Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000870

Physical Location & Seq

Genomic Coordinates Forward (+)

28330481 .. 28333350

Gene Structure 2870 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG266600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGTTTAGATGGCTTTATTCTTACGTTTACAGGGTGGTGCTTGCGCCATTGACAAGGTGTCGAGCTCCTAACGAAATTCCACAGCCAGCGATGATCGAGTATTATTCTCAGAGGTCAACCCCCGGCGGCCTTCTTATTACTGAAGCCACTTCGCTCTCCGACACGAGTGCTGGGTTTCCACGTGTTCCTGGGATTTACACAGATGAACAAGTTAAGAAATGGACGAAAGTGGTCGACGCTGTTCACGCCAAAGGTGCCATTATTTTCTGTCAACTTTTGCACGTAGGTCGTGCTTCTCATCAAGTGTACCAACCTAGTGGGAGTTCGCCAATTTCTTCAACCAACAATCCCATTTCAAATAGATGGAAAATTCTGTTGCCAGATGGGTCTCAAGAGACTTATGCTCAGCCTGGACGCCTCGAAACCCATGAAATACCTCAGATTGTTGAGCAGTATCGCCACGCTGCCTTAAATGCTATTCGAGCAGTTAAGGAAATGTACGTGGATAAACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009605 GO:0009607 GO:0009620 GO:0009694 GO:0009695 GO:0009791 GO:0009908 GO:0009987 GO:0010035 GO:0010193 GO:0010817 GO:0016053 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0019752 GO:0022414 GO:0031407 GO:0031408 GO:0032501 GO:0032502 GO:0032787 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042579 GO:0042802 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046677 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0055114 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0090567 GO:0099402 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

171

Amino Acids

19.26

Weight (kDa)

9.1

Isoelectric Point (pI)

