Prupe.5G042700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0016347
Physical Location & Seq
Forward (+)
4710734 .. 4712263
1530 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G042700.1

Sequence Viewer

Length: 1197 bp
ATGAAGATCTCCCTCAGGTTTCAAGAAGACCAACCAGAGTTCCAAAACCAGCAAAACCCACTGATAAAGGCAAAGGTACCTCTAACCATCTTCAACCAACCTTTTACTTCTTCCATTGCCACCGTCCCCTCCACCACCACATCCACCTCCATGCCCACCAACTCTTCTTCTCACCTCTCGTTTTCTCTCTCATCCAATTTCTCTTCCGGGCCTTCTGTCAAACTTTCTTACTCTCACACCTCCACCACACCCTCTCCTTTCTCTCTCTCCCTCAAGTCTGGTCTTGGCCTCTTTGGCTCCCCAAAAAACTCCCCTCTTGTTTTCACTGCCAATTTCTCTCTCTCCCACACAAACCCCAGTTTCTCTCTCCACATCAAGCCCCAATTTGGCAACTTTTCCCTAAAACAAACCGCATTTTCAGACCCTAATTTTAAACAGATTTCTGGGTCTGCCTCCAATGTTGGTGCCCATTTGGATTCTGGGTCCGTTTCAAATGGTGATTTTGATAATGGATTTGTCTCTGAAGGGTCATCTGTTTGGCAGGAGCTTAGGTTGGAGCCTTGCGGTGGCAAAAATGGGGCTGTGAACAGTGAATTTAGGGATAATTGTGGAGCTCATTTGAATGGTGGGTCTGTGGCAGAGAAGCCATTGGCTTGGAAAAATGGTGGGAAAGATGGGCTTTTTTCTGGAATTGCTGTGATGGCAAGGACAGTGTTGCCAGTGACAAAAAGTGTGGTAATGAATATGCGATGGGGTGTGAATCTTCCACCAAAGTTTGGCAAAGCAATGCCGTATTTAACACTTAATAAAATCGGTATTGAGAGAGTTGAGGAGGTAAAGGCAGAGGAGGAGAAGGGTACTGATAGTAGTAATGTGGGTGATTTTGAATTGTTAAAGGGGATGTGCTTTTGGATGAGAAGGGATTTGGAGGTCATGGAGAAGGAAAATAAGGAGATGAAGCACAGGTTGGAGGAGATGAAGTCGGGAGTTTCTAGGAAGCATTTTAGAGGGGAGAGTGATTCTGTTGGGAAGAGAGTTTCACCTCCTTTGGATGAGACTTCTGGCGGGTTCGAACAGTGGAGAAACAAGAAGAAAGTCAGAGAAGAGAATGCGAGAACAGAGGCGAAAAAGTCCACCGATTCTGCTAGTGATTTGGAATCTGAATTGCAAAGAGCTATCAAGGCTGCTACCATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

399

Amino Acids

43.49

Weight (kDa)

9.05

Isoelectric Point (pI)

