Rmu_sc0003760.1_g000017

12-oxophytodienoate reductase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003760.1
Physical Location & Seq
Reverse (-)
63134 .. 65235
2102 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003760.1_g000017.1.cds

Sequence Viewer

Length: 1173 bp
atgggggatttttcatcagaaggactcaccctgttctctccttacaagatgggcaggctcaatctctctcacagggtggtgcttgcgccattgacaaggtgtcgagctcctaacgaaattccacagccagcgatgatcgagtattattctcagaggtcaacccccggcggccttcttattactgaagccacttcgctctccgacacgagtgctgggtttccacgtgttcctgggatttacacagatgaacaggttaaaaaatggacgaaagtggtcgacgctgttcacgccaaaggtgccattattttctgtcaacttttgcatgcaggtcgtgcttctcatcaagtttaccaacctagtgggggttcgccgatttcttcaaccaacaatcccatttcaaatggatggaaaattctgttgccagatgggtctcaagagacttatgctcagcctcgacccctcgaaacccatgaaatacctcagattgttgagcagtatcgccacgctgccttaaatgctattcgagcaggttttgatggaattgagatccatgcggcacacggctacctcattgatcaattcttaaaagatgggattaacgatcgaactgatgaatatggtgggtcgcttgcaaaccgttgcaaattcttgattcagattgttcaagcagtagttgaagccattggtgctaatagagttgccgtcagaatctcaccagctattgatttccatgatgctacggactccgacccaattggcctaggccttgcagtgattgacaagctcaatcagcttcaatacaacgtaggctcaaagctcgcttatctccatgtaactcagcctcgtttctttgctcaatacaacggaggcttggccgagtctgatcaagacacatttgctcaattcatgaggactttgcgagaatcttatcaaggtccattcatggctagtggagggtttacgagagaactaggaatggaaaccgtggcttccggtgatgctgatttagtgtcatatggccggaattttatctcaaaccctgacttggtgttgaggtttaagttgaatgctcccttgaacaagtatattagggagactttctacaccgatgaccctgtagttgggtacacagactacccttttctggacaaagaaagtgtgaaagaggattag

Protein Analysis

390

Amino Acids

43.07

Weight (kDa)

5.6

Isoelectric Point (pI)

