Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000870

Physical Location & Seq

Genomic Coordinates Forward (+)

7337110 .. 7338363

Gene Structure 1254 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG093700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGTGGAAGCAGGTTTCCACATGTTCCTGGGATTTACACAGACGAACAGGTTGAGGCATGGAAGAAGGTGGTCGACGCGGTTCACGCCAAAGGTGCCATCATTTTCTGTCAACTTTGGCATGTCGGTGGTGCTTCTCATCAAGTTTTTCAACCTGGTGGGGGATCACCAATTTCTTCAACCAACAACCCCATCGCAAAGAGATGGAAAGTACGTTCTCTTGCCAGATGGGTCTCATGACGCTTACTCTGAACCTCGACGCCTCGAGACCCACGAAATACCCCAGATCGTTGAGCAGTATCGCCACGCTGCCTTGAATGCCATTCGCGCAGGTTTTGATGGAATTGAGATCCATTCTGCACATGGCTACCTCATCGATCAATTCTTGAAAGATGGGATCAACGATCGAACTGATGAGTATGGTGGGTCGCTTGAAAACCGCTGCAAGTTCTTGATCGAAACTGTTCAAGCAGTAGTTGAAGCCGTTGGTGCTGATAGAGTTGCTGTTAGAATCTCACCAGCTATGGATCACCTTGACGCTATTGATTCCGACCCAATTGTCCTAGGCTTGGCAGTGATTGAAAGACTCAACAAGCTTCAACAAAACGTAGGCTCAAAGCTTGCTTATCTTCATGTGATGCCTCGTTTCGCAGCTCATGGACAAGTAGAGTCTGATCAAGACGAAGCTCGCTTCATGAGGACTTTGAGAAACGCTTATGAGGGTACATTCATGGCTAGTGGAGGGTTCACCAGAGAGCTAGGAATGGATGATGTGGCTTCCGATGATACTGATTTGGTGTCGTATGGTCGCCAGTTTATCTCAAACCCTGACTTGGTTTTGAGATTTAAGCCGAATGCTCCTTTGAATAAGTATAATAGGGAGACTTTCTACACCCATGACCCTGTTGTTGGGTACACAGACTATCCTTTTCTAAACAGTGAAAGTGTGAAGGAGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009605 GO:0009607 GO:0009620 GO:0009694 GO:0009695 GO:0009791 GO:0009908 GO:0009987 GO:0010035 GO:0010193 GO:0010817 GO:0016053 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0019752 GO:0022414 GO:0031407 GO:0031408 GO:0032501 GO:0032502 GO:0032787 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042579 GO:0042802 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046677 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0055114 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0090567 GO:0099402 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

319

Amino Acids

36.08

Weight (kDa)

5.73

Isoelectric Point (pI)

