Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0015298

Physical Location & Seq

Genomic Coordinates Forward (+)

27670116 .. 27673465

Gene Structure 3350 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG276000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGAGGAAGAAAGGCAGTCTCTCTCTTCTGATCCTACACCAACGCATCATAATCTTCGTCCTCCCTACCTTACTCTTGGGCTGCGATCGCCGTTGGGATTCAAACAAGGATTACTATTGTCTCTGGCAGCAGAAGCCATAAAGATTACAATGGAATGGGCGGACAAGGCTGTTGGATTTCTATTGTCGTATATCAGTTTATCTATATTCACTTATTACACCTTTTGGGTCATTATTCTGCCATTTGTGAACAGTGATCACTTTATCCACCGGTATTTTTTACCCCAAGAATATGCCATCTTAATCCCTGTATTTGCTGGCATGGTGCTTCTTTGCTTTCTCTCCATATTCATTGGTACTCTGGACTTGCTGGCAGAGCTCCAGATAGAACTGAGTGATGCAAGTATCATAGTGAAGTTTGTTGAAGATGTGGGTCGCCTCGTCGGGATCCAACCAGTTTTGAATGATTCCATTTTGGCAGAGTATATCAATGTCCTTGGTAGTGCTGATGAGGCAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006066 GO:0006464 GO:0006486 GO:0006493 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006720 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009247 GO:0009987 GO:0012505 GO:0016020 GO:0016093 GO:0019348 GO:0019538 GO:0019637 GO:0030234 GO:0031501 GO:0031984 GO:0032991 GO:0033185 GO:0034645 GO:0035268 GO:0035269 GO:0036211 GO:0042157 GO:0042158 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0050790 GO:0065007 GO:0065009 GO:0070085 GO:0071704 GO:0090407 GO:0097502 GO:0098772 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1902494 GO:1903509 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00510 ko00563 ko01100 map00510 map00563 map01100

Pfam Domains

Protein Families

DPM2

Protein Analysis

173

Amino Acids

19.39

Weight (kDa)

4.62

Isoelectric Point (pI)

