pycom15g19180

12-oxophytodienoate reductase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
13671362 .. 13673353
1992 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g19180.4

Sequence Viewer

Length: 1101 bp
ATGACGAGATGCCGGGCGTTGAACGGAGTGCCGCAACCGGCGCTGGCTGAGTACTACTCTCAAAGGTCAACTGTCGGCGGCTTTCTCATCAGCGAAGGCACTATAATCTCCGACACTGGCGCCGGGTTTCCGCATGTTCCTGGGATTTACAACGACGAACAGGTGGAGGCATGGAAGAAGGTGGTGGACGTAGTTCACGCCAAAGGCGCCATTATTTTCTGTCAACTTTGGCACGTTGGTCGTTCATCTCATGAAGTTTATCAACCCCGTGGGGGAGCACCAATATCATCAACCAACAATCCCATTTCAAAGAGGTGGAGAATTCTTTTGCCGGATGGCTCTCATGGTCCTTACCCTAAGCCTCGAGCCCTTGAAATCCATGAAATTCCCCAAGTTGTGGAGCAATATCGTCAGGCTGCCTTGAATGCCATTCGTGCAGGTTTCGATGGAATTGAGATTCATGGGGCACATGGCTATCTCATTGACCAATTTTTGAAAGATGGGATCAATGATCGAACGGATGAGTATGGTGGATCGGTTGAAAACCGGTGCAAGTTCTTGATTCAGATAGTTCAAGCAGTGGTTGGAGCAATAGGTGCTGATAGAGTTGGTGTCAGAATTTCACCGGCTATTGATCACATGGATGCCATTGACTCTGATCCACTTATCCTAGGTCTGGCAGTGATTGAAAGGCTCAACAAGCTTCAACAAAACTGGGGCTCAAAACTGACCTATCTTCATGTAACTCAGCCTCGTTACGCAGCTTATGGTCAAGCGGAAGCTGGAAAACCTGGCAGTGATGAAGAGGAAGCTGTGTTTATGAGGACTTTGAGGAAAGCATATCACGGTACATTTATTGCTAGTGGAGGGTTCACTCGAGAGCTTGGAGTGCAAGCTGTGGCTTCTGGGGATGCTGATTTGGTGTCCTACGGTCGCCTTTTTATTTCAAACCCTGATTTGGTCCTGAGATTTAAGCTTAATGCACCCTTGACCAAGTATAACAGGAAGACCTTCTACACACAAGATCCTGTTGTTGGGTACACTGACTACCCTTTTCTGAACAAATCAAACGGGAAAGTGGAACCCCTCTCCCGTCTTTGA

Protein Analysis

367

Amino Acids

40.35

Weight (kDa)

7.75

Isoelectric Point (pI)

