Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0000870

Physical Location & Seq

Genomic Coordinates Forward (+)

4490742 .. 4491641

Gene Structure 900 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g08451.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGGGGATTCTGCATCAGAAGGACTCACTCTGTTCTCTCCTTACAAAATGGGCAGCTTCAATCTCTCGCACAGGGTGGTGCTTGCGCCAATGGCAAGGTGTCGAGCACCGAACGAAATTCCGCAGCCAGCTATGGTCGAGTATTATTCTCAGAGGTCAACCCCCGGCGGCCTTCTTATCGCCGAAGCCACTACGCTCTCCAACACGAGTGCTGGGTGTCCACGTGTTCCAGGGATTTACAAAGATGAACAGGTTAAGGCATGGAAGAAGGTGGTCGACGCCGTTCATGCCAAAGGTGCCATTATTTTCTGTCAACTGTGGCATGCAGGTCGTGCTTCTCATCAAGTTTACCAACCTGGTGGGGGTTCGCCGATTTCTTCAACCAACAATCCCATATCAAATAGATGGAAAATTCCATTGCCTGATGGGTCTCAAGACAGTACTCACCCTCAGCCTCGCGCCTTGAAACCCAAGAAATACCTCACATTGTTGAGCAGCATCGTGGCGCTGCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009605 GO:0009607 GO:0009620 GO:0009694 GO:0009695 GO:0009791 GO:0009908 GO:0009987 GO:0010035 GO:0010193 GO:0010817 GO:0016053 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0019752 GO:0022414 GO:0031407 GO:0031408 GO:0032501 GO:0032502 GO:0032787 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042579 GO:0042802 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046677 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0055114 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0090567 GO:0099402 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

172

Amino Acids

18.48

Weight (kDa)

9.6

Isoelectric Point (pI)