39.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g21440
malus_domestica MD06G1029200.v1.1
prunus_persica Prupe.5G042700_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0208871
rosa_laevigata RLG00000003188
rosa_multiflora Rmu_sc0000532.1_g000005 Rmu_sc0001482.1_g000003 Rmu_sc0016359.1_g000001
rosa_roxburghii Rroxscaffold_3G00250090
rosa_rugosa Rorug07G0107000
rosa_samantha Rh7AG242000 Rh7BG236800 Rh7CG256900 Rh7DG247900
rosa_wichuraiana Rw7G020490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 76
AccB1I GGYRCC 2 cut(s) 76, 464
AccB7I CCANNNNNTGG 1 cut(s) 776
AciI CCGC 3 cut(s) 411, 564, 1065
AcsI RAATTY 1 cut(s) 593
AcuI CTGAAG 1 cut(s) 543
AfaI GTAC 2 cut(s) 78, 859
AfiI CCNNNNNNNGG 3 cut(s) 386, 566, 776
AgsI TTSAA 5 cut(s) 23, 94, 492, 622, 887
AjuI GAANNNNNNNTTGG 2 cut(s) 950, 982
AluBI AGCT 3 cut(s) 547, 614, 1175
AluI AGCT 3 cut(s) 547, 614, 1175
Alw21I GWGCWC 1 cut(s) 616
Alw26I GTCTC 2 cut(s) 523, 1049
AoxI GGCC 2 cut(s) 209, 286
ApeKI GCWGC 1 cut(s) 1184
ApoI RAATTY 1 cut(s) 593
Asp718I GGTACC 1 cut(s) 76
AspS9I GGNCC 2 cut(s) 209, 483
AsuC2I CCSGG 1 cut(s) 208
AsuHPI GGTGA 4 cut(s) 164, 509, 890, 1032
AsuII TTCGAA 1 cut(s) 1071
AvaII GGWCC 1 cut(s) 483
AxyI CCTNAGG 1 cut(s) 14
BaeGI GKGCMC 1 cut(s) 469
BanI GGYRCC 2 cut(s) 76, 464
BanII GRGCYC 1 cut(s) 616
BbsI GAAGAC 1 cut(s) 33
Bbv12I GWGCWC 1 cut(s) 616
BbvI GCAGC 1 cut(s) 1171
BccI CCATC 4 cut(s) 95, 668, 694, 744
BceAI ACGGC 1 cut(s) 775
BcnI CCSGG 1 cut(s) 208
BcoDI GTCTC 2 cut(s) 523, 1049
BfaI CTAG 2 cut(s) 993, 1146
BglI GCCNNNNNGGC 1 cut(s) 294
BglII AGATCT 1 cut(s) 6
BisI GCNGC 1 cut(s) 1185
BlsI GCNGC 1 cut(s) 1186
Bme1390I CCNGG 1 cut(s) 208
Bme18I GGWCC 1 cut(s) 483
BmgT120I GGNCC 2 cut(s) 209, 483
BmiI GGNNCC 5 cut(s) 78, 298, 466, 484, 558
BmrFI CCNGG 1 cut(s) 208
BmrI ACTGGG 1 cut(s) 351
BmuI ACTGGG 1 cut(s) 351
BpiI GAAGAC 1 cut(s) 33
Bpu10I CCTNAGC 1 cut(s) 548
Bpu14I TTCGAA 1 cut(s) 1071
BpuEI CTTGAG 1 cut(s) 257
BpuMI CCSGG 1 cut(s) 208
BsaXI ACNNNNNCTCC 6 cut(s) 238, 268, 536, 566, 965, 995
Bsc4I CCNNNNNNNGG 3 cut(s) 386, 566, 776
Bse1I ACTGG 2 cut(s) 357, 719
Bse21I CCTNAGG 1 cut(s) 14
Bse3DI GCAATG 2 cut(s) 114, 792
BseGI GGATG 5 cut(s) 140, 191, 906, 918, 1057
BseLI CCNNNNNNNGG 3 cut(s) 386, 566, 776
BseMI GCAATG 2 cut(s) 114, 792
BseMII CTCAG 1 cut(s) 28
BseNI ACTGG 2 cut(s) 357, 719
BseRI GAGGAG 4 cut(s) 845, 860, 863, 986
BseSI GKGCMC 1 cut(s) 469
BseXI GCAGC 1 cut(s) 1171
BshFI GGCC 2 cut(s) 211, 288
BshNI GGYRCC 2 cut(s) 76, 464
BsiHKAI GWGCWC 1 cut(s) 616
