RchiOBHm_Chr2g0094611

12-oxophytodienoate reductase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
7556544 .. 7559891
3348 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46961

Sequence Viewer

Length: 1209 bp
ATGGCAGATTCTTCATCCACAGGACTCACTCTGTTCTCTCCTTACAAGATGGGCAAGTTCAACCTCGCTCACAGAGTGGTGCTTGCGCCATTGACGAGGTGTCGAGCATTGAACAAAGTTCCTCAGCCATCACTGGTCGAGTACTATTCTCAGAGGTCAACCCCCGGCGGCTTTCTTATCACAGAAGGCACTTCGCCCTCGGACGCAAGCGCTGGGTTTCCACATGTTCCTGGGATTTACACAGACGAACAGGTTGAGGCATGGAAGAAGGTGGTCGACGCGGTTCACGCCAAAGGTGCCATCATTTTCTGTCAACTTTGGCATGTCGGTGGTGCTTCTCATCAAGGTAATTTTGTCACATACATGTTTAAATGGCAGAGCTTTGTTTTGCAATTTTTCAACCTGCTGGGGGATCACCAATTTCTTCAACCAACAACCCCATCTCAAAGAGATGGAAAGTACGTTCTCTTGCCAGATGGGTCTCATGACGCTTACTCTGAACCTCGACGCCTCGAGACCCACGAAATACCCCAGATCGTTGAGCAGTATCGCCACGCTGCCTTGAATGCCATTCGCGCAGGTTTTGATGGAATTGAGATCCATTCTGCACATGGCTACCTTATCGATCAATTCTTGAAAGATGGGATCAACGATCGAACTGATGAGTATGGTGGGTCGCTTGAAAACCGCCGCAAGTTCTTGATCGAAACTGTTCAAGCAGTAGTTGAAGCCGTTGGTGCTGATAGAGTTGCTGTTAGAATCTCACTAGGTATGGATCACCTTGACGCTATTGATTCCGACCCAATTGTCCTAGGCTTGGCAGTGATTGAAAGACTCAACAAGCTTCAACAAAACGTAGGCTCAAAGCTTGCTTATCTTCATGTGATGCCTCGTTTCGCAGCTCATGGACAAGTAGAGTTTGATCAAGACGAAGCTCGCTTCATGAGGACTTTGAGAAACGCTTATGAGGGTACATTCATGGCTAGTGGAGGGTTCACCAGAGAGCTAGGAATGGATGATGTGGCTTCCGATGATACTGATTTGGTGTCATATGGTCGCCAGTTTATCTCAAACCCTGACTTGGTTTTGAGATTTAAGCTGAATGCTCCTTTGAATAAGTATAATAGGGAGACTTTCTACACCCATGACCCTGTTGTTGGGTACACAGACTATCCTTTTCTAAACAGTGAAAGTGTGAAGGAGAATTAG

Protein Analysis

402

Amino Acids

45.04

Weight (kDa)

5.74

Isoelectric Point (pI)