30.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 317, 518
AccB1I GGYRCC 1 cut(s) 296
AccI GTMKAC 1 cut(s) 276
AciI CCGC 2 cut(s) 168, 554
AclWI GGATC 1 cut(s) 541
AcoI YGGCCR 2 cut(s) 873, 1018
AcsI RAATTY 4 cut(s) 117, 411, 644, 1024
AcuI CTGAAG 1 cut(s) 204
AcvI CACGTG 1 cut(s) 224
AdeI CACNNNGTG 1 cut(s) 76
AfaI GTAC 1 cut(s) 1127
AfiI CCNNNNNNNGG 4 cut(s) 362, 1045, 1121, 1144
AflIII ACRYGT 1 cut(s) 223
AgsI TTSAA 7 cut(s) 381, 399, 665, 677, 797, 1066, 1078
AhdI GACNNNNNGTC 1 cut(s) 99
AjnI CCWGG 1 cut(s) 229
AluBI AGCT 5 cut(s) 107, 719, 784, 793, 817
AluI AGCT 5 cut(s) 107, 719, 784, 793, 817
Alw21I GWGCWC 1 cut(s) 109
Alw26I GTCTC 3 cut(s) 431, 435, 1088
AlwI GGATC 1 cut(s) 541
AoxI GGCC 5 cut(s) 169, 757, 763, 873, 1018
ApeKI GCWGC 1 cut(s) 506
ApoI RAATTY 4 cut(s) 117, 411, 644, 1024
AspA2I CCTAGG 1 cut(s) 760
AspLEI GCGC 1 cut(s) 88
AspS9I GGNCC 1 cut(s) 935
AsuC2I CCSGG 1 cut(s) 165
AsuHPI GGTGA 3 cut(s) 19, 705, 1007
AvaII GGWCC 1 cut(s) 935
AvrII CCTAGG 1 cut(s) 760
BanI GGYRCC 1 cut(s) 296
BanII GRGCYC 1 cut(s) 109
BauI CACGAG 1 cut(s) 205
BbrPI CACGTG 1 cut(s) 224
Bbv12I GWGCWC 1 cut(s) 109
BbvI GCAGC 1 cut(s) 493
BccI CCATC 5 cut(s) 43, 399, 419, 530, 584
BceAI ACGGC 2 cut(s) 577, 686
BcgI CGANNNNNNTGC 4 cut(s) 191, 225, 311, 345
BciT130I CCWGG 1 cut(s) 231
BclI TGATCA 2 cut(s) 574, 883
BcnI CCSGG 1 cut(s) 165
BcoDI GTCTC 3 cut(s) 431, 435, 1088
BfaI CTAG 4 cut(s) 357, 761, 948, 971
BfmI CTRYAG 1 cut(s) 1116
BfuAI ACCTGC 2 cut(s) 317, 518
BisI GCNGC 3 cut(s) 169, 507, 555
BlnI CCTAGG 1 cut(s) 760
BlpI GCTNAGC 1 cut(s) 447
BlsI GCNGC 3 cut(s) 170, 508, 556
Bme1390I CCNGG 2 cut(s) 165, 231
Bme18I GGWCC 1 cut(s) 935
BmeRI GACNNNNNGTC 1 cut(s) 99
BmgT120I GGNCC 1 cut(s) 935
BmiI GGNNCC 1 cut(s) 298
BmrFI CCNGG 2 cut(s) 165, 231
BmsI GCATC 2 cut(s) 724, 988
Bpu1102I GCTNAGC 1 cut(s) 447
BpuEI CTTGAG 1 cut(s) 417
BpuMI CCSGG 1 cut(s) 165
BsaAI YACGTR 1 cut(s) 224
BsaI GGTCTC 1 cut(s) 435
BsaJI CCNNGG 4 cut(s) 163, 230, 760, 984
BsaWI WCCGGW 1 cut(s) 992
Bsc4I CCNNNNNNNGG 4 cut(s) 362, 1045, 1121, 1144
BseBI CCWGG 1 cut(s) 231
BseDI CCNNGG 4 cut(s) 163, 230, 760, 984
BseGI GGATG 1 cut(s) 410
BseLI CCNNNNNNNGG 4 cut(s) 362, 1045, 1121, 1144
BseMII CTCAG 4 cut(s) 164, 461, 494, 851
BseXI GCAGC 1 cut(s) 493
BseYI CCCAGC 1 cut(s) 212
Bsh1285I CGRYCG 1 cut(s) 604
BshFI GGCC 5 cut(s) 171, 759, 765, 875, 1020
BshNI GGYRCC 1 cut(s) 296