29.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 428
AccB1I GGYRCC 2 cut(s) 119, 206
AccB7I CCANNNNNTGG 1 cut(s) 397
AciI CCGC 4 cut(s) 32, 78, 131, 776
AclWI GGATC 4 cut(s) 512, 541, 653, 1019
AcsI RAATTY 3 cut(s) 321, 384, 618
AcyI GRCGYC 2 cut(s) 120, 207
AfaI GTAC 3 cut(s) 53, 850, 1040
AfiI CCNNNNNNNGG 5 cut(s) 272, 397, 676, 958, 1034
AgeI ACCGGT 1 cut(s) 546
AjnI CCWGG 2 cut(s) 139, 790
AluBI AGCT 7 cut(s) 703, 764, 782, 812, 883, 896, 976
AluI AGCT 7 cut(s) 703, 764, 782, 812, 883, 896, 976
Alw21I GWGCWC 1 cut(s) 280
AlwI GGATC 4 cut(s) 512, 541, 653, 1019
Ama87I CYCGRG 2 cut(s) 363, 876
ApeKI GCWGC 2 cut(s) 416, 761
ApoI RAATTY 3 cut(s) 321, 384, 618
AsiGI ACCGGT 1 cut(s) 546
Asp700I GAANNNNTTC 1 cut(s) 1010
AspA2I CCTAGG 1 cut(s) 670
AspLEI GCGC 3 cut(s) 43, 122, 209
AspS9I GGNCC 2 cut(s) 347, 961
AsuC2I CCSGG 2 cut(s) 14, 124
AsuHPI GGTGA 1 cut(s) 615
AvaI CYCGRG 2 cut(s) 363, 876
AvaII GGWCC 2 cut(s) 347, 961
AvrII CCTAGG 1 cut(s) 670
BaeGI GKGCMC 1 cut(s) 469
BanI GGYRCC 2 cut(s) 119, 206
BanII GRGCYC 2 cut(s) 370, 722
BarI GAAGNNNNNNTAC 2 cut(s) 998, 1030
BbsI GAAGAC 1 cut(s) 1013
Bbv12I GWGCWC 1 cut(s) 280
BbvI GCAGC 2 cut(s) 403, 773
BccI CCATC 3 cut(s) 329, 440, 494
BcgI CGANNNNNNTGC 2 cut(s) 221, 255
BciT130I CCWGG 2 cut(s) 141, 792
BclI TGATCA 1 cut(s) 634
BcnI CCSGG 2 cut(s) 14, 124
BfaI CTAG 2 cut(s) 671, 861
BfoI RGCGCY 3 cut(s) 44, 123, 210
BfuAI ACCTGC 1 cut(s) 428
BisI GCNGC 4 cut(s) 32, 79, 417, 762
BlnI CCTAGG 1 cut(s) 670
BlsI GCNGC 4 cut(s) 33, 80, 418, 763
BmcAI AGTACT 1 cut(s) 53
Bme1390I CCNGG 4 cut(s) 14, 124, 141, 792
Bme18I GGWCC 2 cut(s) 347, 961
BmeT110I CYCGRG 2 cut(s) 363, 876
BmgT120I GGNCC 2 cut(s) 347, 961
BmiI GGNNCC 3 cut(s) 121, 208, 1083
BmrFI CCNGG 4 cut(s) 14, 124, 141, 792
BmrI ACTGGG 1 cut(s) 724
BmsI GCATC 2 cut(s) 634, 901
BmuI ACTGGG 1 cut(s) 724
BpiI GAAGAC 1 cut(s) 1013
BplI GAGNNNNNCTC 2 cut(s) 41, 73
Bpu10I CCTNAGC 1 cut(s) 357
BpuMI CCSGG 2 cut(s) 14, 124
BsaHI GRCGYC 2 cut(s) 120, 207
BsaJI CCNNGG 3 cut(s) 140, 268, 670
BsaWI WCCGGW 1 cut(s) 546
Bsc4I CCNNNNNNNGG 5 cut(s) 272, 397, 676, 958, 1034
Bse118I RCCGGY 3 cut(s) 37, 546, 625
Bse1I ACTGG 2 cut(s) 121, 719
BseBI CCWGG 2 cut(s) 141, 792
BseDI CCNNGG 3 cut(s) 140, 268, 670
BseGI GGATG 4 cut(s) 340, 526, 649, 916
BseLI CCNNNNNNNGG 5 cut(s) 272, 397, 676, 958, 1034
BseMII CTCAG 3 cut(s) 39, 761, 956
BseNI ACTGG 2 cut(s) 121, 719
BseSI GKGCMC 1 cut(s) 469
BseXI GCAGC 2 cut(s) 403, 773
BsgI GTGCAG 1 cut(s) 456
Bsh1285I CGRYCG 1 cut(s) 934