42.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPM2	PF07297	54 - 120	2.3e-28	Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015298)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74340 AT1G74340
malus_domestica	MD06G1025500.v1.1 MD16G1280900.v1.1
prunus_persica	Prupe.5G029600_v2.0.a1
pyrus_communis	pycom06g02060 pycom06g02070
rosa_chinensis	RchiOBHm_Chr7g0211611
rosa_laevigata	RLG00000002991
rosa_multiflora	Rmu_sc0003760.1_g000018 Rmu_sc0004232.1_g000020
rosa_roxburghii	Rroxscaffold_3G00247680
rosa_rugosa	Rorug07G0126300
rosa_samantha	Rh7AG258900 Rh7CG276000
rosa_wichuraiana	Rw7G022130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	161
AclWI	GGATC	3 cut(s)	26, 442, 455
AfaI	GTAC	1 cut(s)	358
AgeI	ACCGGT	1 cut(s)	270
AgsI	TTSAA	3 cut(s)	103, 425, 463
AluBI	AGCT	1 cut(s)	379
AluI	AGCT	1 cut(s)	379
Alw21I	GWGCWC	1 cut(s)	381
Alw26I	GTCTC	2 cut(s)	24, 126
AlwI	GGATC	3 cut(s)	26, 442, 455
ApeKI	GCWGC	2 cut(s)	82, 128
AsiGI	ACCGGT	1 cut(s)	270
AsiSI	GCGATCGC	1 cut(s)	89
BamHI	GGATCC	1 cut(s)	447
BanII	GRGCYC	1 cut(s)	381
Bbv12I	GWGCWC	1 cut(s)	381
BbvI	GCAGC	2 cut(s)	69, 140
BccI	CCATC	1 cut(s)	305
BceAI	ACGGC	1 cut(s)	76
BclI	TGATCA	1 cut(s)	256
BcoDI	GTCTC	2 cut(s)	24, 126
BisI	GCNGC	2 cut(s)	83, 129
BlsI	GCNGC	2 cut(s)	84, 130
BmiI	GGNNCC	1 cut(s)	449
BmsI	GCATC	2 cut(s)	55, 388
BpmI	CTGGAG	1 cut(s)	365
BsaJI	CCNNGG	1 cut(s)	496
BsaWI	WCCGGW	1 cut(s)	270
Bse118I	RCCGGY	1 cut(s)	270
Bse1I	ACTGG	1 cut(s)	455
BseDI	CCNNGG	1 cut(s)	496
BseMII	CTCAG	1 cut(s)	383
BseNI	ACTGG	1 cut(s)	455
BseXI	GCAGC	2 cut(s)	69, 140
Bsh1285I	CGRYCG	1 cut(s)	89
BshTI	ACCGGT	1 cut(s)	270
BsiEI	CGRYCG	1 cut(s)	89
BsiHKAI	GWGCWC	1 cut(s)	381
BsiSI	CCGG	1 cut(s)	271
BsmAI	GTCTC	2 cut(s)	24, 126
Bsp1286I	GDGCHC	1 cut(s)	381
Bsp143I	GATC	4 cut(s)	31, 86, 256, 447
BspACI	CCGC	1 cut(s)	161
BspCNI	CTCAG	1 cut(s)	384
BspLI	GGNNCC	1 cut(s)	449
BspPI	GGATC	3 cut(s)	26, 442, 455
BsrFI	RCCGGY	1 cut(s)	270
BsrI	ACTGG	1 cut(s)	455
BssAI	RCCGGY	1 cut(s)	270
BssECI	CCNNGG	1 cut(s)	496
BssMI	GATC	4 cut(s)	31, 86, 256, 447
BssT1I	CCWWGG	1 cut(s)	496
Bst4CI	ACNGT	1 cut(s)	254
Bst6I	CTCTTC	1 cut(s)	31
BstC8I	GCNNGC	2 cut(s)	319, 372
BstDEI	CTNAG	1 cut(s)	392
BstKTI	GATC	4 cut(s)	34, 89, 259, 450
BstMAI	GTCTC	2 cut(s)	24, 126
BstMBI	GATC	4 cut(s)	31, 86, 256, 447
BstMCI	CGRYCG	1 cut(s)	89
BstMWI	GCNNNNNNNGC	5 cut(s)	88, 134, 167, 376, 512
BstV1I	GCAGC	2 cut(s)	69, 140
BstX2I	RGATCY	1 cut(s)	447
BstYI	RGATCY	1 cut(s)	447
BtsIMutI	CAGTG	1 cut(s)	259
Cac8I	GCNNGC	2 cut(s)	319, 372
Cfr10I	RCCGGY	1 cut(s)	270
Csp6I	GTAC	1 cut(s)	357
CspAI	ACCGGT	1 cut(s)	270
CviAII	CATG	1 cut(s)	322
CviJI	RGCY	4 cut(s)	82, 137, 170, 379
