Rmu_sc0003760.1_g000018

Dolichol phosphate-mannose biosynthesis regulatory

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003760.1
Physical Location & Seq
Reverse (-)
65893 .. 71304
5412 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003760.1_g000018.1.cds

Sequence Viewer

Length: 1206 bp
atggtgaggttgcaggtgcctagcgaggctaacgtgtgcgggggctgtcaacaagggtgtgcgaggcgtgcagggcttgctgtgctgggttgccaaggcaaggctagaagctgtcgaggcgaggctaacgatggaggaagaaaggtgttaacaaggctaaagcactgtgcaaagtcgcaccgagctgtgcgctggaccatgcctccaaccgccatggcctgcacgtcgtcggcgccggcagtcgatggtaattcgtttccagcccagaagccggcgatcctctctctctatctccgtgaaggtgctgccgacgatcttttgcagcccagaagccagcgatcgtcaactcagaggcggcgccacggatcgtgcagccagcggcaacttcatccaactcagagtcgtgcagctccggtgtggcggcttgaagtcgactccggtgccgagtccgggtctgcaacgattgcgacgaccggagttccgccgaggtcgagtaggaaggccaggggattcatgggattttcagcaaatttcggtgggcggcagccggtgacaggattccggcgaccggctttggccggattccggctaaagttggccggaatcatgcgaccggtgaccggaatccggctgccggtgacgggctccggcgaagtctccaataatttctctctctctctaagtaacaaaggggtgagggagtctctctcttctgatcctacaccaacgcatcatagtcttcgtcctccctaccttactcttgggctgagatcgccgttgggattcaaacaaggattactattgtctctggtagcagaagccataaagattacaatggaatgggcggacaaggctgttggatttctattgtcgtatatcagtttatctatattcacttattataccttttgggtcattattctgccatttgtgaacagtgatcactttatccaccgatattttttaccccaagaatatgccatcttaatccctgtatttgctggcatggtgcttctttgctttctctccatattcattggtactctggacttgctggcagagctccagatagaactgagtgatgcacgtatcatagtgaagtttgttgaagatgtgggtcgcctcgtcgggatccaaccagttttgaatgattccattttggcagagtatatcaatgtccttggtagtgctgatgaggcaatctaa

Protein Analysis

401

Amino Acids

43.54

Weight (kDa)

9.82

Isoelectric Point (pI)