37.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Oxidored_FMN PF00724 11 - 371 2.1e-81 NADH:flavin oxidoreductase / NADH oxidase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 806
Acc36I ACCTGC 2 cut(s) 411, 569
AccB1I GGYRCC 1 cut(s) 296
AccI GTMKAC 1 cut(s) 276
AccII CGCG 2 cut(s) 281, 576
AciI CCGC 4 cut(s) 168, 281, 688, 691
AclWI GGATC 4 cut(s) 420, 592, 653, 783
AcyI GRCGYC 1 cut(s) 508
AdeI CACNNNGTG 1 cut(s) 76
AfaI GTAC 4 cut(s) 143, 461, 973, 1163
AfeI AGCGCT 1 cut(s) 211
AfiI CCNNNNNNNGG 4 cut(s) 409, 817, 1081, 1157
AflIII ACRYGT 2 cut(s) 223, 363
AhdI GACNNNNNGTC 1 cut(s) 99
AjnI CCWGG 1 cut(s) 229
AloI GAACNNNNNNTCC 2 cut(s) 447, 479
AluBI AGCT 7 cut(s) 381, 844, 868, 902, 935, 1006, 1099
AluI AGCT 7 cut(s) 381, 844, 868, 902, 935, 1006, 1099
Alw26I GTCTC 3 cut(s) 486, 509, 1124
AlwI GGATC 4 cut(s) 420, 592, 653, 783
Ama87I CYCGRG 1 cut(s) 512
Aor51HI AGCGCT 1 cut(s) 211
ApeKI GCWGC 2 cut(s) 557, 899
Asp700I GAANNNNTTC 1 cut(s) 711
AspA2I CCTAGG 1 cut(s) 811
AspLEI GCGC 3 cut(s) 88, 212, 578
AsuC2I CCSGG 1 cut(s) 165
AsuHPI GGTGA 3 cut(s) 407, 770, 988
AvaI CYCGRG 1 cut(s) 512
AvrII CCTAGG 1 cut(s) 811
BanI GGYRCC 1 cut(s) 296
BbvCI CCTCAGC 1 cut(s) 123
BbvI GCAGC 2 cut(s) 544, 911
BccI CCATC 8 cut(s) 43, 136, 308, 446, 448, 470, 581, 635
BceAI ACGGC 1 cut(s) 716
BciT130I CCWGG 1 cut(s) 231
BclI TGATCA 1 cut(s) 922
BcnI CCSGG 1 cut(s) 165
BcoDI GTCTC 3 cut(s) 486, 509, 1124
BfaI CTAG 4 cut(s) 767, 812, 984, 1007
BfoI RGCGCY 1 cut(s) 213
BfuAI ACCTGC 2 cut(s) 411, 569
BisI GCNGC 4 cut(s) 169, 558, 691, 900
BlnI CCTAGG 1 cut(s) 811
BlsI GCNGC 4 cut(s) 170, 559, 692, 901
BmcAI AGTACT 1 cut(s) 143
Bme1390I CCNGG 2 cut(s) 165, 231
BmeRI GACNNNNNGTC 1 cut(s) 99
BmeT110I CYCGRG 1 cut(s) 512
BmiI GGNNCC 1 cut(s) 298
BmrFI CCNGG 2 cut(s) 165, 231
BmsI GCATC 1 cut(s) 876
Bpu10I CCTNAGC 1 cut(s) 123
BpuMI CCSGG 1 cut(s) 165
Bsa29I ATCGAT 1 cut(s) 624
BsaHI GRCGYC 1 cut(s) 508
BsaI GGTCTC 2 cut(s) 486, 509
BsaJI CCNNGG 4 cut(s) 163, 198, 230, 811
Bsc4I CCNNNNNNNGG 4 cut(s) 409, 817, 1081, 1157
Bse1I ACTGG 2 cut(s) 138, 1060
BseBI CCWGG 1 cut(s) 231
BseCI ATCGAT 1 cut(s) 624
BseDI CCNNGG 4 cut(s) 163, 198, 230, 811
BseGI GGATG 2 cut(s) 14, 1021
BseLI CCNNNNNNNGG 4 cut(s) 409, 817, 1081, 1157
BseMII CTCAG 2 cut(s) 137, 164
BseNI ACTGG 2 cut(s) 138, 1060
BseXI GCAGC 2 cut(s) 544, 911
BseYI CCCAGC 2 cut(s) 212, 406