BsiEI CGRYCG 1 cut(s) 604
BsiHKAI GWGCWC 1 cut(s) 109
BsiSI CCGG 3 cut(s) 165, 993, 1021
BslI CCNNNNNNNGG 4 cut(s) 362, 1045, 1121, 1144
BsmAI GTCTC 3 cut(s) 431, 435, 1088
BsmI GAATGC 1 cut(s) 1072
BsnI GGCC 5 cut(s) 171, 759, 765, 875, 1020
Bso31I GGTCTC 1 cut(s) 435
Bsp1286I GDGCHC 1 cut(s) 109
Bsp143I GATC 5 cut(s) 135, 546, 574, 601, 883
Bsp1720I GCTNAGC 1 cut(s) 447
BspACI CCGC 2 cut(s) 168, 554
BspANI GGCC 5 cut(s) 171, 759, 765, 875, 1020
BspCNI CTCAG 4 cut(s) 163, 460, 493, 850
BspHI TCATGA 1 cut(s) 906
BspLI GGNNCC 1 cut(s) 298
BspMI ACCTGC 2 cut(s) 317, 518
BspPI GGATC 1 cut(s) 541
BspT107I GGYRCC 1 cut(s) 296
BspTNI GGTCTC 1 cut(s) 435
BssECI CCNNGG 4 cut(s) 163, 230, 760, 984
BssMI GATC 5 cut(s) 135, 546, 574, 601, 883
BssSI CACGAG 1 cut(s) 205
BssT1I CCWWGG 1 cut(s) 760
Bst2BI CACGAG 1 cut(s) 205
Bst2UI CCWGG 1 cut(s) 231
Bst4CI ACNGT 2 cut(s) 638, 985
BstAPI GCANNNNNTGC 1 cut(s) 332
BstBAI YACGTR 1 cut(s) 224
BstC8I GCNNGC 6 cut(s) 56, 84, 129, 324, 630, 819
BstDEI CTNAG 4 cut(s) 150, 447, 480, 837
BstDSI CCRYGG 1 cut(s) 984
BstF5I GGATG 1 cut(s) 410
BstHHI GCGC 1 cut(s) 88
BstKTI GATC 5 cut(s) 138, 549, 577, 604, 886
BstMAI GTCTC 3 cut(s) 431, 435, 1088
BstMBI GATC 5 cut(s) 135, 546, 574, 601, 883
BstMCI CGRYCG 1 cut(s) 604
BstMWI GCNNNNNNNGC 7 cut(s) 287, 296, 332, 515, 524, 686, 790
BstNI CCWGG 1 cut(s) 231
BstNSI RCATGY 1 cut(s) 326
BstSCI CCNGG 2 cut(s) 163, 229
BstSFI CTRYAG 1 cut(s) 1116
BstV1I GCAGC 1 cut(s) 493
BstX2I RGATCY 1 cut(s) 546
BstXI CCANNNNNNTGG 1 cut(s) 359
BstYI RGATCY 1 cut(s) 546
BsuRI GGCC 5 cut(s) 171, 759, 765, 875, 1020
BtgI CCRYGG 1 cut(s) 984
BtgZI GCGATG 1 cut(s) 146
BtsCI GGATG 1 cut(s) 410
BtsI GCAGTG 1 cut(s) 777
BtsIMutI CAGTG 1 cut(s) 777
BveI ACCTGC 2 cut(s) 317, 518
Cac8I GCNNGC 6 cut(s) 56, 84, 129, 324, 630, 819
CciI TCATGA 1 cut(s) 906
CfoI GCGC 1 cut(s) 88
Cfr13I GGNCC 1 cut(s) 935
CseI GACGC 1 cut(s) 287
Csp6I GTAC 1 cut(s) 1126
CviAII CATG 7 cut(s) 323, 470, 551, 731, 830, 907, 943
CviQI GTAC 1 cut(s) 1126
DdeI CTNAG 4 cut(s) 150, 447, 480, 837
DpnI GATC 5 cut(s) 137, 548, 576, 603, 885
DpnII GATC 5 cut(s) 135, 546, 574, 601, 883
DraIII CACNNNGTG 1 cut(s) 76
DriI GACNNNNNGTC 1 cut(s) 99
EaeI YGGCCR 2 cut(s) 873, 1018
Eam1105I GACNNNNNGTC 1 cut(s) 99
Ecl136II GAGCTC 1 cut(s) 107
Eco130I CCWWGG 1 cut(s) 760
Eco147I AGGCCT 1 cut(s) 765
Eco24I GRGCYC 1 cut(s) 109
Eco31I GGTCTC 1 cut(s) 435