50.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0015298)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 4
Acc36I ACCTGC 1 cut(s) 4
AccB1I GGYRCC 4 cut(s) 16, 232, 357, 440
AccI GTMKAC 1 cut(s) 432
AciI CCGC 8 cut(s) 39, 210, 355, 379, 421, 482, 541, 845
AclWI GGATC 5 cut(s) 271, 373, 710, 1126, 1139
AcoI YGGCCR 2 cut(s) 576, 597
AcsI RAATTY 1 cut(s) 529
AcyI GRCGYC 2 cut(s) 233, 358
AfaI GTAC 1 cut(s) 1042
AflIII ACRYGT 1 cut(s) 33
AgeI ACCGGT 1 cut(s) 613
AgsI TTSAA 4 cut(s) 428, 787, 1109, 1147
AjiI CACGTC 1 cut(s) 225
AjnI CCWGG 1 cut(s) 503
AluBI AGCT 4 cut(s) 111, 185, 410, 1063
AluI AGCT 4 cut(s) 111, 185, 410, 1063
Alw21I GWGCWC 1 cut(s) 1065
Alw26I GTCTC 3 cut(s) 661, 708, 810
AlwI GGATC 5 cut(s) 271, 373, 710, 1126, 1139
AoxI GGCC 4 cut(s) 216, 501, 576, 597
ApeKI GCWGC 6 cut(s) 305, 322, 372, 407, 544, 631
ApoI RAATTY 1 cut(s) 529
AsiGI ACCGGT 1 cut(s) 613
AspLEI GCGC 3 cut(s) 192, 235, 360
AspS9I GGNCC 1 cut(s) 195
AsuC2I CCSGG 1 cut(s) 451
AsuHPI GGTGA 5 cut(s) 16, 562, 628, 649, 706
AvaII GGWCC 1 cut(s) 195
BamHI GGATCC 1 cut(s) 1131
BanI GGYRCC 4 cut(s) 16, 232, 357, 440
BanII GRGCYC 2 cut(s) 647, 1065
BbsI GAAGAC 1 cut(s) 731
Bbv12I GWGCWC 1 cut(s) 1065
BbvI GCAGC 6 cut(s) 292, 334, 384, 419, 556, 618
BccI CCATC 3 cut(s) 125, 239, 989
BceAI ACGGC 1 cut(s) 760
BcgI CGANNNNNNTGC 2 cut(s) 422, 456
BciT130I CCWGG 1 cut(s) 505
BclI TGATCA 1 cut(s) 940
BcnI CCSGG 1 cut(s) 451
BcoDI GTCTC 3 cut(s) 661, 708, 810
BfaI CTAG 2 cut(s) 21, 105
BfoI RGCGCY 2 cut(s) 236, 361
BfuAI ACCTGC 1 cut(s) 4
Bme1390I CCNGG 2 cut(s) 451, 505
Bme18I GGWCC 1 cut(s) 195
BmgBI CACGTC 1 cut(s) 225
BmgT120I GGNCC 1 cut(s) 195
BmiI GGNNCC 6 cut(s) 18, 234, 359, 442, 646, 1133
BmrFI CCNGG 2 cut(s) 451, 505
BmsI GCATC 2 cut(s) 739, 1072
BpiI GAAGAC 1 cut(s) 731
BplI GAGNNNNNCTC 4 cut(s) 688, 720, 692, 724
BpmI CTGGAG 1 cut(s) 1049
BpuMI CCSGG 1 cut(s) 451
BsaAI YACGTR 1 cut(s) 1088
BsaHI GRCGYC 2 cut(s) 233, 358
BsaJI CCNNGG 6 cut(s) 94, 213, 361, 485, 504, 1180
BsaWI WCCGGW 5 cut(s) 412, 437, 473, 613, 620
BsaXI ACNNNNNCTCC 2 cut(s) 187, 217
Bse118I RCCGGY 6 cut(s) 235, 271, 547, 568, 613, 634
Bse1I ACTGG 1 cut(s) 1139
BseBI CCWGG 1 cut(s) 505
BseDI CCNNGG 6 cut(s) 94, 213, 361, 485, 504, 1180
BseGI GGATG 1 cut(s) 388
BseMII CTCAG 4 cut(s) 362, 410, 758, 1067
BseNI ACTGG 1 cut(s) 1139
BseXI GCAGC 6 cut(s) 292, 334, 384, 419, 556, 618
BseYI CCCAGC 1 cut(s) 85
BsgI GTGCAG 4 cut(s) 90, 205, 391, 426
Bsh1285I CGRYCG 4 cut(s) 341, 474, 569, 614
BshFI GGCC 4 cut(s) 218, 503, 578, 599