CviKI_1	RGCY	4 cut(s)	82, 137, 170, 379
CviQI	GTAC	1 cut(s)	357
DdeI	CTNAG	1 cut(s)	392
DpnI	GATC	4 cut(s)	33, 88, 258, 449
DpnII	GATC	4 cut(s)	31, 86, 256, 447
Eam1104I	CTCTTC	1 cut(s)	31
EarI	CTCTTC	1 cut(s)	31
EciI	GGCGGA	1 cut(s)	176
Ecl136II	GAGCTC	1 cut(s)	379
Eco130I	CCWWGG	1 cut(s)	496
Eco24I	GRGCYC	1 cut(s)	381
Eco53kI	GAGCTC	1 cut(s)	379
EcoICRI	GAGCTC	1 cut(s)	379
EcoT14I	CCWWGG	1 cut(s)	496
EcoT38I	GRGCYC	1 cut(s)	381
ErhI	CCWWGG	1 cut(s)	496
FaeI	CATG	1 cut(s)	325
FaiI	YATR	9 cut(s)	51, 140, 192, 206, 294, 323, 347, 410, 486
FatI	CATG	1 cut(s)	321
FbaI	TGATCA	1 cut(s)	256
Fnu4HI	GCNGC	2 cut(s)	83, 129
FriOI	GRGCYC	1 cut(s)	381
Fsp4HI	GCNGC	2 cut(s)	83, 129
GluI	GCNGC	2 cut(s)	83, 129
GsuI	CTGGAG	1 cut(s)	365
HapII	CCGG	1 cut(s)	271
Hin1II	CATG	1 cut(s)	325
HinfI	GANTC	2 cut(s)	99, 467
HpaII	CCGG	1 cut(s)	271
Hpy166II	GTNNAC	1 cut(s)	250
Hpy188I	TCNGA	1 cut(s)	31
Hpy188III	TCNNGA	3 cut(s)	362, 382, 445
Hpy8I	GTNNAC	1 cut(s)	250
Hpy99I	CGWCG	1 cut(s)	446
HpyCH4III	ACNGT	1 cut(s)	254
HpyCH4V	TGCA	1 cut(s)	401
HpyF10VI	GCNNNNNNNGC	5 cut(s)	88, 134, 167, 376, 512
HpyF3I	CTNAG	1 cut(s)	392
Hsp92II	CATG	1 cut(s)	325
Ksp22I	TGATCA	1 cut(s)	256
Kzo9I	GATC	4 cut(s)	31, 86, 256, 447
LmnI	GCTCC	1 cut(s)	384
LpnPI	CCDG	8 cut(s)	110, 284, 303, 321, 347, 356, 395, 468
Lsp1109I	GCAGC	2 cut(s)	69, 140
LweI	GCATC	2 cut(s)	55, 388
MalI	GATC	4 cut(s)	33, 88, 258, 449
MboI	GATC	4 cut(s)	31, 86, 256, 447
MboII	GAAGA	4 cut(s)	18, 20, 47, 437
MflI	RGATCY	1 cut(s)	447
MhlI	GDGCHC	1 cut(s)	381
MmeI	TCCRAC	2 cut(s)	154, 475
MnlI	CCTC	3 cut(s)	72, 449, 505
MseI	TTAA	1 cut(s)	302
MspI	CCGG	1 cut(s)	271
MwoI	GCNNNNNNNGC	5 cut(s)	88, 134, 167, 376, 512
NdeII	GATC	4 cut(s)	31, 86, 256, 447
NlaIII	CATG	1 cut(s)	325
NlaIV	GGNNCC	1 cut(s)	449
PfeI	GAWTC	2 cut(s)	99, 467
PinAI	ACCGGT	1 cut(s)	270
PkrI	GCNGC	2 cut(s)	84, 130
Ple19I	CGATCG	1 cut(s)	89
Psp124BI	GAGCTC	1 cut(s)	381
PspN4I	GGNNCC	1 cut(s)	449
PsuI	RGATCY	1 cut(s)	447
PvuI	CGATCG	1 cut(s)	89
RgaI	GCGATCGC	1 cut(s)	89
RsaI	GTAC	1 cut(s)	358
RsaNI	GTAC	1 cut(s)	357
SacI	GAGCTC	1 cut(s)	381
SaqAI	TTAA	1 cut(s)	302
SatI	GCNGC	2 cut(s)	83, 129
Sau3AI	GATC	4 cut(s)	31, 86, 256, 447
SduI	GDGCHC	1 cut(s)	381
SetI	ASST	3 cut(s)	72, 224, 381
SfaAI	GCGATCGC	1 cut(s)	89
SfaNI	GCATC	2 cut(s)	55, 388
SgfI	GCGATCGC	1 cut(s)	89
SsiI	CCGC	1 cut(s)	161
SstI	GAGCTC	1 cut(s)	381
StyI	CCWWGG	1 cut(s)	496
TaaI	ACNGT	1 cut(s)	254
TfiI	GAWTC	2 cut(s)	99, 467
Tru1I	TTAA	1 cut(s)	302
Tru9I	TTAA	1 cut(s)	302
TscAI	CASTG	1 cut(s)	259
TseI	GCWGC	2 cut(s)	82, 128
TspDTI	ATGAA	1 cut(s)	340
TspRI	CASTG	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.