Eco47I GGWCC 1 cut(s) 935
Eco53kI GAGCTC 1 cut(s) 107
Eco57I CTGAAG 1 cut(s) 204
Eco72I CACGTG 1 cut(s) 224
EcoICRI GAGCTC 1 cut(s) 107
EcoRII CCWGG 1 cut(s) 229
EcoT14I CCWWGG 1 cut(s) 760
EcoT38I GRGCYC 1 cut(s) 109
ErhI CCWWGG 1 cut(s) 760
FaeI CATG 7 cut(s) 326, 473, 554, 734, 833, 910, 946
FatI CATG 7 cut(s) 322, 469, 550, 730, 829, 906, 942
FauNDI CATATG 1 cut(s) 1015
FbaI TGATCA 2 cut(s) 574, 883
FblI GTMKAC 1 cut(s) 276
Fnu4HI GCNGC 3 cut(s) 169, 507, 555
FokI GGATG 1 cut(s) 417
FriOI GRGCYC 1 cut(s) 109
Fsp4HI GCNGC 3 cut(s) 169, 507, 555
FspBI CTAG 4 cut(s) 357, 761, 948, 971
GlaI GCGC 1 cut(s) 87
GluI GCNGC 3 cut(s) 169, 507, 555
GsaI CCCAGC 1 cut(s) 216
HaeIII GGCC 5 cut(s) 171, 759, 765, 875, 1020
HapII CCGG 3 cut(s) 165, 993, 1021
HgaI GACGC 1 cut(s) 287
HhaI GCGC 1 cut(s) 88
Hin1II CATG 7 cut(s) 326, 473, 554, 734, 833, 910, 946
Hin6I GCGC 1 cut(s) 86
HinP1I GCGC 1 cut(s) 86
HincII GTYRAC 3 cut(s) 159, 277, 314
HindII GTYRAC 3 cut(s) 159, 277, 314
HinfI GANTC 6 cut(s) 24, 652, 708, 743, 878, 923
HpaII CCGG 3 cut(s) 165, 993, 1021
HphI GGTGA 3 cut(s) 19, 705, 1007
Hpy166II GTNNAC 7 cut(s) 159, 277, 286, 314, 349, 960, 1128
Hpy188I TCNGA 8 cut(s) 19, 153, 202, 483, 657, 707, 748, 883
Hpy188III TCNNGA 5 cut(s) 434, 649, 887, 907, 1145
Hpy8I GTNNAC 7 cut(s) 159, 277, 286, 314, 349, 960, 1128
Hpy99I CGWCG 1 cut(s) 281
HpyAV CCTTC 2 cut(s) 14, 182
HpyCH4III ACNGT 2 cut(s) 638, 985
HpyCH4IV ACGT 2 cut(s) 223, 804
HpyCH4V TGCA 5 cut(s) 322, 326, 632, 642, 770
HpyF10VI GCNNNNNNNGC 7 cut(s) 287, 296, 332, 515, 524, 686, 790
HpyF3I CTNAG 4 cut(s) 150, 447, 480, 837
HpySE526I ACGT 2 cut(s) 223, 804
Hsp92II CATG 7 cut(s) 326, 473, 554, 734, 833, 910, 946
HspAI GCGC 1 cut(s) 86
Ksp22I TGATCA 2 cut(s) 574, 883
Kzo9I GATC 5 cut(s) 135, 546, 574, 601, 883
LmnI GCTCC 2 cut(s) 112, 1075
Lsp1109I GCAGC 1 cut(s) 493
LweI GCATC 2 cut(s) 724, 988
MaeI CTAG 4 cut(s) 357, 761, 948, 971
MaeII ACGT 2 cut(s) 223, 804
MaeIII GTNAC 1 cut(s) 832
MalI GATC 5 cut(s) 137, 548, 576, 603, 885
MboI GATC 5 cut(s) 135, 546, 574, 601, 883
MboII GAAGA 1 cut(s) 369
MfeI CAATTG 1 cut(s) 753
MflI RGATCY 1 cut(s) 546
MhlI GDGCHC 1 cut(s) 109
MluCI AATT 8 cut(s) 117, 411, 540, 578, 644, 753, 902, 1024
MlyI GAGTC 3 cut(s) 18, 737, 887
MmeI TCCRAC 2 cut(s) 225, 771
MseI TTAA 5 cut(s) 255, 512, 584, 597, 1059
MspI CCGG 3 cut(s) 165, 993, 1021
MspR9I CCNGG 2 cut(s) 165, 231