BshNI GGYRCC 4 cut(s) 16, 232, 357, 440
BshTI ACCGGT 1 cut(s) 613
BsiEI CGRYCG 4 cut(s) 341, 474, 569, 614
BsiHKAI GWGCWC 1 cut(s) 1065
BsmAI GTCTC 3 cut(s) 661, 708, 810
BsnI GGCC 4 cut(s) 218, 503, 578, 599
Bsp1286I GDGCHC 2 cut(s) 647, 1065
Bsp143I GATC 8 cut(s) 276, 313, 338, 365, 715, 770, 940, 1131
Bsp19I CCATGG 1 cut(s) 213
BspACI CCGC 8 cut(s) 39, 210, 355, 379, 421, 482, 541, 845
BspANI GGCC 4 cut(s) 218, 503, 578, 599
BspCNI CTCAG 4 cut(s) 361, 409, 759, 1068
BspLI GGNNCC 6 cut(s) 18, 234, 359, 442, 646, 1133
BspMI ACCTGC 1 cut(s) 4
BspPI GGATC 5 cut(s) 271, 373, 710, 1126, 1139
BspT107I GGYRCC 4 cut(s) 16, 232, 357, 440
BsrFI RCCGGY 6 cut(s) 235, 271, 547, 568, 613, 634
BsrI ACTGG 1 cut(s) 1139
BssAI RCCGGY 6 cut(s) 235, 271, 547, 568, 613, 634
BssECI CCNNGG 6 cut(s) 94, 213, 361, 485, 504, 1180
BssMI GATC 8 cut(s) 276, 313, 338, 365, 715, 770, 940, 1131
BssNI GRCGYC 2 cut(s) 233, 358
BssT1I CCWWGG 3 cut(s) 94, 213, 1180
Bst2UI CCWGG 1 cut(s) 505
Bst4CI ACNGT 2 cut(s) 167, 938
Bst6I CTCTTC 1 cut(s) 715
BstACI GRCGYC 2 cut(s) 233, 358
BstAPI GCANNNNNTGC 2 cut(s) 77, 464
BstBAI YACGTR 1 cut(s) 1088
BstC8I GCNNGC 9 cut(s) 69, 78, 220, 237, 273, 335, 377, 1003, 1056
BstDEI CTNAG 5 cut(s) 348, 396, 680, 767, 1076
BstDSI CCRYGG 2 cut(s) 213, 361
BstEII GGTNACC 1 cut(s) 616
BstF5I GGATG 1 cut(s) 388
BstH2I RGCGCY 2 cut(s) 236, 361
BstHHI GCGC 3 cut(s) 192, 235, 360
BstKTI GATC 8 cut(s) 279, 316, 341, 368, 718, 773, 943, 1134
BstMAI GTCTC 3 cut(s) 661, 708, 810
BstMBI GATC 8 cut(s) 276, 313, 338, 365, 715, 770, 940, 1131
BstMCI CGRYCG 4 cut(s) 341, 474, 569, 614
BstNI CCWGG 1 cut(s) 505
BstPI GGTNACC 1 cut(s) 616
BstSCI CCNGG 2 cut(s) 449, 503
BstV1I GCAGC 6 cut(s) 292, 334, 384, 419, 556, 618
BstV2I GAAGAC 1 cut(s) 731
BstX2I RGATCY 1 cut(s) 1131
BstYI RGATCY 1 cut(s) 1131
BsuRI GGCC 4 cut(s) 218, 503, 578, 599
BtgI CCRYGG 2 cut(s) 213, 361
BtrI CACGTC 1 cut(s) 225
BtsCI GGATG 1 cut(s) 388
BtsIMutI CAGTG 2 cut(s) 163, 943
BveI ACCTGC 1 cut(s) 4
Cac8I GCNNGC 9 cut(s) 69, 78, 220, 237, 273, 335, 377, 1003, 1056
CfoI GCGC 3 cut(s) 192, 235, 360
Cfr10I RCCGGY 6 cut(s) 235, 271, 547, 568, 613, 634
Cfr13I GGNCC 1 cut(s) 195
Csp6I GTAC 1 cut(s) 1041
CspAI ACCGGT 1 cut(s) 613
CviAII CATG 5 cut(s) 199, 214, 514, 607, 1006
CviQI GTAC 1 cut(s) 1041
DdeI CTNAG 5 cut(s) 348, 396, 680, 767, 1076
DinI GGCGCC 2 cut(s) 234, 359
DpnI GATC 8 cut(s) 278, 315, 340, 367, 717, 772, 942, 1133
DpnII GATC 8 cut(s) 276, 313, 338, 365, 715, 770, 940, 1131
EaeI YGGCCR 2 cut(s) 576, 597
Eam1104I CTCTTC 1 cut(s) 715
