RLG00000016507

12-oxophytodienoate reductase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
7171502 .. 7173306
1805 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016507

Sequence Viewer

Length: 1182 bp
ATGGCAGATTCCTCAGTTACTCTCTTCTCTCCTATCAAGATGGCCAAGTTCAATCTCTCTCACAGGGTTGTACTTGCGCCGATGACGCGGTGCCGAGCCTTGAACGGAGTCCCGAACCCTGCCCTGGCGGATTACTACTCTCAGCGGTCAACCCCCGGCGGCTTTCTCATCAGCGAAGGCACTTTGGTCTCTGACACAGCCGCCGGGTTCCCACATGTTCCTGGGATTTTCTCGGATGAACAGGTTGAGGCATGGAAGAAGGTAGTCGACGCCGTTCACGCGAAAGGAGCCATTATTTTCTGTCAGCTATGGCATGTGGGTCGTGCTTCCCATGGAGTTTACCAACCTGGTGGGGGATCGCCAATTTCTTCAACCAACAATCCCATTTCAAAGAGGTGGAAAATTCTCTTGCCAGATGGGTCTCATGGCACTTACCCTCAGCCTCAACGCCTTGAAATACATGAAATTCCCCACATTGTTGAGCAGTATCGCCGTGCTGCGGTGAATGCCATTCGAGCAGGTTTTGATGGAATTGAGATCCATGGGGCACATGGCTATCTAATTGATCAATTCTTGAAAGATGGGATCAACGATCGAACTGATGAGTATGGTGGGTCGCTTGCAAATCGCTGCAAATTCTTGATTCAAATTGTTCAAGCAGTAGTTGAAGCCATTGGTGCTGATAGAGTTGGTGTCAGAGTCTCACCAGCTATTGATCACCTTGATGCTATGGACTCCGACCCAGTTAGCCTAGGCTTTGCTGTGATTGAAAGGCTTAACAAGCTTCAACAGAACATAGGCTCAAAGCTCACATACCTTCATGTGACTCAGCCTCGTTACGCTGCCTATGGTCAAGCAGAATCGGGCAAACATGGTAGTGATCAAGACGAAGCAGAATTTATGAGGACTCTGAGAAAAGCTTATCAAGGTACATTCATGGCTAGTGGAGGTTTTACTAGAGAGCTAGGAATGGAAGCTGTGGCTTCTGGTGATGCTGATTTAGTGTCGTACGGTCGCTATTTTATCTCAAACCCCGACTTGGTTTTGAGATTTAAGCTGAATGCTCCCTTGACTAAGTATGTCAGGAAGACTTTTTACACCCAAGACCCTGTTGTTGGGTACACAGATTACCCTTTTCTGAACAACACAAGTTTTAAAGAGCAAGCAGTCTCCCGCCTTTGA

Protein Analysis

394

Amino Acids

43.22

Weight (kDa)

7.77

Isoelectric Point (pI)