MunI CAATTG 1 cut(s) 753
Mva1269I GAATGC 1 cut(s) 1072
MvaI CCWGG 1 cut(s) 231
MwoI GCNNNNNNNGC 7 cut(s) 287, 296, 332, 515, 524, 686, 790
NciI CCSGG 1 cut(s) 165
NdeI CATATG 1 cut(s) 1015
NdeII GATC 5 cut(s) 135, 546, 574, 601, 883
NlaIII CATG 7 cut(s) 326, 473, 554, 734, 833, 910, 946
NlaIV GGNNCC 1 cut(s) 298
NmeAIII GCCGAG 1 cut(s) 901
NspI RCATGY 1 cut(s) 326
PaeI GCATGC 1 cut(s) 326
PagI TCATGA 1 cut(s) 906
PceI AGGCCT 1 cut(s) 765
PctI GAATGC 1 cut(s) 1072
PfeI GAWTC 3 cut(s) 652, 708, 923
PkrI GCNGC 3 cut(s) 170, 508, 556
Ple19I CGATCG 1 cut(s) 604
PleI GAGTC 3 cut(s) 18, 737, 886
PmaCI CACGTG 1 cut(s) 224
PmlI CACGTG 1 cut(s) 224
PpsI GAGTC 3 cut(s) 18, 737, 886
Ppu21I YACGTR 1 cut(s) 224
Psp124BI GAGCTC 1 cut(s) 109
Psp6I CCWGG 1 cut(s) 229
PspCI CACGTG 1 cut(s) 224
PspFI CCCAGC 1 cut(s) 212
PspGI CCWGG 1 cut(s) 229
PspN4I GGNNCC 1 cut(s) 298
PspPI GGNCC 1 cut(s) 935
PsuI RGATCY 1 cut(s) 546
PvuI CGATCG 1 cut(s) 604
RsaI GTAC 1 cut(s) 1127
RsaNI GTAC 1 cut(s) 1126
SacI GAGCTC 1 cut(s) 109
SalI GTCGAC 1 cut(s) 275
SaqAI TTAA 5 cut(s) 255, 512, 584, 597, 1059
SatI GCNGC 3 cut(s) 169, 507, 555
Sau3AI GATC 5 cut(s) 135, 546, 574, 601, 883
Sau96I GGNCC 1 cut(s) 935
SchI GAGTC 3 cut(s) 18, 737, 887
ScrFI CCNGG 2 cut(s) 165, 231
SduI GDGCHC 1 cut(s) 109
SfaNI GCATC 2 cut(s) 724, 988
SfcI CTRYAG 1 cut(s) 1116
SinI GGWCC 1 cut(s) 935
SmlI CTYRAG 1 cut(s) 432
SmoI CTYRAG 1 cut(s) 432
SphI GCATGC 1 cut(s) 326
Sse9I AATT 8 cut(s) 117, 411, 540, 578, 644, 753, 902, 1024
SseBI AGGCCT 1 cut(s) 765
SsiI CCGC 2 cut(s) 168, 554
SspMI CTAG 4 cut(s) 357, 761, 948, 971
SstI GAGCTC 1 cut(s) 109
StuI AGGCCT 1 cut(s) 765
StyD4I CCNGG 2 cut(s) 163, 229
StyI CCWWGG 1 cut(s) 760
TaaI ACNGT 2 cut(s) 638, 985
TaiI ACGT 2 cut(s) 226, 807
TaqI TCGA 7 cut(s) 103, 138, 276, 454, 462, 523, 604
TasI AATT 8 cut(s) 117, 411, 540, 578, 644, 753, 902, 1024
TauI GCSGC 2 cut(s) 171, 557
TfiI GAWTC 3 cut(s) 652, 708, 923
Tru1I TTAA 5 cut(s) 255, 512, 584, 597, 1059
Tru9I TTAA 5 cut(s) 255, 512, 584, 597, 1059
TscAI CASTG 1 cut(s) 777
TseI GCWGC 1 cut(s) 506
TspDTI ATGAA 5 cut(s) 261, 486, 627, 895, 931
TspGWI ACGGA 2 cut(s) 755, 879
TspRI CASTG 1 cut(s) 777
VpaK11BI GGWCC 1 cut(s) 935
XapI RAATTY 4 cut(s) 117, 411, 644, 1024
XceI RCATGY 1 cut(s) 326
XmaJI CCTAGG 1 cut(s) 760
XmiI GTMKAC 1 cut(s) 276
XspI CTAG 4 cut(s) 357, 761, 948, 971
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.