EarI CTCTTC 1 cut(s) 715
EciI GGCGGA 2 cut(s) 471, 860
Ecl136II GAGCTC 1 cut(s) 1063
Eco130I CCWWGG 3 cut(s) 94, 213, 1180
Eco24I GRGCYC 2 cut(s) 647, 1065
Eco47I GGWCC 1 cut(s) 195
Eco53kI GAGCTC 1 cut(s) 1063
Eco91I GGTNACC 1 cut(s) 616
EcoICRI GAGCTC 1 cut(s) 1063
EcoO65I GGTNACC 1 cut(s) 616
EcoRII CCWGG 1 cut(s) 503
EcoT14I CCWWGG 3 cut(s) 94, 213, 1180
EcoT38I GRGCYC 2 cut(s) 647, 1065
EgeI GGCGCC 2 cut(s) 234, 359
EheI GGCGCC 2 cut(s) 234, 359
ErhI CCWWGG 3 cut(s) 94, 213, 1180
FaeI CATG 5 cut(s) 202, 217, 517, 610, 1009
FatI CATG 5 cut(s) 198, 213, 513, 606, 1005
FauI CCCGC 1 cut(s) 32
FbaI TGATCA 1 cut(s) 940
FblI GTMKAC 1 cut(s) 432
FokI GGATG 1 cut(s) 375
FriOI GRGCYC 2 cut(s) 647, 1065
FspBI CTAG 2 cut(s) 21, 105
GlaI GCGC 3 cut(s) 191, 234, 359
GsaI CCCAGC 1 cut(s) 89
GsuI CTGGAG 1 cut(s) 1049
HaeII RGCGCY 2 cut(s) 236, 361
HaeIII GGCC 4 cut(s) 218, 503, 578, 599
HhaI GCGC 3 cut(s) 192, 235, 360
Hin1I GRCGYC 2 cut(s) 233, 358
Hin1II CATG 5 cut(s) 202, 217, 517, 610, 1009
Hin6I GCGC 3 cut(s) 190, 233, 358
HinP1I GCGC 3 cut(s) 190, 233, 358
HincII GTYRAC 4 cut(s) 50, 150, 345, 433
HindII GTYRAC 4 cut(s) 50, 150, 345, 433
HpaI GTTAAC 1 cut(s) 150
HphI GGTGA 5 cut(s) 16, 562, 628, 649, 706
Hpy166II GTNNAC 5 cut(s) 50, 150, 345, 433, 934
Hpy188I TCNGA 3 cut(s) 351, 399, 715
Hpy188III TCNNGA 3 cut(s) 1046, 1066, 1129
Hpy8I GTNNAC 5 cut(s) 50, 150, 345, 433, 934
Hpy99I CGWCG 5 cut(s) 229, 232, 314, 472, 1130
HpyAV CCTTC 2 cut(s) 293, 493
HpyCH4III ACNGT 2 cut(s) 167, 938
HpyCH4IV ACGT 3 cut(s) 33, 224, 1087
HpyCH4V TGCA 9 cut(s) 13, 71, 170, 222, 322, 372, 407, 458, 1085
HpyF3I CTNAG 5 cut(s) 348, 396, 680, 767, 1076
HpySE526I ACGT 3 cut(s) 33, 224, 1087
Hsp92I GRCGYC 2 cut(s) 233, 358
Hsp92II CATG 5 cut(s) 202, 217, 517, 610, 1009
HspAI GCGC 3 cut(s) 190, 233, 358
KasI GGCGCC 2 cut(s) 232, 357
KroI GCCGGC 2 cut(s) 235, 271
KroNI GCCGGC 2 cut(s) 237, 273
Ksp22I TGATCA 1 cut(s) 940
KspAI GTTAAC 1 cut(s) 150
Kzo9I GATC 8 cut(s) 276, 313, 338, 365, 715, 770, 940, 1131
LmnI GCTCC 3 cut(s) 415, 650, 1068
Lsp1109I GCAGC 6 cut(s) 292, 334, 384, 419, 556, 618
LweI GCATC 2 cut(s) 739, 1072
MaeI CTAG 2 cut(s) 21, 105
MaeII ACGT 3 cut(s) 33, 224, 1087
MaeIII GTNAC 4 cut(s) 550, 616, 637, 683
MalI GATC 8 cut(s) 278, 315, 340, 367, 717, 772, 942, 1133
MboI GATC 8 cut(s) 276, 313, 338, 365, 715, 770, 940, 1131
MboII GAAGA 4 cut(s) 150, 702, 731, 1121
MflI RGATCY 1 cut(s) 1131
MhlI GDGCHC 2 cut(s) 647, 1065
MluCI AATT 3 cut(s) 250, 529, 664
Mly113I GGCGCC 2 cut(s) 233, 358