40.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_FMN	PF00724	11 - 162	2.6e-28	NADH:flavin oxidoreductase / NADH oxidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06050 AT2G06050 AT2G06050
fragaria_vesca	FvH4_1g08451 FvH4_1g08452 FvH4_1g08453 FvH4_1g08454 FvH4_1g08510 FvH4_1g08510 FvH4_1g08510 FvH4_1g08510
malus_domestica	MD00G1142600.v1.1 MD02G1089100.v1.1 MD12G1067300.v1.1 MD15G1216200.v1.1
prunus_persica	Prupe.7G200800_v2.0.a1
pyrus_communis	pycom02g07130 pycom15g19180
rosa_chinensis	RchiOBHm_Chr2g0094561 RchiOBHm_Chr2g0094611 RchiOBHm_Chr2g0094631 RchiOBHm_Chr2g0094641 RchiOBHm_Chr2g0150041 RchiOBHm_Chr7g0211621 RchiOBHm_Chr7g0230281
rosa_laevigata	RLG00000002990 RLG00000016504 RLG00000016506 RLG00000016507 RLG00000020462
rosa_multiflora	Rmu_co8133296.1_g000001 Rmu_co8390375.1_g000001 Rmu_sc0003760.1_g000017 Rmu_sc0004232.1_g000012 Rmu_sc0004359.1_g000033 Rmu_sc0004359.1_g000036 Rmu_sc0006422.1_g000001 Rmu_sc0009445.1_g000018 Rmu_sc0017068.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097490 Rroxscaffold_2G00147030 Rroxscaffold_2G00147040 Rroxscaffold_2G00147050 Rroxscaffold_3G00247670
rosa_rugosa	Rorug02G0045400 Rorug02G0045400 Rorug02G0045600 Rorug02G0045700 Rorug02G0418000 Rorug07G0126300
rosa_samantha	Rh2AG093100 Rh2BG093400 Rh2BG093700 Rh2BG489500 Rh2CG095800 Rh2CG096000 Rh2DG092200 Rh2DG092400 Rh7AG259000 Rh7BG253300 Rh7CG276100 Rh7DG266600
rosa_wichuraiana	Rw0G003550 Rw0G003560 Rw2G038940 Rw7G022140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	254
AccI	GTMKAC	1 cut(s)	234
AciI	CCGC	1 cut(s)	126
AcsI	RAATTY	2 cut(s)	75, 369
AcuI	CTGAAG	1 cut(s)	162
AcvI	CACGTG	1 cut(s)	182
AcyI	GRCGYC	1 cut(s)	415
AfaI	GTAC	2 cut(s)	308, 500
AflIII	ACRYGT	1 cut(s)	181
AgsI	TTSAA	2 cut(s)	339, 357
AhdI	GACNNNNNGTC	1 cut(s)	57
AjnI	CCWGG	2 cut(s)	187, 409
AluBI	AGCT	1 cut(s)	65
AluI	AGCT	1 cut(s)	65
Alw21I	GWGCWC	1 cut(s)	67
Alw26I	GTCTC	2 cut(s)	389, 393
AoxI	GGCC	1 cut(s)	127
ApeKI	GCWGC	1 cut(s)	464
ApoI	RAATTY	2 cut(s)	75, 369
AspLEI	GCGC	1 cut(s)	46
AsuC2I	CCSGG	1 cut(s)	123
BanI	GGYRCC	1 cut(s)	254
BanII	GRGCYC	1 cut(s)	67
BauI	CACGAG	1 cut(s)	163
BbrPI	CACGTG	1 cut(s)	182
Bbv12I	GWGCWC	1 cut(s)	67
BbvI	GCAGC	1 cut(s)	451
BccI	CCATC	3 cut(s)	3, 357, 377
BcgI	CGANNNNNNTGC	4 cut(s)	149, 183, 269, 303
BciT130I	CCWGG	2 cut(s)	189, 411
BcnI	CCSGG	1 cut(s)	123
BcoDI	GTCTC	2 cut(s)	389, 393
BfaI	CTAG	1 cut(s)	315
BisI	GCNGC	2 cut(s)	127, 465
BlpI	GCTNAGC	1 cut(s)	405
BlsI	GCNGC	2 cut(s)	128, 466
Bme1390I	CCNGG	3 cut(s)	123, 189, 411