BsiSI CCGG 1 cut(s) 207
BslFI GGGAC 1 cut(s) 110
BslI CCNNNNNNNGG 3 cut(s) 386, 566, 776
BsmAI GTCTC 2 cut(s) 523, 1049
BsmFI GGGAC 1 cut(s) 110
BsmI GAATGC 1 cut(s) 1114
BsnI GGCC 2 cut(s) 211, 288
Bsp119I TTCGAA 1 cut(s) 1071
Bsp1286I GDGCHC 2 cut(s) 469, 616
Bsp143I GATC 1 cut(s) 6
BspACI CCGC 3 cut(s) 411, 564, 1065
BspANI GGCC 2 cut(s) 211, 288
BspCNI CTCAG 1 cut(s) 27
BspLI GGNNCC 5 cut(s) 78, 298, 466, 484, 558
BspT104I TTCGAA 1 cut(s) 1071
BspT107I GGYRCC 2 cut(s) 76, 464
BsrDI GCAATG 2 cut(s) 114, 792
BsrI ACTGG 2 cut(s) 357, 719
BssMI GATC 1 cut(s) 6
Bst4CI ACNGT 4 cut(s) 124, 590, 712, 1077
Bst6I CTCTTC 4 cut(s) 169, 208, 1025, 1098
BstBI TTCGAA 1 cut(s) 1071
BstDEI CTNAG 2 cut(s) 14, 548
BstF5I GGATG 5 cut(s) 140, 191, 906, 918, 1057
BstKTI GATC 1 cut(s) 9
BstMAI GTCTC 2 cut(s) 523, 1049
BstMBI GATC 1 cut(s) 6
BstMWI GCNNNNNNNGC 3 cut(s) 294, 701, 1181
BstSCI CCNGG 1 cut(s) 206
BstSLI GKGCMC 1 cut(s) 469
BstV1I GCAGC 1 cut(s) 1171
BstV2I GAAGAC 1 cut(s) 33
BstX2I RGATCY 1 cut(s) 6
BstXI CCANNNNNNTGG 1 cut(s) 654
BstYI RGATCY 1 cut(s) 6
Bsu36I CCTNAGG 1 cut(s) 14
BsuRI GGCC 2 cut(s) 211, 288
BtgZI GCGATG 1 cut(s) 763
BtsCI GGATG 5 cut(s) 140, 191, 906, 918, 1057
BtsI GCAGTG 1 cut(s) 324
BtsIMutI CAGTG 6 cut(s) 59, 324, 595, 717, 726, 1082
Cfr13I GGNCC 2 cut(s) 209, 483
Csp6I GTAC 2 cut(s) 77, 858
CspCI CAANNNNNGTGG 2 cut(s) 714, 749
CviAII CATG 2 cut(s) 151, 934
CviQI GTAC 2 cut(s) 77, 858
DdeI CTNAG 2 cut(s) 14, 548
DpnI GATC 1 cut(s) 8
DpnII GATC 1 cut(s) 6
DraI TTTAAA 1 cut(s) 433
Eam1104I CTCTTC 4 cut(s) 169, 208, 1025, 1098
EarI CTCTTC 4 cut(s) 169, 208, 1025, 1098
Ecl136II GAGCTC 1 cut(s) 614
Eco24I GRGCYC 1 cut(s) 616
Eco47I GGWCC 1 cut(s) 483
Eco53kI GAGCTC 1 cut(s) 614
Eco57I CTGAAG 1 cut(s) 543
Eco81I CCTNAGG 1 cut(s) 14
EcoICRI GAGCTC 1 cut(s) 614
EcoT38I GRGCYC 1 cut(s) 616
FaeI CATG 2 cut(s) 154, 937
FaiI YATR 3 cut(s) 152, 746, 935
FalI AAGNNNNNCTT 2 cut(s) 663, 695
FaqI GGGAC 1 cut(s) 110
FatI CATG 2 cut(s) 150, 933
FauI CCCGC 1 cut(s) 1058
Fnu4HI GCNGC 1 cut(s) 1185
FokI GGATG 5 cut(s) 127, 178, 913, 925, 1064
FriOI GRGCYC 1 cut(s) 616
Fsp4HI GCNGC 1 cut(s) 1185
FspBI CTAG 2 cut(s) 993, 1146
GluI GCNGC 1 cut(s) 1185
HaeIII GGCC 2 cut(s) 211, 288
HapII CCGG 1 cut(s) 207
Hin1II CATG 2 cut(s) 154, 937
HinfI GANTC 5 cut(s) 476, 760, 1019, 1139, 1157
HpaII CCGG 1 cut(s) 207
HphI GGTGA 4 cut(s) 164, 509, 890, 1032
Hpy166II GTNNAC 2 cut(s) 586, 1134
Hpy188I TCNGA 4 cut(s) 421, 523, 1100, 1162
Hpy188III TCNNGA 3 cut(s) 23, 687, 984
Hpy8I GTNNAC 2 cut(s) 586, 1134