34.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_FMN	PF00724	85 - 288	7.4e-52	NADH:flavin oxidoreductase / NADH oxidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06050 AT2G06050 AT2G06050
fragaria_vesca	FvH4_1g08451 FvH4_1g08452 FvH4_1g08453 FvH4_1g08454 FvH4_1g08510 FvH4_1g08510 FvH4_1g08510 FvH4_1g08510
malus_domestica	MD00G1142600.v1.1 MD02G1089100.v1.1 MD12G1067300.v1.1 MD15G1216200.v1.1
prunus_persica	Prupe.7G200800_v2.0.a1
pyrus_communis	pycom02g07130 pycom15g19180
rosa_chinensis	RchiOBHm_Chr2g0094561 RchiOBHm_Chr2g0094611 RchiOBHm_Chr2g0094631 RchiOBHm_Chr2g0094641 RchiOBHm_Chr2g0150041 RchiOBHm_Chr7g0211621 RchiOBHm_Chr7g0230281
rosa_laevigata	RLG00000002990 RLG00000016504 RLG00000016506 RLG00000016507 RLG00000020462
rosa_multiflora	Rmu_co8133296.1_g000001 Rmu_co8390375.1_g000001 Rmu_sc0003760.1_g000017 Rmu_sc0004232.1_g000012 Rmu_sc0004359.1_g000033 Rmu_sc0004359.1_g000036 Rmu_sc0006422.1_g000001 Rmu_sc0009445.1_g000018 Rmu_sc0017068.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097490 Rroxscaffold_2G00147030 Rroxscaffold_2G00147040 Rroxscaffold_2G00147050 Rroxscaffold_3G00247670
rosa_rugosa	Rorug02G0045400 Rorug02G0045400 Rorug02G0045600 Rorug02G0045700 Rorug02G0418000 Rorug07G0126300
rosa_samantha	Rh2AG093100 Rh2BG093400 Rh2BG093700 Rh2BG489500 Rh2CG095800 Rh2CG096000 Rh2DG092200 Rh2DG092400 Rh7AG259000 Rh7BG253300 Rh7CG276100 Rh7DG266600
rosa_wichuraiana	Rw0G003550 Rw0G003560 Rw2G038940 Rw7G022140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	557
Acc36I	ACCTGC	2 cut(s)	2, 320
AccB1I	GGYRCC	1 cut(s)	94
AccI	GTMKAC	1 cut(s)	74
AccII	CGCG	2 cut(s)	79, 327
AciI	CCGC	2 cut(s)	79, 439
AclWI	GGATC	4 cut(s)	171, 343, 404, 534
AcyI	GRCGYC	1 cut(s)	259
AfaI	GTAC	3 cut(s)	212, 724, 914
AfiI	CCNNNNNNNGG	4 cut(s)	160, 568, 832, 908
AflIII	ACRYGT	1 cut(s)	21
AjnI	CCWGG	2 cut(s)	27, 153
AloI	GAACNNNNNNTCC	2 cut(s)	198, 230
AluBI	AGCT	6 cut(s)	521, 595, 619, 653, 686, 757
AluI	AGCT	6 cut(s)	521, 595, 619, 653, 686, 757
Alw26I	GTCTC	3 cut(s)	237, 260, 875
AlwI	GGATC	4 cut(s)	171, 343, 404, 534
Ama87I	CYCGRG	1 cut(s)	263
ApeKI	GCWGC	3 cut(s)	308, 441, 650
Asp700I	GAANNNNTTC	1 cut(s)	462
AspA2I	CCTAGG	1 cut(s)	562
AspLEI	GCGC	1 cut(s)	329
AsuHPI	GGTGA	4 cut(s)	158, 507, 521, 739
AvaI	CYCGRG	1 cut(s)	263
AvrII	CCTAGG	1 cut(s)	562
BanI	GGYRCC	1 cut(s)	94
