Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0015298

Physical Location & Seq

Genomic Coordinates Reverse (-)

42745333 .. 42747104

Gene Structure 1772 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002991

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGTGTTTGGTATTGATGGTGGTGGTGGGTGGCTTTGTTCAGAGTCTGTAGCAGAAGCCATAAAGATTACAATGGAATGGGCGGACAAGGCTGTTGGATTTCTATTGTCGTATATCAGTTTATCTATATTCACTTATTATACCTTTTGGGTCATTATTCTGCCATTTGTGAACAGTGATCACTTTATCCACCGGTATTTTTTACCCCAAGAATATGCCATCTTAATCCCTGTATTTGCTGGCATGGTGCTTCTTTGCTTTCTCTCCATATTCATTGGTACTCTGGACTTGCTGGCAGAGCTCCAGATAGACCTGGGTGATCCATGTATCATGGTGAAGTTTGTTGAAGATGTGGGTCGCCTCGTTGGGATCCAACCAATTTTGAATGATTCCATTTTGGCAGAGGATATCAATGTCCTTGGTAGTGCTGGTGAGGCAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006066 GO:0006464 GO:0006486 GO:0006493 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006720 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009247 GO:0009987 GO:0012505 GO:0016020 GO:0016093 GO:0019348 GO:0019538 GO:0019637 GO:0030234 GO:0031501 GO:0031984 GO:0032991 GO:0033185 GO:0034645 GO:0035268 GO:0035269 GO:0036211 GO:0042157 GO:0042158 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0050790 GO:0065007 GO:0065009 GO:0070085 GO:0071704 GO:0090407 GO:0097502 GO:0098772 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1902494 GO:1903509 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00510 ko00563 ko01100 map00510 map00563 map01100

Pfam Domains

Protein Families

DPM2

Protein Analysis

148

Amino Acids

16.23

Weight (kDa)

4.1

Isoelectric Point (pI)