34.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Oxidored_FMN PF00724 8 - 355 2.2e-84 NADH:flavin oxidoreductase / NADH oxidase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 509
AccB1I GGYRCC 1 cut(s) 90
AccI GTMKAC 1 cut(s) 267
AccII CGCG 2 cut(s) 88, 281
AciI CCGC 7 cut(s) 88, 128, 145, 159, 201, 500, 1174
AclWI GGATC 3 cut(s) 364, 532, 593
AcoI YGGCCR 1 cut(s) 42
AcsI RAATTY 4 cut(s) 402, 465, 635, 896
AcyI GRCGYC 1 cut(s) 270
AfaI GTAC 4 cut(s) 72, 931, 1010, 1121
AfiI CCNNNNNNNGG 5 cut(s) 124, 353, 499, 1039, 1115
AflIII ACRYGT 1 cut(s) 214
AjnI CCWGG 3 cut(s) 123, 220, 346
AluBI AGCT 8 cut(s) 307, 710, 784, 808, 920, 964, 977, 1057
AluI AGCT 8 cut(s) 307, 710, 784, 808, 920, 964, 977, 1057
Alw26I GTCTC 4 cut(s) 193, 426, 706, 1174
AlwI GGATC 3 cut(s) 364, 532, 593
AoxI GGCC 1 cut(s) 42
ApeKI GCWGC 3 cut(s) 497, 630, 842
ApoI RAATTY 4 cut(s) 402, 465, 635, 896
AspA2I CCTAGG 1 cut(s) 751
AspLEI GCGC 1 cut(s) 79
AsuC2I CCSGG 2 cut(s) 156, 205
AsuHPI GGTGA 4 cut(s) 514, 696, 710, 1001
AvrII CCTAGG 1 cut(s) 751
BaeGI GKGCMC 1 cut(s) 550
BalI TGGCCA 1 cut(s) 44
BanI GGYRCC 1 cut(s) 90
BarI GAAGNNNNNNTAC 2 cut(s) 1079, 1111
BbsI GAAGAC 1 cut(s) 1094
BbvCI CCTCAGC 1 cut(s) 438
BbvI GCAGC 3 cut(s) 484, 617, 829
BccI CCATC 4 cut(s) 34, 410, 521, 575
BceAI ACGGC 2 cut(s) 257, 477
BcgI CGANNNNNNTGC 2 cut(s) 302, 336
BciT130I CCWGG 3 cut(s) 125, 222, 348
BclI TGATCA 3 cut(s) 565, 715, 880
BcnI CCSGG 2 cut(s) 156, 205
BcoDI GTCTC 4 cut(s) 193, 426, 706, 1174
BfaI CTAG 4 cut(s) 752, 942, 957, 965
BfuAI ACCTGC 1 cut(s) 509
BisI GCNGC 5 cut(s) 160, 201, 498, 631, 843
BlnI CCTAGG 1 cut(s) 751
BlsI GCNGC 5 cut(s) 161, 202, 499, 632, 844
Bme1390I CCNGG 5 cut(s) 125, 156, 205, 222, 348
BmiI GGNNCC 3 cut(s) 92, 209, 289
BmrFI CCNGG 5 cut(s) 125, 156, 205, 222, 348
BmrI ACTGGG 1 cut(s) 737
BmsI GCATC 2 cut(s) 715, 982
BmuI ACTGGG 1 cut(s) 737
BpiI GAAGAC 1 cut(s) 1094
Bpu10I CCTNAGC 1 cut(s) 438
BpuMI CCSGG 2 cut(s) 156, 205
BsaHI GRCGYC 1 cut(s) 270
BsaI GGTCTC 2 cut(s) 193, 426
BsaJI CCNNGG 6 cut(s) 123, 154, 221, 331, 541, 751
Bsc4I CCNNNNNNNGG 5 cut(s) 124, 353, 499, 1039, 1115
Bse1I ACTGG 1 cut(s) 743
BseBI CCWGG 3 cut(s) 125, 222, 348
BseDI CCNNGG 6 cut(s) 123, 154, 221, 331, 541, 751
BseGI GGATG 1 cut(s) 241
BseLI CCNNNNNNNGG 5 cut(s) 124, 353, 499, 1039, 1115
BseMII CTCAG 5 cut(s) 27, 155, 452, 842, 902
BseNI ACTGG 1 cut(s) 743