BbvI	GCAGC	3 cut(s)	295, 428, 662
BccI	CCATC	6 cut(s)	106, 197, 199, 221, 332, 386
BceAI	ACGGC	1 cut(s)	467
BciT130I	CCWGG	2 cut(s)	29, 155
BclI	TGATCA	1 cut(s)	673
BcoDI	GTCTC	3 cut(s)	237, 260, 875
BfaI	CTAG	3 cut(s)	563, 735, 758
BfuAI	ACCTGC	2 cut(s)	2, 320
BisI	GCNGC	3 cut(s)	309, 442, 651
BlnI	CCTAGG	1 cut(s)	562
BlsI	GCNGC	3 cut(s)	310, 443, 652
Bme1390I	CCNGG	2 cut(s)	29, 155
BmeT110I	CYCGRG	1 cut(s)	263
BmiI	GGNNCC	1 cut(s)	96
BmrFI	CCNGG	2 cut(s)	29, 155
BmsI	GCATC	1 cut(s)	627
Bsa29I	ATCGAT	1 cut(s)	375
BsaHI	GRCGYC	1 cut(s)	259
BsaI	GGTCTC	2 cut(s)	237, 260
BsaJI	CCNNGG	2 cut(s)	28, 562
Bsc4I	CCNNNNNNNGG	4 cut(s)	160, 568, 832, 908
Bse1I	ACTGG	1 cut(s)	811
BseBI	CCWGG	2 cut(s)	29, 155
BseCI	ATCGAT	1 cut(s)	375
BseDI	CCNNGG	2 cut(s)	28, 562
BseGI	GGATG	1 cut(s)	772
BseLI	CCNNNNNNNGG	4 cut(s)	160, 568, 832, 908
BseNI	ACTGG	1 cut(s)	811
BseXI	GCAGC	3 cut(s)	295, 428, 662
BsgI	GTGCAG	1 cut(s)	342
Bsh1236I	CGCG	2 cut(s)	79, 327
Bsh1285I	CGRYCG	1 cut(s)	406
BshNI	GGYRCC	1 cut(s)	94
BshVI	ATCGAT	1 cut(s)	375
BsiEI	CGRYCG	1 cut(s)	406
BsiHKCI	CYCGRG	1 cut(s)	263
BslI	CCNNNNNNNGG	4 cut(s)	160, 568, 832, 908
BsmAI	GTCTC	3 cut(s)	237, 260, 875
BsmI	GAATGC	2 cut(s)	322, 859
Bso31I	GGTCTC	2 cut(s)	237, 260
BsoBI	CYCGRG	1 cut(s)	263
Bsp143I	GATC	9 cut(s)	163, 285, 348, 376, 396, 403, 453, 526, 673
BspACI	CCGC	2 cut(s)	79, 439
BspDI	ATCGAT	1 cut(s)	375
BspFNI	CGCG	2 cut(s)	79, 327
BspHI	TCATGA	2 cut(s)	235, 693
BspLI	GGNNCC	1 cut(s)	96
BspMI	ACCTGC	2 cut(s)	2, 320
BspPI	GGATC	4 cut(s)	171, 343, 404, 534
BspT107I	GGYRCC	1 cut(s)	94
BspTNI	GGTCTC	2 cut(s)	237, 260
BsrI	ACTGG	1 cut(s)	811
BssECI	CCNNGG	2 cut(s)	28, 562
BssMI	GATC	9 cut(s)	163, 285, 348, 376, 396, 403, 453, 526, 673
BssNI	GRCGYC	1 cut(s)	259
BssT1I	CCWWGG	1 cut(s)	562
Bst2UI	CCWGG	2 cut(s)	29, 155
Bst4CI	ACNGT	2 cut(s)	463, 938
BstACI	GRCGYC	1 cut(s)	259
BstC8I	GCNNGC	2 cut(s)	621, 688
BstF5I	GGATG	1 cut(s)	772
BstFNI	CGCG	2 cut(s)	79, 327
BstHHI	GCGC	1 cut(s)	329
BstKTI	GATC	9 cut(s)	166, 288, 351, 379, 399, 406, 456, 529, 676
BstMAI	GTCTC	3 cut(s)	237, 260, 875
BstMBI	GATC	9 cut(s)	163, 285, 348, 376, 396, 403, 453, 526, 673
BstMCI	CGRYCG	1 cut(s)	406
BstMWI	GCNNNNNNNGC	5 cut(s)	85, 94, 317, 326, 488
BstNI	CCWGG	2 cut(s)	29, 155
BstNSI	RCATGY	2 cut(s)	25, 124
BstSCI	CCNGG	2 cut(s)	27, 153
BstUI	CGCG	2 cut(s)	79, 327
BstV1I	GCAGC	3 cut(s)	295, 428, 662