BmeRI	GACNNNNNGTC	1 cut(s)	57
BmiI	GGNNCC	1 cut(s)	256
BmrFI	CCNGG	3 cut(s)	123, 189, 411
Bpu1102I	GCTNAGC	1 cut(s)	405
BpuEI	CTTGAG	1 cut(s)	375
BpuMI	CCSGG	1 cut(s)	123
BsaAI	YACGTR	3 cut(s)	182, 283, 502
BsaHI	GRCGYC	1 cut(s)	415
BsaI	GGTCTC	1 cut(s)	393
BsaJI	CCNNGG	2 cut(s)	121, 188
BseBI	CCWGG	2 cut(s)	189, 411
BseDI	CCNNGG	2 cut(s)	121, 188
BseMII	CTCAG	3 cut(s)	122, 419, 452
BseXI	GCAGC	1 cut(s)	451
BseYI	CCCAGC	1 cut(s)	170
BshFI	GGCC	1 cut(s)	129
BshNI	GGYRCC	1 cut(s)	254
BsiHKAI	GWGCWC	1 cut(s)	67
BsiSI	CCGG	1 cut(s)	123
BsmAI	GTCTC	2 cut(s)	389, 393
BsnI	GGCC	1 cut(s)	129
Bso31I	GGTCTC	1 cut(s)	393
Bsp1286I	GDGCHC	1 cut(s)	67
Bsp143I	GATC	1 cut(s)	93
Bsp1720I	GCTNAGC	1 cut(s)	405
BspACI	CCGC	1 cut(s)	126
BspANI	GGCC	1 cut(s)	129
BspCNI	CTCAG	3 cut(s)	121, 418, 451
BspLI	GGNNCC	1 cut(s)	256
BspT107I	GGYRCC	1 cut(s)	254
BspTNI	GGTCTC	1 cut(s)	393
BssECI	CCNNGG	2 cut(s)	121, 188
BssMI	GATC	1 cut(s)	93
BssNI	GRCGYC	1 cut(s)	415
BssSI	CACGAG	1 cut(s)	163
Bst2BI	CACGAG	1 cut(s)	163
Bst2UI	CCWGG	2 cut(s)	189, 411
BstACI	GRCGYC	1 cut(s)	415
BstBAI	YACGTR	3 cut(s)	182, 283, 502
BstC8I	GCNNGC	2 cut(s)	42, 87
BstDEI	CTNAG	3 cut(s)	108, 405, 438
BstHHI	GCGC	1 cut(s)	46
BstKTI	GATC	1 cut(s)	96
BstMAI	GTCTC	2 cut(s)	389, 393
BstMBI	GATC	1 cut(s)	93
BstMWI	GCNNNNNNNGC	4 cut(s)	245, 254, 473, 482
BstNI	CCWGG	2 cut(s)	189, 411
BstSCI	CCNGG	3 cut(s)	121, 187, 409
BstV1I	GCAGC	1 cut(s)	451
BstXI	CCANNNNNNTGG	1 cut(s)	317
BsuRI	GGCC	1 cut(s)	129
BtgZI	GCGATG	1 cut(s)	104
Cac8I	GCNNGC	2 cut(s)	42, 87
CfoI	GCGC	1 cut(s)	46
CseI	GACGC	2 cut(s)	245, 423
Csp6I	GTAC	2 cut(s)	307, 499
CviAII	CATG	1 cut(s)	428
CviJI	RGCY	6 cut(s)	13, 65, 85, 129, 146, 409
CviKI_1	RGCY	6 cut(s)	13, 65, 85, 129, 146, 409
CviQI	GTAC	2 cut(s)	307, 499
DdeI	CTNAG	3 cut(s)	108, 405, 438
DpnI	GATC	1 cut(s)	95
DpnII	GATC	1 cut(s)	93
DriI	GACNNNNNGTC	1 cut(s)	57
Eam1105I	GACNNNNNGTC	1 cut(s)	57
Ecl136II	GAGCTC	1 cut(s)	65
Eco24I	GRGCYC	1 cut(s)	67
Eco31I	GGTCTC	1 cut(s)	393
Eco53kI	GAGCTC	1 cut(s)	65
Eco57I	CTGAAG	1 cut(s)	162
Eco72I	CACGTG	1 cut(s)	182
EcoICRI	GAGCTC	1 cut(s)	65
EcoRII	CCWGG	2 cut(s)	187, 409
EcoT38I	GRGCYC	1 cut(s)	67
FaeI	CATG	1 cut(s)	431
FaiI	YATR	3 cut(s)	402, 429, 514
FatI	CATG	1 cut(s)	427
FblI	GTMKAC	1 cut(s)	234
Fnu4HI	GCNGC	2 cut(s)	127, 465
FriOI	GRGCYC	1 cut(s)	67
Fsp4HI	GCNGC	2 cut(s)	127, 465
FspBI	CTAG	1 cut(s)	315
GlaI	GCGC	1 cut(s)	45
GluI	GCNGC	2 cut(s)	127, 465
GsaI	CCCAGC	1 cut(s)	174
HaeIII	GGCC	1 cut(s)	129
HapII	CCGG	1 cut(s)	123