MlyI GAGTC 4 cut(s) 409, 428, 455, 710
MmeI TCCRAC 4 cut(s) 230, 416, 838, 1159
MroNI GCCGGC 2 cut(s) 235, 271
MseI TTAA 2 cut(s) 149, 986
MspA1I CMGCKG 1 cut(s) 379
MspR9I CCNGG 2 cut(s) 451, 505
MvaI CCWGG 1 cut(s) 505
NaeI GCCGGC 2 cut(s) 237, 273
NarI GGCGCC 2 cut(s) 233, 358
NciI CCSGG 1 cut(s) 451
NcoI CCATGG 1 cut(s) 213
NdeII GATC 8 cut(s) 276, 313, 338, 365, 715, 770, 940, 1131
NgoMIV GCCGGC 2 cut(s) 235, 271
NlaIII CATG 5 cut(s) 202, 217, 517, 610, 1009
NlaIV GGNNCC 6 cut(s) 18, 234, 359, 442, 646, 1133
NmeAIII GCCGAG 2 cut(s) 469, 510
NmuCI GTSAC 3 cut(s) 550, 616, 637
PaqCI CACCTGC 1 cut(s) 4
PcsI WCGNNNNNNNCGW 1 cut(s) 467
PdiI GCCGGC 2 cut(s) 237, 273
PfeI GAWTC 7 cut(s) 510, 558, 582, 603, 624, 783, 1151
PinAI ACCGGT 1 cut(s) 613
Ple19I CGATCG 1 cut(s) 341
PleI GAGTC 4 cut(s) 408, 428, 454, 709
PluTI GGCGCC 2 cut(s) 236, 361
PpsI GAGTC 4 cut(s) 408, 428, 454, 709
Ppu21I YACGTR 1 cut(s) 1088
Psp124BI GAGCTC 1 cut(s) 1065
Psp6I CCWGG 1 cut(s) 503
PspEI GGTNACC 1 cut(s) 616
PspFI CCCAGC 1 cut(s) 85
PspGI CCWGG 1 cut(s) 503
PspN4I GGNNCC 6 cut(s) 18, 234, 359, 442, 646, 1133
PspPI GGNCC 1 cut(s) 195
PsuI RGATCY 1 cut(s) 1131
PvuI CGATCG 1 cut(s) 341
RsaI GTAC 1 cut(s) 1042
RsaNI GTAC 1 cut(s) 1041
SacI GAGCTC 1 cut(s) 1065
SalI GTCGAC 1 cut(s) 431
SaqAI TTAA 2 cut(s) 149, 986
Sau3AI GATC 8 cut(s) 276, 313, 338, 365, 715, 770, 940, 1131
Sau96I GGNCC 1 cut(s) 195
SchI GAGTC 4 cut(s) 409, 428, 455, 710
ScrFI CCNGG 2 cut(s) 451, 505
SduI GDGCHC 2 cut(s) 647, 1065
SfaNI GCATC 2 cut(s) 739, 1072
SfoI GGCGCC 2 cut(s) 234, 359
SinI GGWCC 1 cut(s) 195
Sse9I AATT 3 cut(s) 250, 529, 664
SsiI CCGC 8 cut(s) 39, 210, 355, 379, 421, 482, 541, 845
SspDI GGCGCC 2 cut(s) 232, 357
SspMI CTAG 2 cut(s) 21, 105
SstI GAGCTC 1 cut(s) 1065
StyD4I CCNGG 2 cut(s) 449, 503
StyI CCWWGG 3 cut(s) 94, 213, 1180
TaaI ACNGT 2 cut(s) 167, 938
TaiI ACGT 3 cut(s) 36, 227, 1090
TaqI TCGA 4 cut(s) 115, 243, 432, 491
TasI AATT 3 cut(s) 250, 529, 664
TauI GCSGC 4 cut(s) 358, 382, 424, 544
TfiI GAWTC 7 cut(s) 510, 558, 582, 603, 624, 783, 1151
Tru1I TTAA 2 cut(s) 149, 986
Tru9I TTAA 2 cut(s) 149, 986
TscAI CASTG 2 cut(s) 170, 943
TseFI GTSAC 3 cut(s) 550, 616, 637
TseI GCWGC 6 cut(s) 305, 322, 372, 407, 544, 631
Tsp45I GTSAC 3 cut(s) 550, 616, 637
TspDTI ATGAA 3 cut(s) 377, 502, 1024
TspGWI ACGGA 2 cut(s) 284, 378
TspRI CASTG 2 cut(s) 170, 943
VpaK11BI GGWCC 1 cut(s) 195
XapI RAATTY 1 cut(s) 529
XcmI CCANNNNNNNNNTGG 1 cut(s) 511
XmiI GTMKAC 1 cut(s) 432
XspI CTAG 2 cut(s) 21, 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.