29.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPM2	PF07297	28 - 94	1.6e-28	Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015298)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74340 AT1G74340
malus_domestica	MD06G1025500.v1.1 MD16G1280900.v1.1
prunus_persica	Prupe.5G029600_v2.0.a1
pyrus_communis	pycom06g02060 pycom06g02070
rosa_chinensis	RchiOBHm_Chr7g0211611
rosa_laevigata	RLG00000002991
rosa_multiflora	Rmu_sc0003760.1_g000018 Rmu_sc0004232.1_g000020
rosa_roxburghii	Rroxscaffold_3G00247680
rosa_rugosa	Rorug07G0126300
rosa_samantha	Rh7AG258900 Rh7CG276000
rosa_wichuraiana	Rw7G022130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	83
AclWI	GGATC	3 cut(s)	314, 364, 377
AfaI	GTAC	1 cut(s)	280
AgeI	ACCGGT	1 cut(s)	192
AgsI	TTSAA	2 cut(s)	347, 385
AjnI	CCWGG	1 cut(s)	312
AluBI	AGCT	1 cut(s)	301
AluI	AGCT	1 cut(s)	301
Alw21I	GWGCWC	1 cut(s)	303
AlwI	GGATC	3 cut(s)	314, 364, 377
AlwNI	CAGNNNCTG	1 cut(s)	47
AsiGI	ACCGGT	1 cut(s)	192
AsuHPI	GGTGA	3 cut(s)	329, 346, 443
BamHI	GGATCC	1 cut(s)	369
BanII	GRGCYC	1 cut(s)	303
Bbv12I	GWGCWC	1 cut(s)	303
BccI	CCATC	2 cut(s)	11, 227
BciT130I	CCWGG	1 cut(s)	314
BclI	TGATCA	1 cut(s)	178
BfmI	CTRYAG	1 cut(s)	48
Bme1390I	CCNGG	1 cut(s)	314
BmiI	GGNNCC	1 cut(s)	371
BmrFI	CCNGG	1 cut(s)	314
BpmI	CTGGAG	1 cut(s)	287
BsaJI	CCNNGG	2 cut(s)	313, 418
BsaWI	WCCGGW	1 cut(s)	192
Bse118I	RCCGGY	1 cut(s)	192
BseBI	CCWGG	1 cut(s)	314
BseDI	CCNNGG	2 cut(s)	313, 418
BshTI	ACCGGT	1 cut(s)	192
BsiHKAI	GWGCWC	1 cut(s)	303
BsiSI	CCGG	1 cut(s)	193
Bsp1286I	GDGCHC	1 cut(s)	303
Bsp143I	GATC	3 cut(s)	178, 319, 369
BspACI	CCGC	1 cut(s)	83
BspLI	GGNNCC	1 cut(s)	371
BspPI	GGATC	3 cut(s)	314, 364, 377
BsrFI	RCCGGY	1 cut(s)	192
BssAI	RCCGGY	1 cut(s)	192
BssECI	CCNNGG	2 cut(s)	313, 418
BssMI	GATC	3 cut(s)	178, 319, 369
BssT1I	CCWWGG	1 cut(s)	418
Bst2UI	CCWGG	1 cut(s)	314
Bst4CI	ACNGT	1 cut(s)	176
BstC8I	GCNNGC	2 cut(s)	241, 294
BstKTI	GATC	3 cut(s)	181, 322, 372
BstMBI	GATC	3 cut(s)	178, 319, 369
BstMWI	GCNNNNNNNGC	3 cut(s)	89, 298, 434
BstNI	CCWGG	1 cut(s)	314
BstSCI	CCNGG	1 cut(s)	312
BstSFI	CTRYAG	1 cut(s)	48
BstX2I	RGATCY	1 cut(s)	369
BstYI	RGATCY	1 cut(s)	369
BtsIMutI	CAGTG	1 cut(s)	181
Cac8I	GCNNGC	2 cut(s)	241, 294
CaiI	CAGNNNCTG	1 cut(s)	47
Cfr10I	RCCGGY	1 cut(s)	192
Csp6I	GTAC	1 cut(s)	279
CspAI	ACCGGT	1 cut(s)	192
CviAII	CATG	3 cut(s)	244, 324, 331
CviJI	RGCY	4 cut(s)	34, 59, 92, 301
CviKI_1	RGCY	4 cut(s)	34, 59, 92, 301
CviQI	GTAC	1 cut(s)	279
DpnI	GATC	3 cut(s)	180, 321, 371
DpnII	GATC	3 cut(s)	178, 319, 369
EciI	GGCGGA	1 cut(s)	98
Ecl136II	GAGCTC	1 cut(s)	301
Eco130I	CCWWGG	1 cut(s)	418
Eco24I	GRGCYC	1 cut(s)	303
Eco32I	GATATC	1 cut(s)	409
Eco53kI	GAGCTC	1 cut(s)	301
EcoICRI	GAGCTC	1 cut(s)	301
EcoRII	CCWGG	1 cut(s)	312
EcoRV	GATATC	1 cut(s)	409
EcoT14I	CCWWGG	1 cut(s)	418
EcoT38I	GRGCYC	1 cut(s)	303
ErhI	CCWWGG	1 cut(s)	418
FaeI	CATG	3 cut(s)	247, 327, 334
FaiI	YATR	9 cut(s)	62, 114, 128, 141, 216, 245, 269, 325, 332
FatI	CATG	3 cut(s)	243, 323, 330
FbaI	TGATCA	1 cut(s)	178
FriOI	GRGCYC	1 cut(s)	303
GsuI	CTGGAG	1 cut(s)	287
HapII	CCGG	1 cut(s)	193
Hin1II	CATG	3 cut(s)	247, 327, 334
HinfI	GANTC	2 cut(s)	44, 389
HpaII	CCGG	1 cut(s)	193
HphI	GGTGA	3 cut(s)	329, 346, 443
Hpy166II	GTNNAC	1 cut(s)	172
Hpy188I	TCNGA	1 cut(s)	43
Hpy188III	TCNNGA	2 cut(s)	284, 304
Hpy8I	GTNNAC	1 cut(s)	172
HpyCH4III	ACNGT	1 cut(s)	176
HpyF10VI	GCNNNNNNNGC	3 cut(s)	89, 298, 434
Hsp92II	CATG	3 cut(s)	247, 327, 334
Ksp22I	TGATCA	1 cut(s)	178
Kzo9I	GATC	3 cut(s)	178, 319, 369
LmnI	GCTCC	1 cut(s)	306
LpnPI	CCDG	9 cut(s)	206, 225, 243, 269, 278, 299, 317, 326, 414
MalI	GATC	3 cut(s)	180, 321, 371
MboI	GATC	3 cut(s)	178, 319, 369
MboII	GAAGA	1 cut(s)	359
MflI	RGATCY	1 cut(s)	369
MhlI	GDGCHC	1 cut(s)	303
MluCI	AATT	1 cut(s)	378
MlyI	GAGTC	1 cut(s)	53
MmeI	TCCRAC	2 cut(s)	76, 397
MnlI	CCTC	3 cut(s)	371, 397, 427
MseI	TTAA	1 cut(s)	224
MspI	CCGG	1 cut(s)	193
MspR9I	CCNGG	1 cut(s)	314
MvaI	CCWGG	1 cut(s)	314
MwoI	GCNNNNNNNGC	3 cut(s)	89, 298, 434
NdeII	GATC	3 cut(s)	178, 319, 369
NlaIII	CATG	3 cut(s)	247, 327, 334
NlaIV	GGNNCC	1 cut(s)	371
PfeI	GAWTC	1 cut(s)	389
PinAI	ACCGGT	1 cut(s)	192
PleI	GAGTC	1 cut(s)	52
PpsI	GAGTC	1 cut(s)	52
Psp124BI	GAGCTC	1 cut(s)	303
Psp6I	CCWGG	1 cut(s)	312
PspGI	CCWGG	1 cut(s)	312
PspN4I	GGNNCC	1 cut(s)	371
PstNI	CAGNNNCTG	1 cut(s)	47
PsuI	RGATCY	1 cut(s)	369
RsaI	GTAC	1 cut(s)	280
RsaNI	GTAC	1 cut(s)	279
SacI	GAGCTC	1 cut(s)	303
SaqAI	TTAA	1 cut(s)	224
Sau3AI	GATC	3 cut(s)	178, 319, 369
SchI	GAGTC	1 cut(s)	53
ScrFI	CCNGG	1 cut(s)	314
SduI	GDGCHC	1 cut(s)	303
SetI	ASST	3 cut(s)	146, 303, 315
SfcI	CTRYAG	1 cut(s)	48
Sse9I	AATT	1 cut(s)	378
SsiI	CCGC	1 cut(s)	83
SstI	GAGCTC	1 cut(s)	303
StyD4I	CCNGG	1 cut(s)	312
StyI	CCWWGG	1 cut(s)	418
TaaI	ACNGT	1 cut(s)	176
TasI	AATT	1 cut(s)	378
TfiI	GAWTC	1 cut(s)	389
Tru1I	TTAA	1 cut(s)	224
Tru9I	TTAA	1 cut(s)	224
TscAI	CASTG	1 cut(s)	181
TspDTI	ATGAA	1 cut(s)	262
TspRI	CASTG	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.