BstX2I	RGATCY	1 cut(s)	348
BstYI	RGATCY	1 cut(s)	348
Bsu15I	ATCGAT	1 cut(s)	375
BsuTUI	ATCGAT	1 cut(s)	375
BtgZI	GCGATG	1 cut(s)	177
BtsCI	GGATG	1 cut(s)	772
BtsI	GCAGTG	1 cut(s)	579
BtsIMutI	CAGTG	2 cut(s)	579, 943
BveI	ACCTGC	2 cut(s)	2, 320
Cac8I	GCNNGC	2 cut(s)	621, 688
CciI	TCATGA	2 cut(s)	235, 693
CfoI	GCGC	1 cut(s)	329
ClaI	ATCGAT	1 cut(s)	375
CseI	GACGC	4 cut(s)	85, 248, 267, 545
CsiI	ACCWGGT	1 cut(s)	153
Csp6I	GTAC	3 cut(s)	211, 723, 913
CviQI	GTAC	3 cut(s)	211, 723, 913
DpnI	GATC	9 cut(s)	165, 287, 350, 378, 398, 405, 455, 528, 675
DpnII	GATC	9 cut(s)	163, 285, 348, 376, 396, 403, 453, 526, 673
DrdI	GACNNNNNNGTC	1 cut(s)	557
DseDI	GACNNNNNNGTC	1 cut(s)	557
Eco130I	CCWWGG	1 cut(s)	562
Eco31I	GGTCTC	2 cut(s)	237, 260
Eco88I	CYCGRG	1 cut(s)	263
EcoRII	CCWGG	2 cut(s)	27, 153
EcoT14I	CCWWGG	1 cut(s)	562
ErhI	CCWWGG	1 cut(s)	562
FbaI	TGATCA	1 cut(s)	673
FblI	GTMKAC	1 cut(s)	74
Fnu4HI	GCNGC	3 cut(s)	309, 442, 651
FokI	GGATG	1 cut(s)	779
Fsp4HI	GCNGC	3 cut(s)	309, 442, 651
FspBI	CTAG	3 cut(s)	563, 735, 758
GlaI	GCGC	1 cut(s)	328
GluI	GCNGC	3 cut(s)	309, 442, 651
HgaI	GACGC	4 cut(s)	85, 248, 267, 545
HhaI	GCGC	1 cut(s)	329
Hin1I	GRCGYC	1 cut(s)	259
Hin6I	GCGC	1 cut(s)	327
HinP1I	GCGC	1 cut(s)	327
HincII	GTYRAC	2 cut(s)	75, 112
HindII	GTYRAC	2 cut(s)	75, 112
HindIII	AAGCTT	2 cut(s)	593, 617
HinfI	GANTC	4 cut(s)	510, 545, 585, 668
HphI	GGTGA	4 cut(s)	158, 507, 521, 739
Hpy166II	GTNNAC	5 cut(s)	75, 84, 112, 747, 915
Hpy188I	TCNGA	4 cut(s)	250, 550, 673, 781
Hpy188III	TCNNGA	6 cut(s)	236, 265, 385, 451, 677, 694
Hpy8I	GTNNAC	5 cut(s)	75, 84, 112, 747, 915
Hpy99I	CGWCG	2 cut(s)	79, 261
HpyAV	CCTTC	2 cut(s)	60, 943
HpyCH4III	ACNGT	2 cut(s)	463, 938
HpyCH4IV	ACGT	2 cut(s)	213, 606
HpyCH4V	TGCA	2 cut(s)	359, 444
HpyF10VI	GCNNNNNNNGC	5 cut(s)	85, 94, 317, 326, 488
HpySE526I	ACGT	2 cut(s)	213, 606
Hsp92I	GRCGYC	1 cut(s)	259
HspAI	GCGC	1 cut(s)	327
Ksp22I	TGATCA	1 cut(s)	673
Kzo9I	GATC	9 cut(s)	163, 285, 348, 376, 396, 403, 453, 526, 673
LmnI	GCTCC	1 cut(s)	862
Lsp1109I	GCAGC	3 cut(s)	295, 428, 662
LweI	GCATC	1 cut(s)	627
MabI	ACCWGGT	1 cut(s)	153
MaeI	CTAG	3 cut(s)	563, 735, 758
MaeII	ACGT	2 cut(s)	213, 606
MalI	GATC	9 cut(s)	165, 287, 350, 378, 398, 405, 455, 528, 675
MboI	GATC	9 cut(s)	163, 285, 348, 376, 396, 403, 453, 526, 673
MboII	GAAGA	3 cut(s)	75, 167, 620
MfeI	CAATTG	1 cut(s)	555