BsgI GTGCAG 1 cut(s) 591
Bsh1236I CGCG 2 cut(s) 281, 576
Bsh1285I CGRYCG 1 cut(s) 655
BshNI GGYRCC 1 cut(s) 296
BshVI ATCGAT 1 cut(s) 624
BsiEI CGRYCG 1 cut(s) 655
BsiHKCI CYCGRG 1 cut(s) 512
BsiSI CCGG 1 cut(s) 165
BslI CCNNNNNNNGG 4 cut(s) 409, 817, 1081, 1157
BsmAI GTCTC 3 cut(s) 486, 509, 1124
BsmI GAATGC 2 cut(s) 571, 1108
Bso31I GGTCTC 2 cut(s) 486, 509
BsoBI CYCGRG 1 cut(s) 512
Bsp143I GATC 9 cut(s) 412, 534, 597, 625, 645, 652, 702, 775, 922
BspACI CCGC 4 cut(s) 168, 281, 688, 691
BspCNI CTCAG 2 cut(s) 136, 163
BspDI ATCGAT 1 cut(s) 624
BspFNI CGCG 2 cut(s) 281, 576
BspHI TCATGA 2 cut(s) 484, 942
BspLI GGNNCC 1 cut(s) 298
BspMI ACCTGC 2 cut(s) 411, 569
BspPI GGATC 4 cut(s) 420, 592, 653, 783
BspT107I GGYRCC 1 cut(s) 296
BspTNI GGTCTC 2 cut(s) 486, 509
BsrI ACTGG 2 cut(s) 138, 1060
BssECI CCNNGG 4 cut(s) 163, 198, 230, 811
BssMI GATC 9 cut(s) 412, 534, 597, 625, 645, 652, 702, 775, 922
BssNI GRCGYC 1 cut(s) 508
BssT1I CCWWGG 1 cut(s) 811
Bst2UI CCWGG 1 cut(s) 231
Bst4CI ACNGT 2 cut(s) 712, 1187
BstACI GRCGYC 1 cut(s) 508
BstC8I GCNNGC 4 cut(s) 84, 208, 870, 937
BstDEI CTNAG 2 cut(s) 123, 150
BstF5I GGATG 2 cut(s) 14, 1021
BstFNI CGCG 2 cut(s) 281, 576
BstH2I RGCGCY 1 cut(s) 213
BstHHI GCGC 3 cut(s) 88, 212, 578
BstKTI GATC 9 cut(s) 415, 537, 600, 628, 648, 655, 705, 778, 925
BstMAI GTCTC 3 cut(s) 486, 509, 1124
BstMBI GATC 9 cut(s) 412, 534, 597, 625, 645, 652, 702, 775, 922
BstMCI CGRYCG 1 cut(s) 655
BstMWI GCNNNNNNNGC 5 cut(s) 287, 296, 566, 575, 737
BstNI CCWGG 1 cut(s) 231
BstNSI RCATGY 3 cut(s) 227, 326, 367
BstSCI CCNGG 2 cut(s) 163, 229
BstUI CGCG 2 cut(s) 281, 576
BstV1I GCAGC 2 cut(s) 544, 911
BstX2I RGATCY 1 cut(s) 597
BstYI RGATCY 1 cut(s) 597
Bsu15I ATCGAT 1 cut(s) 624
BsuTUI ATCGAT 1 cut(s) 624
BtsCI GGATG 2 cut(s) 14, 1021
BtsI GCAGTG 1 cut(s) 828
BtsIMutI CAGTG 3 cut(s) 131, 828, 1192
BveI ACCTGC 2 cut(s) 411, 569
Cac8I GCNNGC 4 cut(s) 84, 208, 870, 937
CciI TCATGA 2 cut(s) 484, 942
CfoI GCGC 3 cut(s) 88, 212, 578
ClaI ATCGAT 1 cut(s) 624
CseI GACGC 5 cut(s) 212, 287, 497, 516, 794
Csp6I GTAC 4 cut(s) 142, 460, 972, 1162
CviQI GTAC 4 cut(s) 142, 460, 972, 1162
DdeI CTNAG 2 cut(s) 123, 150
DpnI GATC 9 cut(s) 414, 536, 599, 627, 647, 654, 704, 777, 924
DpnII GATC 9 cut(s) 412, 534, 597, 625, 645, 652, 702, 775, 922
DraI TTTAAA 1 cut(s) 370
DraIII CACNNNGTG 1 cut(s) 76
DrdI GACNNNNNNGTC 1 cut(s) 806