HpyAV CCTTC 5 cut(s) 222, 518, 847, 912, 934
HpyCH4III ACNGT 4 cut(s) 124, 590, 712, 1077
HpyCH4V TGCA 1 cut(s) 1168
HpyF10VI GCNNNNNNNGC 3 cut(s) 294, 701, 1181
HpyF3I CTNAG 2 cut(s) 14, 548
Hsp92II CATG 2 cut(s) 154, 937
KpnI GGTACC 1 cut(s) 80
Kzo9I GATC 1 cut(s) 6
LmnI GCTCC 4 cut(s) 302, 544, 556, 611
Lsp1109I GCAGC 1 cut(s) 1171
MaeI CTAG 2 cut(s) 993, 1146
MaeIII GTNAC 1 cut(s) 721
MalI GATC 1 cut(s) 8
MboI GATC 1 cut(s) 6
MflI RGATCY 1 cut(s) 6
MhlI GDGCHC 2 cut(s) 469, 616
MluCI AATT 9 cut(s) 196, 331, 383, 427, 593, 604, 690, 887, 1163
MmeI TCCRAC 2 cut(s) 534, 948
MseI TTAA 4 cut(s) 432, 797, 804, 893
MslI CAYNNNNRTG 2 cut(s) 149, 621
MspI CCGG 1 cut(s) 207
MspR9I CCNGG 1 cut(s) 208
Mva1269I GAATGC 1 cut(s) 1114
MwoI GCNNNNNNNGC 3 cut(s) 294, 701, 1181
NciI CCSGG 1 cut(s) 208
NdeII GATC 1 cut(s) 6
NlaIII CATG 2 cut(s) 154, 937
NlaIV GGNNCC 5 cut(s) 78, 298, 466, 484, 558
NmuCI GTSAC 1 cut(s) 721
NspV TTCGAA 1 cut(s) 1071
PctI GAATGC 1 cut(s) 1114
PfeI GAWTC 5 cut(s) 476, 760, 1019, 1139, 1157
PflMI CCANNNNNTGG 1 cut(s) 776
PkrI GCNGC 1 cut(s) 1186
Psp124BI GAGCTC 1 cut(s) 616
PspN4I GGNNCC 5 cut(s) 78, 298, 466, 484, 558
PspPI GGNCC 2 cut(s) 209, 483
PsuI RGATCY 1 cut(s) 6
RsaI GTAC 2 cut(s) 78, 859
RsaNI GTAC 2 cut(s) 77, 858
RseI CAYNNNNRTG 2 cut(s) 149, 621
SacI GAGCTC 1 cut(s) 616
SaqAI TTAA 4 cut(s) 432, 797, 804, 893
SatI GCNGC 1 cut(s) 1185
Sau3AI GATC 1 cut(s) 6
Sau96I GGNCC 2 cut(s) 209, 483
ScrFI CCNGG 1 cut(s) 208
SduI GDGCHC 2 cut(s) 469, 616
SfuI TTCGAA 1 cut(s) 1071
SinI GGWCC 1 cut(s) 483
SmiMI CAYNNNNRTG 2 cut(s) 149, 621
SmlI CTYRAG 1 cut(s) 272
SmoI CTYRAG 1 cut(s) 272
Sse9I AATT 9 cut(s) 196, 331, 383, 427, 593, 604, 690, 887, 1163
SsiI CCGC 3 cut(s) 411, 564, 1065
SspMI CTAG 2 cut(s) 993, 1146
SstI GAGCTC 1 cut(s) 616
StyD4I CCNGG 1 cut(s) 206
TaaI ACNGT 4 cut(s) 124, 590, 712, 1077
TaqI TCGA 1 cut(s) 1071
TasI AATT 9 cut(s) 196, 331, 383, 427, 593, 604, 690, 887, 1163
TfiI GAWTC 5 cut(s) 476, 760, 1019, 1139, 1157
Tru1I TTAA 4 cut(s) 432, 797, 804, 893
Tru9I TTAA 4 cut(s) 432, 797, 804, 893
TscAI CASTG 6 cut(s) 66, 331, 595, 717, 726, 1082
TseFI GTSAC 1 cut(s) 721
TseI GCWGC 1 cut(s) 1184
Tsp45I GTSAC 1 cut(s) 721
TspDTI ATGAA 4 cut(s) 17, 755, 971, 992
TspGWI ACGGA 1 cut(s) 475
TspRI CASTG 6 cut(s) 66, 331, 595, 717, 726, 1082
Van91I CCANNNNNTGG 1 cut(s) 776
VpaK11BI GGWCC 1 cut(s) 483
XapI RAATTY 1 cut(s) 593
XcmI CCANNNNNNNNNTGG 1 cut(s) 476
XspI CTAG 2 cut(s) 993, 1146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.