BshNI GGYRCC 2 cut(s) 119, 206
BshTI ACCGGT 1 cut(s) 546
BsiEI CGRYCG 1 cut(s) 934
BsiHKAI GWGCWC 1 cut(s) 280
BsiHKCI CYCGRG 2 cut(s) 363, 876
BsiSI CCGG 6 cut(s) 13, 38, 123, 332, 547, 626
BslI CCNNNNNNNGG 5 cut(s) 272, 397, 676, 958, 1034
BsmI GAATGC 1 cut(s) 430
BsoBI CYCGRG 2 cut(s) 363, 876
Bsp1286I GDGCHC 4 cut(s) 280, 370, 469, 722
Bsp143I GATC 6 cut(s) 504, 511, 533, 634, 658, 1024
BspACI CCGC 4 cut(s) 32, 78, 131, 776
BspCNI CTCAG 3 cut(s) 40, 760, 957
BspHI TCATGA 1 cut(s) 250
BspLI GGNNCC 3 cut(s) 121, 208, 1083
BspMI ACCTGC 1 cut(s) 428
BspPI GGATC 4 cut(s) 512, 541, 653, 1019
BspT107I GGYRCC 2 cut(s) 119, 206
BsrFI RCCGGY 3 cut(s) 37, 546, 625
BsrI ACTGG 2 cut(s) 121, 719
BssAI RCCGGY 3 cut(s) 37, 546, 625
BssECI CCNNGG 3 cut(s) 140, 268, 670
BssMI GATC 6 cut(s) 504, 511, 533, 634, 658, 1024
BssNI GRCGYC 2 cut(s) 120, 207
BssT1I CCWWGG 1 cut(s) 670
Bst2UI CCWGG 2 cut(s) 141, 792
Bst4CI ACNGT 3 cut(s) 73, 848, 932
Bst6I CTCTTC 1 cut(s) 798
BstACI GRCGYC 2 cut(s) 120, 207
BstAPI GCANNNNNTGC 1 cut(s) 596
BstC8I GCNNGC 2 cut(s) 45, 894
BstDEI CTNAG 4 cut(s) 48, 357, 747, 965
BstDSI CCRYGG 1 cut(s) 268
BstF5I GGATG 4 cut(s) 340, 526, 649, 916
BstH2I RGCGCY 3 cut(s) 44, 123, 210
BstHHI GCGC 3 cut(s) 43, 122, 209
BstKTI GATC 6 cut(s) 507, 514, 536, 637, 661, 1027
BstMBI GATC 6 cut(s) 504, 511, 533, 634, 658, 1024
BstMCI CGRYCG 1 cut(s) 934
BstMWI GCNNNNNNNGC 7 cut(s) 40, 206, 425, 434, 596, 700, 889
BstNI CCWGG 2 cut(s) 141, 792
BstNSI RCATGY 1 cut(s) 137
BstSCI CCNGG 4 cut(s) 12, 122, 139, 790
BstSLI GKGCMC 1 cut(s) 469
BstV1I GCAGC 2 cut(s) 403, 773
BstV2I GAAGAC 1 cut(s) 1013
BstX2I RGATCY 1 cut(s) 1024
BstYI RGATCY 1 cut(s) 1024
BtgI CCRYGG 1 cut(s) 268
BtsCI GGATG 4 cut(s) 340, 526, 649, 916
BtsI GCAGTG 3 cut(s) 585, 687, 802
BtsIMutI CAGTG 5 cut(s) 114, 585, 687, 802, 1041
BveI ACCTGC 1 cut(s) 428
Cac8I GCNNGC 2 cut(s) 45, 894
CciI TCATGA 1 cut(s) 250
CfoI GCGC 3 cut(s) 43, 122, 209
Cfr10I RCCGGY 3 cut(s) 37, 546, 625
Cfr13I GGNCC 2 cut(s) 347, 961
Csp6I GTAC 3 cut(s) 52, 849, 1039
CspAI ACCGGT 1 cut(s) 546
CviAII CATG 9 cut(s) 134, 171, 251, 344, 380, 461, 470, 640, 740
CviQI GTAC 3 cut(s) 52, 849, 1039
DdeI CTNAG 4 cut(s) 48, 357, 747, 965
DinI GGCGCC 2 cut(s) 121, 208
DpnI GATC 6 cut(s) 506, 513, 535, 636, 660, 1026
DpnII GATC 6 cut(s) 504, 511, 533, 634, 658, 1024
Eam1104I CTCTTC 1 cut(s) 798
EarI CTCTTC 1 cut(s) 798
Eco130I CCWWGG 1 cut(s) 670
Eco24I GRGCYC 2 cut(s) 370, 722
Eco47I GGWCC 2 cut(s) 347, 961
Eco88I CYCGRG 2 cut(s) 363, 876
EcoRI GAATTC 1 cut(s) 321