BseSI GKGCMC 1 cut(s) 550
BseXI GCAGC 3 cut(s) 484, 617, 829
Bsh1236I CGCG 2 cut(s) 88, 281
Bsh1285I CGRYCG 2 cut(s) 595, 1015
BshFI GGCC 1 cut(s) 44
BshNI GGYRCC 1 cut(s) 90
BsiEI CGRYCG 2 cut(s) 595, 1015
BsiSI CCGG 2 cut(s) 156, 204
BsiWI CGTACG 1 cut(s) 1008
BslFI GGGAC 1 cut(s) 95
BslI CCNNNNNNNGG 5 cut(s) 124, 353, 499, 1039, 1115
BsmAI GTCTC 4 cut(s) 193, 426, 706, 1174
BsmFI GGGAC 1 cut(s) 95
BsmI GAATGC 2 cut(s) 511, 1066
BsnI GGCC 1 cut(s) 44
Bso31I GGTCTC 2 cut(s) 193, 426
Bsp1286I GDGCHC 1 cut(s) 550
Bsp143I GATC 7 cut(s) 356, 537, 565, 585, 592, 715, 880
Bsp19I CCATGG 2 cut(s) 331, 541
BspACI CCGC 7 cut(s) 88, 128, 145, 159, 201, 500, 1174
BspANI GGCC 1 cut(s) 44
BspCNI CTCAG 5 cut(s) 26, 154, 451, 841, 903
BspFNI CGCG 2 cut(s) 88, 281
BspLI GGNNCC 3 cut(s) 92, 209, 289
BspMI ACCTGC 1 cut(s) 509
BspPI GGATC 3 cut(s) 364, 532, 593
BspT107I GGYRCC 1 cut(s) 90
BspTNI GGTCTC 2 cut(s) 193, 426
BsrI ACTGG 1 cut(s) 743
BssECI CCNNGG 6 cut(s) 123, 154, 221, 331, 541, 751
BssMI GATC 7 cut(s) 356, 537, 565, 585, 592, 715, 880
BssNI GRCGYC 1 cut(s) 270
BssT1I CCWWGG 3 cut(s) 331, 541, 751
Bst2UI CCWGG 3 cut(s) 125, 222, 348
Bst4CI ACNGT 1 cut(s) 1013
Bst6I CTCTTC 1 cut(s) 29
BstACI GRCGYC 1 cut(s) 270
BstC8I GCNNGC 2 cut(s) 621, 1164
BstDEI CTNAG 6 cut(s) 13, 141, 438, 828, 911, 1074
BstDSI CCRYGG 2 cut(s) 331, 541
BstF5I GGATG 1 cut(s) 241
BstFNI CGCG 2 cut(s) 88, 281
BstHHI GCGC 1 cut(s) 79
BstKTI GATC 7 cut(s) 359, 540, 568, 588, 595, 718, 883
BstMAI GTCTC 4 cut(s) 193, 426, 706, 1174
BstMBI GATC 7 cut(s) 356, 537, 565, 585, 592, 715, 880
BstMCI CGRYCG 2 cut(s) 595, 1015
BstMWI GCNNNNNNNGC 7 cut(s) 85, 278, 287, 506, 515, 677, 781
BstNI CCWGG 3 cut(s) 125, 222, 348
BstNSI RCATGY 2 cut(s) 218, 317
BstSCI CCNGG 5 cut(s) 123, 154, 203, 220, 346
BstSLI GKGCMC 1 cut(s) 550
BstUI CGCG 2 cut(s) 88, 281
BstV1I GCAGC 3 cut(s) 484, 617, 829
BstV2I GAAGAC 1 cut(s) 1094
BstX2I RGATCY 1 cut(s) 537
BstXI CCANNNNNNTGG 1 cut(s) 350
BstYI RGATCY 1 cut(s) 537
BsuRI GGCC 1 cut(s) 44
BtgI CCRYGG 2 cut(s) 331, 541
BtsCI GGATG 1 cut(s) 241
BveI ACCTGC 1 cut(s) 509
Cac8I GCNNGC 2 cut(s) 621, 1164
CfoI GCGC 1 cut(s) 79
CseI GACGC 2 cut(s) 94, 278
CsiI ACCWGGT 1 cut(s) 346
Csp6I GTAC 4 cut(s) 71, 930, 1009, 1120
CviQI GTAC 4 cut(s) 71, 930, 1009, 1120
DdeI CTNAG 6 cut(s) 13, 141, 438, 828, 911, 1074
DpnI GATC 7 cut(s) 358, 539, 567, 587, 594, 717, 882