DriI GACNNNNNGTC 1 cut(s) 99
DseDI GACNNNNNNGTC 1 cut(s) 806
Eam1105I GACNNNNNGTC 1 cut(s) 99
Eco130I CCWWGG 1 cut(s) 811
Eco31I GGTCTC 2 cut(s) 486, 509
Eco47III AGCGCT 1 cut(s) 211
Eco88I CYCGRG 1 cut(s) 512
EcoRII CCWGG 1 cut(s) 229
EcoT14I CCWWGG 1 cut(s) 811
ErhI CCWWGG 1 cut(s) 811
FauNDI CATATG 1 cut(s) 1051
FbaI TGATCA 1 cut(s) 922
FblI GTMKAC 1 cut(s) 276
Fnu4HI GCNGC 4 cut(s) 169, 558, 691, 900
FokI GGATG 1 cut(s) 1028
Fsp4HI GCNGC 4 cut(s) 169, 558, 691, 900
FspBI CTAG 4 cut(s) 767, 812, 984, 1007
GlaI GCGC 3 cut(s) 87, 211, 577
GluI GCNGC 4 cut(s) 169, 558, 691, 900
GsaI CCCAGC 2 cut(s) 216, 410
HaeII RGCGCY 1 cut(s) 213
HapII CCGG 1 cut(s) 165
HgaI GACGC 5 cut(s) 212, 287, 497, 516, 794
HhaI GCGC 3 cut(s) 88, 212, 578
Hin1I GRCGYC 1 cut(s) 508
Hin6I GCGC 3 cut(s) 86, 210, 576
HinP1I GCGC 3 cut(s) 86, 210, 576
HincII GTYRAC 3 cut(s) 159, 277, 314
HindII GTYRAC 3 cut(s) 159, 277, 314
HindIII AAGCTT 2 cut(s) 842, 866
HinfI GANTC 5 cut(s) 8, 24, 759, 794, 834
HpaII CCGG 1 cut(s) 165
HphI GGTGA 3 cut(s) 407, 770, 988
Hpy166II GTNNAC 6 cut(s) 159, 277, 286, 314, 996, 1164
Hpy188I TCNGA 5 cut(s) 153, 202, 499, 799, 1030
Hpy188III TCNNGA 6 cut(s) 485, 514, 634, 700, 926, 943
Hpy8I GTNNAC 6 cut(s) 159, 277, 286, 314, 996, 1164
Hpy99I CGWCG 2 cut(s) 281, 510
HpyAV CCTTC 3 cut(s) 179, 262, 1192
HpyCH4III ACNGT 2 cut(s) 712, 1187
HpyCH4IV ACGT 2 cut(s) 462, 855
HpyCH4V TGCA 2 cut(s) 391, 608
HpyF10VI GCNNNNNNNGC 5 cut(s) 287, 296, 566, 575, 737
HpyF3I CTNAG 2 cut(s) 123, 150
HpySE526I ACGT 2 cut(s) 462, 855
Hsp92I GRCGYC 1 cut(s) 508
HspAI GCGC 3 cut(s) 86, 210, 576
Ksp22I TGATCA 1 cut(s) 922
Kzo9I GATC 9 cut(s) 412, 534, 597, 625, 645, 652, 702, 775, 922
LmnI GCTCC 1 cut(s) 1111
Lsp1109I GCAGC 2 cut(s) 544, 911
LweI GCATC 1 cut(s) 876
MaeI CTAG 4 cut(s) 767, 812, 984, 1007
MaeII ACGT 2 cut(s) 462, 855
MaeIII GTNAC 1 cut(s) 355
MalI GATC 9 cut(s) 414, 536, 599, 627, 647, 654, 704, 777, 924
MboI GATC 9 cut(s) 412, 534, 597, 625, 645, 652, 702, 775, 922
MboII GAAGA 4 cut(s) 3, 277, 416, 869
MfeI CAATTG 1 cut(s) 804
MflI RGATCY 1 cut(s) 597
MluCI AATT 7 cut(s) 349, 392, 419, 591, 629, 804, 1204
MlyI GAGTC 2 cut(s) 18, 828
MmeI TCCRAC 1 cut(s) 822
MroXI GAANNNNTTC 1 cut(s) 711
MseI TTAA 2 cut(s) 369, 1095
MslI CAYNNNNRTG 2 cut(s) 327, 362
MspI CCGG 1 cut(s) 165
MspR9I CCNGG 2 cut(s) 165, 231
MunI CAATTG 1 cut(s) 804