EcoRII CCWGG 2 cut(s) 139, 790
EcoT14I CCWWGG 1 cut(s) 670
EcoT38I GRGCYC 2 cut(s) 370, 722
EgeI GGCGCC 2 cut(s) 121, 208
EheI GGCGCC 2 cut(s) 121, 208
ErhI CCWWGG 1 cut(s) 670
FaeI CATG 9 cut(s) 137, 174, 254, 347, 383, 464, 473, 643, 743
FatI CATG 9 cut(s) 133, 170, 250, 343, 379, 460, 469, 639, 739
FbaI TGATCA 1 cut(s) 634
Fnu4HI GCNGC 4 cut(s) 32, 79, 417, 762
FokI GGATG 4 cut(s) 347, 533, 656, 923
FriOI GRGCYC 2 cut(s) 370, 722
Fsp4HI GCNGC 4 cut(s) 32, 79, 417, 762
FspBI CTAG 2 cut(s) 671, 861
GlaI GCGC 3 cut(s) 42, 121, 208
GluI GCNGC 4 cut(s) 32, 79, 417, 762
HaeII RGCGCY 3 cut(s) 44, 123, 210
HapII CCGG 6 cut(s) 13, 38, 123, 332, 547, 626
HhaI GCGC 3 cut(s) 43, 122, 209
Hin1I GRCGYC 2 cut(s) 120, 207
Hin1II CATG 9 cut(s) 137, 174, 254, 347, 383, 464, 473, 643, 743
Hin6I GCGC 3 cut(s) 41, 120, 207
HinP1I GCGC 3 cut(s) 41, 120, 207
HincII GTYRAC 2 cut(s) 69, 224
HindII GTYRAC 2 cut(s) 69, 224
HindIII AAGCTT 2 cut(s) 701, 974
HinfI GANTC 3 cut(s) 457, 562, 653
HpaII CCGG 6 cut(s) 13, 38, 123, 332, 547, 626
HphI GGTGA 1 cut(s) 615
Hpy166II GTNNAC 6 cut(s) 69, 187, 196, 224, 873, 1041
Hpy188I TCNGA 5 cut(s) 112, 567, 617, 658, 1059
Hpy188III TCNNGA 4 cut(s) 251, 559, 878, 964
Hpy8I GTNNAC 6 cut(s) 69, 187, 196, 224, 873, 1041
Hpy99I CGWCG 1 cut(s) 158
HpyAV CCTTC 3 cut(s) 89, 172, 1021
HpyCH4III ACNGT 3 cut(s) 73, 848, 932
HpyCH4IV ACGT 2 cut(s) 189, 234
HpyCH4V TGCA 4 cut(s) 437, 552, 892, 983
HpyF10VI GCNNNNNNNGC 7 cut(s) 40, 206, 425, 434, 596, 700, 889
HpyF3I CTNAG 4 cut(s) 48, 357, 747, 965
HpySE526I ACGT 2 cut(s) 189, 234
Hsp92I GRCGYC 2 cut(s) 120, 207
Hsp92II CATG 9 cut(s) 137, 174, 254, 347, 383, 464, 473, 643, 743
HspAI GCGC 3 cut(s) 41, 120, 207
KasI GGCGCC 2 cut(s) 119, 206
Ksp22I TGATCA 1 cut(s) 634
Kzo9I GATC 6 cut(s) 504, 511, 533, 634, 658, 1024
LmnI GCTCC 3 cut(s) 275, 400, 587
Lsp1109I GCAGC 2 cut(s) 403, 773
LweI GCATC 2 cut(s) 634, 901
MaeI CTAG 2 cut(s) 671, 861
MaeII ACGT 2 cut(s) 189, 234
MaeIII GTNAC 2 cut(s) 742, 755
MalI GATC 6 cut(s) 506, 513, 535, 636, 660, 1026
MboI GATC 6 cut(s) 504, 511, 533, 634, 658, 1024
MboII GAAGA 4 cut(s) 187, 728, 815, 1018
MflI RGATCY 1 cut(s) 1024
MhlI GDGCHC 4 cut(s) 280, 370, 469, 722
MluCI AATT 5 cut(s) 321, 384, 450, 488, 618
Mly113I GGCGCC 2 cut(s) 120, 207
MlyI GAGTC 1 cut(s) 647
MmeI TCCRAC 2 cut(s) 135, 565
MnlI CCTC 9 cut(s) 160, 306, 372, 762, 799, 816, 825, 860, 1097
MroXI GAANNNNTTC 1 cut(s) 1010
MseI TTAA 2 cut(s) 972, 978
MslI CAYNNNNRTG 1 cut(s) 642
MspI CCGG 6 cut(s) 13, 38, 123, 332, 547, 626