DpnII GATC 7 cut(s) 356, 537, 565, 585, 592, 715, 880
DraI TTTAAA 1 cut(s) 1156
EaeI YGGCCR 1 cut(s) 42
Eam1104I CTCTTC 1 cut(s) 29
EarI CTCTTC 1 cut(s) 29
EciI GGCGGA 1 cut(s) 143
Eco130I CCWWGG 3 cut(s) 331, 541, 751
Eco31I GGTCTC 2 cut(s) 193, 426
EcoRII CCWGG 3 cut(s) 123, 220, 346
EcoT14I CCWWGG 3 cut(s) 331, 541, 751
ErhI CCWWGG 3 cut(s) 331, 541, 751
FaqI GGGAC 1 cut(s) 95
FbaI TGATCA 3 cut(s) 565, 715, 880
FblI GTMKAC 1 cut(s) 267
Fnu4HI GCNGC 5 cut(s) 160, 201, 498, 631, 843
FokI GGATG 1 cut(s) 248
Fsp4HI GCNGC 5 cut(s) 160, 201, 498, 631, 843
FspBI CTAG 4 cut(s) 752, 942, 957, 965
GlaI GCGC 1 cut(s) 78
GluI GCNGC 5 cut(s) 160, 201, 498, 631, 843
HaeIII GGCC 1 cut(s) 44
HapII CCGG 2 cut(s) 156, 204
HgaI GACGC 2 cut(s) 94, 278
HhaI GCGC 1 cut(s) 79
Hin1I GRCGYC 1 cut(s) 270
Hin6I GCGC 1 cut(s) 77
HinP1I GCGC 1 cut(s) 77
HincII GTYRAC 2 cut(s) 150, 268
HindII GTYRAC 2 cut(s) 150, 268
HindIII AAGCTT 2 cut(s) 782, 918
HinfI GANTC 8 cut(s) 8, 108, 643, 699, 734, 826, 860, 907
HpaII CCGG 2 cut(s) 156, 204
HphI GGTGA 4 cut(s) 514, 696, 710, 1001
Hpy166II GTNNAC 5 cut(s) 150, 268, 277, 340, 1122
Hpy188I TCNGA 6 cut(s) 193, 235, 698, 739, 912, 1140
Hpy188III TCNNGA 6 cut(s) 37, 112, 574, 640, 884, 1084
Hpy8I GTNNAC 5 cut(s) 150, 268, 277, 340, 1122
Hpy99I CGWCG 1 cut(s) 272
HpyAV CCTTC 3 cut(s) 170, 253, 827
HpyCH4III ACNGT 1 cut(s) 1013
HpyCH4V TGCA 2 cut(s) 623, 633
HpyF10VI GCNNNNNNNGC 7 cut(s) 85, 278, 287, 506, 515, 677, 781
HpyF3I CTNAG 6 cut(s) 13, 141, 438, 828, 911, 1074
Hsp92I GRCGYC 1 cut(s) 270
HspAI GCGC 1 cut(s) 77
Ksp22I TGATCA 3 cut(s) 565, 715, 880
Kzo9I GATC 7 cut(s) 356, 537, 565, 585, 592, 715, 880
LmnI GCTCC 2 cut(s) 287, 1069
Lsp1109I GCAGC 3 cut(s) 484, 617, 829
LweI GCATC 2 cut(s) 715, 982
MabI ACCWGGT 1 cut(s) 346
MaeI CTAG 4 cut(s) 752, 942, 957, 965
MaeIII GTNAC 3 cut(s) 16, 823, 836
MalI GATC 7 cut(s) 358, 539, 567, 587, 594, 717, 882
MboI GATC 7 cut(s) 356, 537, 565, 585, 592, 715, 880
MboII GAAGA 4 cut(s) 16, 268, 360, 1099
MflI RGATCY 1 cut(s) 537
MhlI GDGCHC 1 cut(s) 550
MlsI TGGCCA 1 cut(s) 44
MluCI AATT 9 cut(s) 363, 402, 465, 531, 561, 569, 635, 648, 896
MluNI TGGCCA 1 cut(s) 44
MlyI GAGTC 5 cut(s) 117, 708, 728, 820, 901
MmeI TCCRAC 1 cut(s) 762
MnlI CCTC 8 cut(s) 22, 241, 387, 447, 453, 843, 897, 941
Mox20I TGGCCA 1 cut(s) 44
MscI TGGCCA 1 cut(s) 44
MseI TTAA 3 cut(s) 777, 1053, 1155
MslI CAYNNNNRTG 2 cut(s) 723, 876