43.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_FMN	PF00724	11 - 130	2.9e-30	NADH:flavin oxidoreductase / NADH oxidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06050 AT2G06050 AT2G06050
fragaria_vesca	FvH4_1g08451 FvH4_1g08452 FvH4_1g08453 FvH4_1g08454 FvH4_1g08510 FvH4_1g08510 FvH4_1g08510 FvH4_1g08510
malus_domestica	MD00G1142600.v1.1 MD02G1089100.v1.1 MD12G1067300.v1.1 MD15G1216200.v1.1
prunus_persica	Prupe.7G200800_v2.0.a1
pyrus_communis	pycom02g07130 pycom15g19180
rosa_chinensis	RchiOBHm_Chr2g0094561 RchiOBHm_Chr2g0094611 RchiOBHm_Chr2g0094631 RchiOBHm_Chr2g0094641 RchiOBHm_Chr2g0150041 RchiOBHm_Chr7g0211621 RchiOBHm_Chr7g0230281
rosa_laevigata	RLG00000002990 RLG00000016504 RLG00000016506 RLG00000016507 RLG00000020462
rosa_multiflora	Rmu_co8133296.1_g000001 Rmu_co8390375.1_g000001 Rmu_sc0003760.1_g000017 Rmu_sc0004232.1_g000012 Rmu_sc0004359.1_g000033 Rmu_sc0004359.1_g000036 Rmu_sc0006422.1_g000001 Rmu_sc0009445.1_g000018 Rmu_sc0017068.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097490 Rroxscaffold_2G00147030 Rroxscaffold_2G00147040 Rroxscaffold_2G00147050 Rroxscaffold_3G00247670
rosa_rugosa	Rorug02G0045400 Rorug02G0045400 Rorug02G0045600 Rorug02G0045700 Rorug02G0418000 Rorug07G0126300
rosa_samantha	Rh2AG093100 Rh2BG093400 Rh2BG093700 Rh2BG489500 Rh2CG095800 Rh2CG096000 Rh2DG092200 Rh2DG092400 Rh7AG259000 Rh7BG253300 Rh7CG276100 Rh7DG266600
rosa_wichuraiana	Rw0G003550 Rw0G003560 Rw2G038940 Rw7G022140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	317
AccB1I	GGYRCC	1 cut(s)	296
AccI	GTMKAC	1 cut(s)	276
AccII	CGCG	1 cut(s)	459
AciI	CCGC	2 cut(s)	122, 168
AcsI	RAATTY	2 cut(s)	117, 411
AcvI	CACGTG	1 cut(s)	224
AcyI	GRCGYC	1 cut(s)	279
AdeI	CACNNNGTG	1 cut(s)	76
AfaI	GTAC	1 cut(s)	442
AfiI	CCNNNNNNNGG	1 cut(s)	362
AflIII	ACRYGT	1 cut(s)	223
AgsI	TTSAA	3 cut(s)	61, 381, 466
AjnI	CCWGG	2 cut(s)	229, 355
AluBI	AGCT	2 cut(s)	57, 131
AluI	AGCT	2 cut(s)	57, 131
Alw21I	GWGCWC	1 cut(s)	109
Alw26I	GTCTC	1 cut(s)	435
AoxI	GGCC	1 cut(s)	169
ApeKI	GCWGC	4 cut(s)	54, 124, 495, 508
ApoI	RAATTY	2 cut(s)	117, 411
AspLEI	GCGC	3 cut(s)	88, 461, 508
AsuC2I	CCSGG	1 cut(s)	165
AsuHPI	GGTGA	1 cut(s)	437
BanI	GGYRCC	1 cut(s)	296
BauI	CACGAG	1 cut(s)	205
BbrPI	CACGTG	1 cut(s)	224
Bbv12I	GWGCWC	1 cut(s)	109
BbvCI	CCTCAGC	1 cut(s)	450
BbvI	GCAGC	4 cut(s)	66, 136, 495, 507
BccI	CCATC	2 cut(s)	399, 419
BceAI	ACGGC	1 cut(s)	266
BcgI	CGANNNNNNTGC	2 cut(s)	311, 345
BciT130I	CCWGG	2 cut(s)	231, 357
BcnI	CCSGG	1 cut(s)	165
BcoDI	GTCTC	1 cut(s)	435
BfoI	RGCGCY	1 cut(s)	509
BfuAI	ACCTGC	1 cut(s)	317
BisI	GCNGC	5 cut(s)	55, 125, 169, 496, 509
BlsI	GCNGC	5 cut(s)	56, 126, 170, 497, 510
BmcAI	AGTACT	1 cut(s)	442