HgaI	GACGC	2 cut(s)	245, 423
HhaI	GCGC	1 cut(s)	46
Hin1I	GRCGYC	1 cut(s)	415
Hin1II	CATG	1 cut(s)	431
Hin6I	GCGC	1 cut(s)	44
HinP1I	GCGC	1 cut(s)	44
HincII	GTYRAC	3 cut(s)	117, 235, 272
HindII	GTYRAC	3 cut(s)	117, 235, 272
HpaII	CCGG	1 cut(s)	123
Hpy166II	GTNNAC	6 cut(s)	28, 117, 235, 244, 272, 307
Hpy188I	TCNGA	3 cut(s)	111, 160, 441
Hpy188III	TCNNGA	1 cut(s)	392
Hpy8I	GTNNAC	6 cut(s)	28, 117, 235, 244, 272, 307
Hpy99I	CGWCG	1 cut(s)	239
HpyAV	CCTTC	1 cut(s)	140
HpyCH4IV	ACGT	4 cut(s)	24, 181, 282, 501
HpyCH4V	TGCA	1 cut(s)	280
HpyF10VI	GCNNNNNNNGC	4 cut(s)	245, 254, 473, 482
HpyF3I	CTNAG	3 cut(s)	108, 405, 438
HpySE526I	ACGT	4 cut(s)	24, 181, 282, 501
Hsp92I	GRCGYC	1 cut(s)	415
Hsp92II	CATG	1 cut(s)	431
HspAI	GCGC	1 cut(s)	44
Kzo9I	GATC	1 cut(s)	93
LmnI	GCTCC	1 cut(s)	70
LpnPI	CCDG	9 cut(s)	16, 99, 136, 156, 174, 201, 393, 396, 423
Lsp1109I	GCAGC	1 cut(s)	451
MaeI	CTAG	1 cut(s)	315
MaeII	ACGT	4 cut(s)	24, 181, 282, 501
MalI	GATC	1 cut(s)	95
MboI	GATC	1 cut(s)	93
MboII	GAAGA	1 cut(s)	327
MhlI	GDGCHC	1 cut(s)	67
MluCI	AATT	3 cut(s)	75, 330, 369
MmeI	TCCRAC	1 cut(s)	183
MnlI	CCTC	3 cut(s)	105, 428, 447
MseI	TTAA	3 cut(s)	213, 470, 489
MspI	CCGG	1 cut(s)	123
MspR9I	CCNGG	3 cut(s)	123, 189, 411
MvaI	CCWGG	2 cut(s)	189, 411
MwoI	GCNNNNNNNGC	4 cut(s)	245, 254, 473, 482
NciI	CCSGG	1 cut(s)	123
NdeII	GATC	1 cut(s)	93
NlaIII	CATG	1 cut(s)	431
NlaIV	GGNNCC	1 cut(s)	256
PkrI	GCNGC	2 cut(s)	128, 466
PmaCI	CACGTG	1 cut(s)	182
PmlI	CACGTG	1 cut(s)	182
Ppu21I	YACGTR	3 cut(s)	182, 283, 502
Psp124BI	GAGCTC	1 cut(s)	67
Psp6I	CCWGG	2 cut(s)	187, 409
PspCI	CACGTG	1 cut(s)	182
PspFI	CCCAGC	1 cut(s)	170
PspGI	CCWGG	2 cut(s)	187, 409
PspN4I	GGNNCC	1 cut(s)	256
RsaI	GTAC	2 cut(s)	308, 500
RsaNI	GTAC	2 cut(s)	307, 499
SacI	GAGCTC	1 cut(s)	67
SalI	GTCGAC	1 cut(s)	233
SaqAI	TTAA	3 cut(s)	213, 470, 489
SatI	GCNGC	2 cut(s)	127, 465
Sau3AI	GATC	1 cut(s)	93
ScrFI	CCNGG	3 cut(s)	123, 189, 411
SduI	GDGCHC	1 cut(s)	67
SmlI	CTYRAG	1 cut(s)	390
SmoI	CTYRAG	1 cut(s)	390
Sse9I	AATT	3 cut(s)	75, 330, 369
SsiI	CCGC	1 cut(s)	126
SspMI	CTAG	1 cut(s)	315
SstI	GAGCTC	1 cut(s)	67
StyD4I	CCNGG	3 cut(s)	121, 187, 409
TaiI	ACGT	4 cut(s)	27, 184, 285, 504
TaqI	TCGA	5 cut(s)	61, 96, 234, 420, 481
TasI	AATT	3 cut(s)	75, 330, 369
TauI	GCSGC	1 cut(s)	129
Tru1I	TTAA	3 cut(s)	213, 470, 489
Tru9I	TTAA	3 cut(s)	213, 470, 489
TseI	GCWGC	1 cut(s)	464
TspDTI	ATGAA	2 cut(s)	219, 444
XapI	RAATTY	2 cut(s)	75, 369
XmiI	GTMKAC	1 cut(s)	234
XspI	CTAG	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.