Msp20I TGGCCA 1 cut(s) 44
MspA1I CMGCKG 1 cut(s) 145
MspI CCGG 2 cut(s) 156, 204
MspR9I CCNGG 5 cut(s) 125, 156, 205, 222, 348
Mva1269I GAATGC 2 cut(s) 511, 1066
MvaI CCWGG 3 cut(s) 125, 222, 348
MvnI CGCG 2 cut(s) 88, 281
MwoI GCNNNNNNNGC 7 cut(s) 85, 278, 287, 506, 515, 677, 781
NciI CCSGG 2 cut(s) 156, 205
NcoI CCATGG 2 cut(s) 331, 541
NdeII GATC 7 cut(s) 356, 537, 565, 585, 592, 715, 880
NlaIV GGNNCC 3 cut(s) 92, 209, 289
NmeAIII GCCGAG 1 cut(s) 119
NmuCI GTSAC 1 cut(s) 823
NspI RCATGY 2 cut(s) 218, 317
PciI ACATGT 1 cut(s) 214
PctI GAATGC 2 cut(s) 511, 1066
PfeI GAWTC 3 cut(s) 8, 643, 860
Pfl23II CGTACG 1 cut(s) 1008
PkrI GCNGC 5 cut(s) 161, 202, 499, 632, 844
Ple19I CGATCG 1 cut(s) 595
PleI GAGTC 5 cut(s) 116, 707, 728, 820, 901
PpsI GAGTC 5 cut(s) 116, 707, 728, 820, 901
PscI ACATGT 1 cut(s) 214
Psp6I CCWGG 3 cut(s) 123, 220, 346
PspGI CCWGG 3 cut(s) 123, 220, 346
PspLI CGTACG 1 cut(s) 1008
PspN4I GGNNCC 3 cut(s) 92, 209, 289
PsuI RGATCY 1 cut(s) 537
PvuI CGATCG 1 cut(s) 595
RsaI GTAC 4 cut(s) 72, 931, 1010, 1121
RsaNI GTAC 4 cut(s) 71, 930, 1009, 1120
RseI CAYNNNNRTG 2 cut(s) 723, 876
SalI GTCGAC 1 cut(s) 266
SaqAI TTAA 3 cut(s) 777, 1053, 1155
SatI GCNGC 5 cut(s) 160, 201, 498, 631, 843
Sau3AI GATC 7 cut(s) 356, 537, 565, 585, 592, 715, 880
SchI GAGTC 5 cut(s) 117, 708, 728, 820, 901
ScrFI CCNGG 5 cut(s) 125, 156, 205, 222, 348
SduI GDGCHC 1 cut(s) 550
SexAI ACCWGGT 1 cut(s) 346
SfaNI GCATC 2 cut(s) 715, 982
SmiMI CAYNNNNRTG 2 cut(s) 723, 876
Sse9I AATT 9 cut(s) 363, 402, 465, 531, 561, 569, 635, 648, 896
SsiI CCGC 7 cut(s) 88, 128, 145, 159, 201, 500, 1174
SspMI CTAG 4 cut(s) 752, 942, 957, 965
StyD4I CCNGG 5 cut(s) 123, 154, 203, 220, 346
StyI CCWWGG 3 cut(s) 331, 541, 751
TaaI ACNGT 1 cut(s) 1013
TaqI TCGA 3 cut(s) 267, 514, 595
TasI AATT 9 cut(s) 363, 402, 465, 531, 561, 569, 635, 648, 896
TatI WGTACW 1 cut(s) 70
TauI GCSGC 2 cut(s) 162, 203
TfiI GAWTC 3 cut(s) 8, 643, 860
Tru1I TTAA 3 cut(s) 777, 1053, 1155
Tru9I TTAA 3 cut(s) 777, 1053, 1155
TseFI GTSAC 1 cut(s) 823
TseI GCWGC 3 cut(s) 497, 630, 842
Tsp45I GTSAC 1 cut(s) 823
TspDTI ATGAA 4 cut(s) 252, 477, 809, 925
TspGWI ACGGA 1 cut(s) 120
XapI RAATTY 4 cut(s) 402, 465, 635, 896
XceI RCATGY 2 cut(s) 218, 317
XcmI CCANNNNNNNNNTGG 1 cut(s) 548
XmaJI CCTAGG 1 cut(s) 751
XmiI GTMKAC 1 cut(s) 267
XspI CTAG 4 cut(s) 752, 942, 957, 965
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.