Mva1269I GAATGC 2 cut(s) 571, 1108
MvaI CCWGG 1 cut(s) 231
MvnI CGCG 2 cut(s) 281, 576
MwoI GCNNNNNNNGC 5 cut(s) 287, 296, 566, 575, 737
NciI CCSGG 1 cut(s) 165
NdeI CATATG 1 cut(s) 1051
NdeII GATC 9 cut(s) 412, 534, 597, 625, 645, 652, 702, 775, 922
NlaIV GGNNCC 1 cut(s) 298
NmuCI GTSAC 1 cut(s) 355
NspI RCATGY 3 cut(s) 227, 326, 367
PaeR7I CTCGAG 1 cut(s) 512
PagI TCATGA 2 cut(s) 484, 942
PciI ACATGT 2 cut(s) 223, 363
PcsI WCGNNNNNNNCGW 1 cut(s) 519
PctI GAATGC 2 cut(s) 571, 1108
PdmI GAANNNNTTC 1 cut(s) 711
PfeI GAWTC 3 cut(s) 8, 759, 794
PkrI GCNGC 4 cut(s) 170, 559, 692, 901
Ple19I CGATCG 1 cut(s) 655
PleI GAGTC 2 cut(s) 18, 828
PpsI GAGTC 2 cut(s) 18, 828
PscI ACATGT 2 cut(s) 223, 363
Psp6I CCWGG 1 cut(s) 229
PspFI CCCAGC 2 cut(s) 212, 406
PspGI CCWGG 1 cut(s) 229
PspN4I GGNNCC 1 cut(s) 298
PsuI RGATCY 1 cut(s) 597
PvuI CGATCG 1 cut(s) 655
RsaI GTAC 4 cut(s) 143, 461, 973, 1163
RsaNI GTAC 4 cut(s) 142, 460, 972, 1162
RseI CAYNNNNRTG 2 cut(s) 327, 362
SalI GTCGAC 1 cut(s) 275
SaqAI TTAA 2 cut(s) 369, 1095
SatI GCNGC 4 cut(s) 169, 558, 691, 900
Sau3AI GATC 9 cut(s) 412, 534, 597, 625, 645, 652, 702, 775, 922
ScaI AGTACT 1 cut(s) 143
SchI GAGTC 2 cut(s) 18, 828
ScrFI CCNGG 2 cut(s) 165, 231
SfaNI GCATC 1 cut(s) 876
Sfr274I CTCGAG 1 cut(s) 512
SlaI CTCGAG 1 cut(s) 512
SmiMI CAYNNNNRTG 2 cut(s) 327, 362
SmlI CTYRAG 1 cut(s) 512
SmoI CTYRAG 1 cut(s) 512
Sse9I AATT 7 cut(s) 349, 392, 419, 591, 629, 804, 1204
SsiI CCGC 4 cut(s) 168, 281, 688, 691
SspMI CTAG 4 cut(s) 767, 812, 984, 1007
StyD4I CCNGG 2 cut(s) 163, 229
StyI CCWWGG 1 cut(s) 811
TaaI ACNGT 2 cut(s) 712, 1187
TaiI ACGT 2 cut(s) 465, 858
TaqI TCGA 8 cut(s) 103, 138, 276, 505, 513, 624, 655, 705
TasI AATT 7 cut(s) 349, 392, 419, 591, 629, 804, 1204
TatI WGTACW 1 cut(s) 141
TauI GCSGC 2 cut(s) 171, 693
TfiI GAWTC 3 cut(s) 8, 759, 794
Tru1I TTAA 2 cut(s) 369, 1095
Tru9I TTAA 2 cut(s) 369, 1095
TscAI CASTG 3 cut(s) 138, 828, 1192
TseFI GTSAC 1 cut(s) 355
TseI GCWGC 2 cut(s) 557, 899
Tsp45I GTSAC 1 cut(s) 355
TspDTI ATGAA 3 cut(s) 869, 931, 967
TspRI CASTG 3 cut(s) 138, 828, 1192
XceI RCATGY 3 cut(s) 227, 326, 367
XcmI CCANNNNNNNNNTGG 1 cut(s) 608
XhoI CTCGAG 1 cut(s) 512
XmaJI CCTAGG 1 cut(s) 811
XmiI GTMKAC 1 cut(s) 276
XmnI GAANNNNTTC 1 cut(s) 711
XspI CTAG 4 cut(s) 767, 812, 984, 1007
ZrmI AGTACT 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.