MspR9I CCNGG 4 cut(s) 14, 124, 141, 792
Mva1269I GAATGC 1 cut(s) 430
MvaI CCWGG 2 cut(s) 141, 792
MwoI GCNNNNNNNGC 7 cut(s) 40, 206, 425, 434, 596, 700, 889
NarI GGCGCC 2 cut(s) 120, 207
NciI CCSGG 2 cut(s) 14, 124
NdeII GATC 6 cut(s) 504, 511, 533, 634, 658, 1024
NlaIII CATG 9 cut(s) 137, 174, 254, 347, 383, 464, 473, 643, 743
NlaIV GGNNCC 3 cut(s) 121, 208, 1083
NspI RCATGY 1 cut(s) 137
PaeR7I CTCGAG 2 cut(s) 363, 876
PagI TCATGA 1 cut(s) 250
PctI GAATGC 1 cut(s) 430
PdmI GAANNNNTTC 1 cut(s) 1010
PfeI GAWTC 2 cut(s) 457, 562
PflMI CCANNNNNTGG 1 cut(s) 397
PinAI ACCGGT 1 cut(s) 546
PkrI GCNGC 4 cut(s) 33, 80, 418, 763
PleI GAGTC 1 cut(s) 647
PluTI GGCGCC 2 cut(s) 123, 210
PpsI GAGTC 1 cut(s) 647
Psp6I CCWGG 2 cut(s) 139, 790
PspGI CCWGG 2 cut(s) 139, 790
PspN4I GGNNCC 3 cut(s) 121, 208, 1083
PspPI GGNCC 2 cut(s) 347, 961
PspXI VCTCGAGB 1 cut(s) 363
PsuI RGATCY 1 cut(s) 1024
RsaI GTAC 3 cut(s) 53, 850, 1040
RsaNI GTAC 3 cut(s) 52, 849, 1039
RseI CAYNNNNRTG 1 cut(s) 642
SaqAI TTAA 2 cut(s) 972, 978
SatI GCNGC 4 cut(s) 32, 79, 417, 762
Sau3AI GATC 6 cut(s) 504, 511, 533, 634, 658, 1024
Sau96I GGNCC 2 cut(s) 347, 961
ScaI AGTACT 1 cut(s) 53
SchI GAGTC 1 cut(s) 647
ScrFI CCNGG 4 cut(s) 14, 124, 141, 792
SduI GDGCHC 4 cut(s) 280, 370, 469, 722
SfaNI GCATC 2 cut(s) 634, 901
SfoI GGCGCC 2 cut(s) 121, 208
Sfr274I CTCGAG 2 cut(s) 363, 876
SinI GGWCC 2 cut(s) 347, 961
SlaI CTCGAG 2 cut(s) 363, 876
SmiMI CAYNNNNRTG 1 cut(s) 642
SmlI CTYRAG 2 cut(s) 363, 876
SmoI CTYRAG 2 cut(s) 363, 876
Sse9I AATT 5 cut(s) 321, 384, 450, 488, 618
SsiI CCGC 4 cut(s) 32, 78, 131, 776
SspDI GGCGCC 2 cut(s) 119, 206
SspMI CTAG 2 cut(s) 671, 861
StyD4I CCNGG 4 cut(s) 12, 122, 139, 790
StyI CCWWGG 1 cut(s) 670
TaaI ACNGT 3 cut(s) 73, 848, 932
TaiI ACGT 2 cut(s) 192, 237
TaqI TCGA 4 cut(s) 364, 444, 514, 877
TasI AATT 5 cut(s) 321, 384, 450, 488, 618
TatI WGTACW 1 cut(s) 51
TauI GCSGC 2 cut(s) 34, 81
TfiI GAWTC 2 cut(s) 457, 562
Tru1I TTAA 2 cut(s) 972, 978
Tru9I TTAA 2 cut(s) 972, 978
TscAI CASTG 5 cut(s) 121, 585, 687, 802, 1048
TseI GCWGC 2 cut(s) 416, 761
TspDTI ATGAA 6 cut(s) 234, 267, 396, 449, 728, 816
TspGWI ACGGA 2 cut(s) 39, 533
TspRI CASTG 5 cut(s) 121, 585, 687, 802, 1048
Van91I CCANNNNNTGG 1 cut(s) 397
VpaK11BI GGWCC 2 cut(s) 347, 961
XapI RAATTY 3 cut(s) 321, 384, 618
XceI RCATGY 1 cut(s) 137
XhoI CTCGAG 2 cut(s) 363, 876
XmaJI CCTAGG 1 cut(s) 670
XmnI GAANNNNTTC 1 cut(s) 1010
XspI CTAG 2 cut(s) 671, 861
ZrmI AGTACT 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.