Bme1390I	CCNGG	3 cut(s)	165, 231, 357
BmiI	GGNNCC	1 cut(s)	298
BmrFI	CCNGG	3 cut(s)	165, 231, 357
BmsI	GCATC	2 cut(s)	23, 507
Bpu10I	CCTNAGC	1 cut(s)	450
BpuEI	CTTGAG	1 cut(s)	417
BpuMI	CCSGG	1 cut(s)	165
BsaAI	YACGTR	1 cut(s)	224
BsaHI	GRCGYC	1 cut(s)	279
BsaI	GGTCTC	1 cut(s)	435
BsaJI	CCNNGG	2 cut(s)	163, 230
Bsc4I	CCNNNNNNNGG	1 cut(s)	362
Bse3DI	GCAATG	1 cut(s)	416
BseBI	CCWGG	2 cut(s)	231, 357
BseDI	CCNNGG	2 cut(s)	163, 230
BseLI	CCNNNNNNNGG	1 cut(s)	362
BseMI	GCAATG	1 cut(s)	416
BseMII	CTCAG	2 cut(s)	164, 464
BseXI	GCAGC	4 cut(s)	66, 136, 495, 507
BseYI	CCCAGC	1 cut(s)	212
Bsh1236I	CGCG	1 cut(s)	459
BshFI	GGCC	1 cut(s)	171
BshNI	GGYRCC	1 cut(s)	296
BsiHKAI	GWGCWC	1 cut(s)	109
BsiSI	CCGG	1 cut(s)	165
BslI	CCNNNNNNNGG	1 cut(s)	362
BsmAI	GTCTC	1 cut(s)	435
BsnI	GGCC	1 cut(s)	171
Bso31I	GGTCTC	1 cut(s)	435
Bsp1286I	GDGCHC	1 cut(s)	109
BspACI	CCGC	2 cut(s)	122, 168
BspANI	GGCC	1 cut(s)	171
BspCNI	CTCAG	2 cut(s)	163, 463
BspFNI	CGCG	1 cut(s)	459
BspLI	GGNNCC	1 cut(s)	298
BspMI	ACCTGC	1 cut(s)	317
BspT107I	GGYRCC	1 cut(s)	296
BspTNI	GGTCTC	1 cut(s)	435
BsrDI	GCAATG	1 cut(s)	416
BssECI	CCNNGG	2 cut(s)	163, 230
BssNI	GRCGYC	1 cut(s)	279
BssSI	CACGAG	1 cut(s)	205
Bst2BI	CACGAG	1 cut(s)	205
Bst2UI	CCWGG	2 cut(s)	231, 357
Bst4CI	ACNGT	2 cut(s)	318, 440
BstACI	GRCGYC	1 cut(s)	279
BstAPI	GCANNNNNTGC	1 cut(s)	332
BstBAI	YACGTR	1 cut(s)	224
BstC8I	GCNNGC	3 cut(s)	84, 129, 324
BstDEI	CTNAG	2 cut(s)	150, 450
BstFNI	CGCG	1 cut(s)	459
BstH2I	RGCGCY	1 cut(s)	509
BstHHI	GCGC	3 cut(s)	88, 461, 508
BstMAI	GTCTC	1 cut(s)	435
BstMWI	GCNNNNNNNGC	4 cut(s)	92, 287, 296, 332
BstNI	CCWGG	2 cut(s)	231, 357
BstNSI	RCATGY	1 cut(s)	326
BstSCI	CCNGG	3 cut(s)	163, 229, 355
BstUI	CGCG	1 cut(s)	459
BstV1I	GCAGC	4 cut(s)	66, 136, 495, 507
BstXI	CCANNNNNNTGG	1 cut(s)	359
BsuRI	GGCC	1 cut(s)	171
BveI	ACCTGC	1 cut(s)	317
Cac8I	GCNNGC	3 cut(s)	84, 129, 324
CfoI	GCGC	3 cut(s)	88, 461, 508
CseI	GACGC	1 cut(s)	287
CsiI	ACCWGGT	1 cut(s)	355
Csp6I	GTAC	1 cut(s)	441
CviAII	CATG	3 cut(s)	261, 287, 323
CviJI	RGCY	6 cut(s)	57, 127, 131, 171, 188, 454
CviKI_1	RGCY	6 cut(s)	57, 127, 131, 171, 188, 454
CviQI	GTAC	1 cut(s)	441
DdeI	CTNAG	2 cut(s)	150, 450
DraIII	CACNNNGTG	1 cut(s)	76
Eco31I	GGTCTC	1 cut(s)	435
Eco72I	CACGTG	1 cut(s)	224
EcoRII	CCWGG	2 cut(s)	229, 355
FaeI	CATG	3 cut(s)	264, 290, 326
FaiI	YATR	6 cut(s)	134, 262, 288, 324, 395, 514
FatI	CATG	3 cut(s)	260, 286, 322
FblI	GTMKAC	1 cut(s)	276
Fnu4HI	GCNGC	5 cut(s)	55, 125, 169, 496, 509
Fsp4HI	GCNGC	5 cut(s)	55, 125, 169, 496, 509
GlaI	GCGC	3 cut(s)	87, 460, 507
GluI	GCNGC	5 cut(s)	55, 125, 169, 496, 509
GsaI	CCCAGC	1 cut(s)	216
HaeII	RGCGCY	1 cut(s)	509
HaeIII	GGCC	1 cut(s)	171
HapII	CCGG	1 cut(s)	165
HgaI	GACGC	1 cut(s)	287