MflI	RGATCY	1 cut(s)	348
MluCI	AATT	5 cut(s)	170, 342, 380, 555, 955
MlyI	GAGTC	2 cut(s)	579, 677
MmeI	TCCRAC	1 cut(s)	573
MnlI	CCTC	8 cut(s)	48, 264, 272, 380, 651, 690, 712, 734
MroXI	GAANNNNTTC	1 cut(s)	462
MseI	TTAA	1 cut(s)	846
MslI	CAYNNNNRTG	1 cut(s)	125
MspA1I	CMGCKG	1 cut(s)	441
MspR9I	CCNGG	2 cut(s)	29, 155
MunI	CAATTG	1 cut(s)	555
Mva1269I	GAATGC	2 cut(s)	322, 859
MvaI	CCWGG	2 cut(s)	29, 155
MvnI	CGCG	2 cut(s)	79, 327
MwoI	GCNNNNNNNGC	5 cut(s)	85, 94, 317, 326, 488
NdeII	GATC	9 cut(s)	163, 285, 348, 376, 396, 403, 453, 526, 673
NlaIV	GGNNCC	1 cut(s)	96
NspI	RCATGY	2 cut(s)	25, 124
PaeR7I	CTCGAG	1 cut(s)	263
PagI	TCATGA	2 cut(s)	235, 693
PciI	ACATGT	1 cut(s)	21
PcsI	WCGNNNNNNNCGW	1 cut(s)	270
PctI	GAATGC	2 cut(s)	322, 859
PdmI	GAANNNNTTC	1 cut(s)	462
PfeI	GAWTC	2 cut(s)	510, 545
PkrI	GCNGC	3 cut(s)	310, 443, 652
Ple19I	CGATCG	1 cut(s)	406
PleI	GAGTC	2 cut(s)	579, 676
PpsI	GAGTC	2 cut(s)	579, 676
PscI	ACATGT	1 cut(s)	21
Psp6I	CCWGG	2 cut(s)	27, 153
PspGI	CCWGG	2 cut(s)	27, 153
PspN4I	GGNNCC	1 cut(s)	96
PsuI	RGATCY	1 cut(s)	348
PvuI	CGATCG	1 cut(s)	406
RsaI	GTAC	3 cut(s)	212, 724, 914
RsaNI	GTAC	3 cut(s)	211, 723, 913
RseI	CAYNNNNRTG	1 cut(s)	125
SalI	GTCGAC	1 cut(s)	73
SaqAI	TTAA	1 cut(s)	846
SatI	GCNGC	3 cut(s)	309, 442, 651
Sau3AI	GATC	9 cut(s)	163, 285, 348, 376, 396, 403, 453, 526, 673
SchI	GAGTC	2 cut(s)	579, 677
ScrFI	CCNGG	2 cut(s)	29, 155
SexAI	ACCWGGT	1 cut(s)	153
SfaNI	GCATC	1 cut(s)	627
Sfr274I	CTCGAG	1 cut(s)	263
SlaI	CTCGAG	1 cut(s)	263
SmiMI	CAYNNNNRTG	1 cut(s)	125
SmlI	CTYRAG	1 cut(s)	263
SmoI	CTYRAG	1 cut(s)	263
Sse9I	AATT	5 cut(s)	170, 342, 380, 555, 955
SsiI	CCGC	2 cut(s)	79, 439
SspMI	CTAG	3 cut(s)	563, 735, 758
StyD4I	CCNGG	2 cut(s)	27, 153
StyI	CCWWGG	1 cut(s)	562
TaaI	ACNGT	2 cut(s)	463, 938
TaiI	ACGT	2 cut(s)	216, 609
TaqI	TCGA	6 cut(s)	74, 256, 264, 375, 406, 456
TasI	AATT	5 cut(s)	170, 342, 380, 555, 955
TfiI	GAWTC	2 cut(s)	510, 545
Tru1I	TTAA	1 cut(s)	846
Tru9I	TTAA	1 cut(s)	846
TscAI	CASTG	2 cut(s)	579, 943
TseI	GCWGC	3 cut(s)	308, 441, 650
TspDTI	ATGAA	3 cut(s)	620, 682, 718
TspRI	CASTG	2 cut(s)	579, 943
XceI	RCATGY	2 cut(s)	25, 124
XcmI	CCANNNNNNNNNTGG	1 cut(s)	359
XhoI	CTCGAG	1 cut(s)	263
XmaJI	CCTAGG	1 cut(s)	562
XmiI	GTMKAC	1 cut(s)	74
XmnI	GAANNNNTTC	1 cut(s)	462
XspI	CTAG	3 cut(s)	563, 735, 758

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.