 184
BstNI CCWGG 1 cut(s) 84
BstSCI CCNGG 1 cut(s) 82
BstUI CGCG 1 cut(s) 224
Cac8I GCNNGC 3 cut(s) 95, 222, 228
CfoI GCGC 1 cut(s) 226
CviJI RGCY 5 cut(s) 93, 178, 187, 220, 230
CviKI_1 RGCY 5 cut(s) 93, 178, 187, 220, 230
DdeI CTNAG 3 cut(s) 159, 174, 207
Eam1104I CTCTTC 1 cut(s) 109
EarI CTCTTC 1 cut(s) 109
Eco24I GRGCYC 2 cut(s) 95, 222
EcoRII CCWGG 1 cut(s) 82
EcoT38I GRGCYC 2 cut(s) 95, 222
FaiI YATR 2 cut(s) 127, 129
FauI CCCGC 2 cut(s) 80, 229
FriOI GRGCYC 2 cut(s) 95, 222
GlaI GCGC 1 cut(s) 225
HhaI GCGC 1 cut(s) 226
Hin6I GCGC 1 cut(s) 224
HinP1I GCGC 1 cut(s) 224
HinfI GANTC 2 cut(s) 8, 24
Hpy188I TCNGA 2 cut(s) 160, 210
Hpy99I CGWCG 1 cut(s) 186
HpyCH4III ACNGT 1 cut(s) 74
HpyCH4IV ACGT 1 cut(s) 138
HpyF10VI GCNNNNNNNGC 1 cut(s) 184
HpyF3I CTNAG 3 cut(s) 159, 174, 207
HpySE526I ACGT 1 cut(s) 138
HspAI GCGC 1 cut(s) 224
LpnPI CCDG 5 cut(s) 69, 96, 111, 162, 212
MaeII ACGT 1 cut(s) 138
MaeIII GTNAC 1 cut(s) 74
MboII GAAGA 2 cut(s) 3, 96
MhlI GDGCHC 2 cut(s) 95, 222
MlyI GAGTC 1 cut(s) 18
MnlI CCTC 3 cut(s) 154, 183, 189
MseI TTAA 1 cut(s) 232
MslI CAYNNNNRTG 1 cut(s) 130
MspR9I CCNGG 1 cut(s) 84
MvaI CCWGG 1 cut(s) 84
MvnI CGCG 1 cut(s) 224
MwoI GCNNNNNNNGC 1 cut(s) 184
PcsI WCGNNNNNNNCGW 1 cut(s) 195
PfeI GAWTC 1 cut(s) 8
PleI GAGTC 1 cut(s) 18
PpsI GAGTC 1 cut(s) 18
Psp1406I AACGTT 1 cut(s) 138
Psp6I CCWGG 1 cut(s) 82
PspGI CCWGG 1 cut(s) 82
RseI CAYNNNNRTG 1 cut(s) 130
SaqAI TTAA 1 cut(s) 232
SchI GAGTC 1 cut(s) 18
ScrFI CCNGG 1 cut(s) 84
SduI GDGCHC 2 cut(s) 95, 222
SetI ASST 2 cut(s) 85, 141
SmiMI CAYNNNNRTG 1 cut(s) 130
SsiI CCGC 2 cut(s) 87, 222
StyD4I CCNGG 1 cut(s) 82
TaaI ACNGT 1 cut(s) 74
TaiI ACGT 1 cut(s) 141
TaqI TCGA 2 cut(s) 181, 189
TfiI GAWTC 1 cut(s) 8
Tru1I TTAA 1 cut(s) 232
Tru9I TTAA 1 cut(s) 232
TspDTI ATGAA 1 cut(s) 114
TspGWI ACGGA 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.