HhaI	GCGC	3 cut(s)	88, 461, 508
Hin1I	GRCGYC	1 cut(s)	279
Hin1II	CATG	3 cut(s)	264, 290, 326
Hin6I	GCGC	3 cut(s)	86, 459, 506
HinP1I	GCGC	3 cut(s)	86, 459, 506
HincII	GTYRAC	3 cut(s)	159, 277, 314
HindII	GTYRAC	3 cut(s)	159, 277, 314
HinfI	GANTC	2 cut(s)	8, 24
HpaII	CCGG	1 cut(s)	165
HphI	GGTGA	1 cut(s)	437
Hpy166II	GTNNAC	5 cut(s)	159, 221, 277, 314, 349
Hpy188I	TCNGA	2 cut(s)	19, 153
Hpy188III	TCNNGA	1 cut(s)	434
Hpy8I	GTNNAC	5 cut(s)	159, 221, 277, 314, 349
Hpy99I	CGWCG	1 cut(s)	281
HpyAV	CCTTC	3 cut(s)	14, 182, 262
HpyCH4III	ACNGT	2 cut(s)	318, 440
HpyCH4IV	ACGT	1 cut(s)	223
HpyCH4V	TGCA	2 cut(s)	14, 326
HpyF10VI	GCNNNNNNNGC	4 cut(s)	92, 287, 296, 332
HpyF3I	CTNAG	2 cut(s)	150, 450
HpySE526I	ACGT	1 cut(s)	223
Hsp92I	GRCGYC	1 cut(s)	279
Hsp92II	CATG	3 cut(s)	264, 290, 326
HspAI	GCGC	3 cut(s)	86, 459, 506
Lsp1109I	GCAGC	4 cut(s)	66, 136, 495, 507
LweI	GCATC	2 cut(s)	23, 507
MabI	ACCWGGT	1 cut(s)	355
MaeII	ACGT	1 cut(s)	223
MboII	GAAGA	2 cut(s)	277, 369
MhlI	GDGCHC	1 cut(s)	109
MluCI	AATT	2 cut(s)	117, 411
MlyI	GAGTC	1 cut(s)	18
MmeI	TCCRAC	1 cut(s)	225
MnlI	CCTC	4 cut(s)	147, 459, 465, 491
MseI	TTAA	1 cut(s)	255
MspI	CCGG	1 cut(s)	165
MspR9I	CCNGG	3 cut(s)	165, 231, 357
MvaI	CCWGG	2 cut(s)	231, 357
MvnI	CGCG	1 cut(s)	459
MwoI	GCNNNNNNNGC	4 cut(s)	92, 287, 296, 332
NciI	CCSGG	1 cut(s)	165
NlaIII	CATG	3 cut(s)	264, 290, 326
NlaIV	GGNNCC	1 cut(s)	298
NspI	RCATGY	1 cut(s)	326
PaeI	GCATGC	1 cut(s)	326
PfeI	GAWTC	1 cut(s)	8
PkrI	GCNGC	5 cut(s)	56, 126, 170, 497, 510
PleI	GAGTC	1 cut(s)	18
PmaCI	CACGTG	1 cut(s)	224
PmlI	CACGTG	1 cut(s)	224
PpsI	GAGTC	1 cut(s)	18
Ppu21I	YACGTR	1 cut(s)	224
Psp6I	CCWGG	2 cut(s)	229, 355
PspCI	CACGTG	1 cut(s)	224
PspFI	CCCAGC	1 cut(s)	212
PspGI	CCWGG	2 cut(s)	229, 355
PspN4I	GGNNCC	1 cut(s)	298
RsaI	GTAC	1 cut(s)	442
RsaNI	GTAC	1 cut(s)	441
SalI	GTCGAC	1 cut(s)	275
SaqAI	TTAA	1 cut(s)	255
SatI	GCNGC	5 cut(s)	55, 125, 169, 496, 509
ScaI	AGTACT	1 cut(s)	442
SchI	GAGTC	1 cut(s)	18
ScrFI	CCNGG	3 cut(s)	165, 231, 357
SduI	GDGCHC	1 cut(s)	109
SexAI	ACCWGGT	1 cut(s)	355
SfaNI	GCATC	2 cut(s)	23, 507
SmlI	CTYRAG	1 cut(s)	432
SmoI	CTYRAG	1 cut(s)	432
SphI	GCATGC	1 cut(s)	326
Sse9I	AATT	2 cut(s)	117, 411
SsiI	CCGC	2 cut(s)	122, 168
StyD4I	CCNGG	3 cut(s)	163, 229, 355
TaaI	ACNGT	2 cut(s)	318, 440
TaiI	ACGT	1 cut(s)	226
TaqI	TCGA	3 cut(s)	103, 138, 276
TasI	AATT	2 cut(s)	117, 411
TatI	WGTACW	1 cut(s)	440
TauI	GCSGC	1 cut(s)	171
TfiI	GAWTC	1 cut(s)	8
Tru1I	TTAA	1 cut(s)	255
Tru9I	TTAA	1 cut(s)	255
TseI	GCWGC	4 cut(s)	54, 124, 495, 508
TspDTI	ATGAA	2 cut(s)	261, 275
XapI	RAATTY	2 cut(s)	117, 411
XceI	RCATGY	1 cut(s)	326
XmiI	GTMKAC	1 cut(s)	276
ZrmI	AGTACT	1 cut(s)	442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.