Rorug07G0107000

Belongs to the pyruvate kinase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Forward (+)
8364767 .. 8367677
2911 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0107000.1

Sequence Viewer

Length: 726 bp
ATGTCGAACTTGGAAGATGTGCCCTCCGCCGATCTTTTCAGTGAGGTGCTTCGTCGTTTGAAGTGCTCCACCAAGCCTGACAAGCGCCTCATTCTTGTGGGTCCACCTGGCTCAGGAAAAGGTACCCAATCGCCTGTTATTAAGGACGAGTACTGCTTGTGCCACTTGGCTACCGGCGATATGTTGAGATCCGCTGTTGCTGCTAAGACTCCTCTTGGCGTTAAAGCTAAGGAGGCTATGGAGAAGGGAGAACTTGTTTCTGATGACCTGGTTGTGGGCATCATTGATGAAGCATTGAAGAAGCCTTCTTGCCAGAAAGGTTTCATTCTTGATGGATTTCCGAGAACTGTGGTCCAAGCACAGAAGCTAGATGAGATGCTCCAAAATCGTGGAGTTAAGGTTGATAAGGTGCTCAACTTTGCAATTGATGACTCAATCTTGGAAGAGAGGATTACAGGTCGCTGGATTCACCCATCCAGTGGCAGAAGCTATCACACAAAATTTGCACCACCCAAGGTTCCTGGTGTTGATGATGTAACTGGAGAGCCTCTCATTCAACGTAAGGATGATACTGCAGCCGTTCTCAAGTCAAGGCTGGAAGCATTTCACAAGCAAACTGAACCAGTTATTGATTATTATTCCAAGAAAGGAGTTGTTGCCAATCTTCCAGCTGAGAAACCTCCGAAAGAGGTCACTGTTGAGGTTCAGAAAGTGCTCTCGTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000287 GO:0003006 GO:0003674 GO:0003824 GO:0004743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006082 GO:0006090 GO:0006091 GO:0006096 GO:0006139 GO:0006163 GO:0006164 GO:0006165 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006754 GO:0006757 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009132 GO:0009135 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009166 GO:0009167 GO:0009168 GO:0009179 GO:0009185 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009791 GO:0009987 GO:0010154 GO:0010431 GO:0016052 GO:0016053 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0018130 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019439 GO:0019637 GO:0019693 GO:0019752 GO:0021700 GO:0022414 GO:0030955 GO:0031420 GO:0032501 GO:0032502 GO:0032504 GO:0032787 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0042866 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046031 GO:0046034 GO:0046390 GO:0046394 GO:0046434 GO:0046483 GO:0046496 GO:0046700 GO:0046872 GO:0046939 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0051186 GO:0051188 GO:0055086 GO:0061458 GO:0071695 GO:0071704 GO:0072330 GO:0072521 GO:0072522 GO:0072524 GO:0072525 GO:0090407 GO:1901135 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576
Pfam Domains
Protein Families

Protein Analysis

241

Amino Acids

26.39

Weight (kDa)

8.24

Isoelectric Point (pI)

41.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADK PF00406 32 - 217 1.9e-59 Adenylate kinase
AAA_17 PF13207 33 - 153 4.3e-25 AAA domain
ADK_lid PF05191 154 - 189 1.1e-17 Adenylate kinase, active site lid
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 122
AccB1I GGYRCC 1 cut(s) 122
AccB7I CCANNNNNTGG 1 cut(s) 479
AciI CCGC 2 cut(s) 27, 192
AclWI GGATC 1 cut(s) 183
AcsI RAATTY 1 cut(s) 500
AfaI GTAC 2 cut(s) 124, 152
AfiI CCNNNNNNNGG 3 cut(s) 113, 274, 479
AgsI TTSAA 3 cut(s) 61, 298, 557
AjnI CCWGG 3 cut(s) 106, 267, 520
AluBI AGCT 4 cut(s) 227, 367, 489, 671
AluI AGCT 4 cut(s) 227, 367, 489, 671
Alw21I GWGCWC 3 cut(s) 68, 414, 717
AlwI GGATC 1 cut(s) 183
ApeKI GCWGC 2 cut(s) 200, 575
ApoI RAATTY 1 cut(s) 500
Asp700I GAANNNNTTC 2 cut(s) 320, 603
Asp718I GGTACC 1 cut(s) 122
AspLEI GCGC 1 cut(s) 87
AspS9I GGNCC 2 cut(s) 101, 352
AsuHPI GGTGA 1 cut(s) 461
AvaII GGWCC 2 cut(s) 101, 352
BaeGI GKGCMC 1 cut(s) 24
BanI GGYRCC 1 cut(s) 122
Bbv12I GWGCWC 3 cut(s) 68, 414, 717
BbvI GCAGC 2 cut(s) 187, 587
BccI CCATC 2 cut(s) 326, 481
BceAI ACGGC 1 cut(s) 563
BciT130I CCWGG 3 cut(s) 108, 269, 522
BfaI CTAG 1 cut(s) 368
BfmI CTRYAG 1 cut(s) 573
BfoI RGCGCY 1 cut(s) 88
BisI GCNGC 2 cut(s) 201, 576
BlsI GCNGC 2 cut(s) 202, 577
BmcAI AGTACT 1 cut(s) 152
Bme1390I CCNGG 3 cut(s) 108, 269, 522
Bme18I GGWCC 2 cut(s) 101, 352
BmgT120I GGNCC 2 cut(s) 101, 352
BmiI GGNNCC 3 cut(s) 102, 124, 519
BmrFI CCNGG 3 cut(s) 108, 269, 522
BmsI GCATC 2 cut(s) 288, 366
BplI GAGNNNNNCTC 2 cut(s) 534, 566
BpmI CTGGAG 1 cut(s) 561
Bpu10I CCTNAGC 2 cut(s) 112, 228
BpuEI CTTGAG 1 cut(s) 569
BsaJI CCNNGG 1 cut(s) 513
BsaXI ACNNNNNCTCC 4 cut(s) 240, 270, 384, 414
Bsc4I CCNNNNNNNGG 3 cut(s) 113, 274, 479
Bse118I RCCGGY 1 cut(s) 173
Bse1I ACTGG 3 cut(s) 477, 544, 623
BseBI CCWGG 3 cut(s) 108, 269, 522
BseDI CCNNGG 1 cut(s) 513
BseGI GGATG 2 cut(s) 473, 571
BseLI CCNNNNNNNGG 3 cut(s) 113, 274, 479
BseMII CTCAG 2 cut(s) 126, 663
BseNI ACTGG 3 cut(s) 477, 544, 623
BseRI GAGGAG 1 cut(s) 201
BseSI GKGCMC 1 cut(s) 24
BseXI GCAGC 2 cut(s) 187, 587
BshNI GGYRCC 1 cut(s) 122
BsiHKAI GWGCWC 3 cut(s) 68, 414, 717
BsiSI CCGG 1 cut(s) 174
BslI CCNNNNNNNGG 3 cut(s) 113, 274, 479
Bsp1286I GDGCHC 4 cut(s) 24, 68, 414, 717
Bsp143I GATC 2 cut(s) 31, 188
BspACI CCGC 2 cut(s) 27, 192
BspCNI CTCAG 2 cut(s) 125, 664
BspLI GGNNCC 3 cut(s) 102, 124, 519
BspMAI CTGCAG 1 cut(s) 577
BspPI GGATC 1 cut(s) 183
BspT107I GGYRCC 1 cut(s) 122
BsrFI RCCGGY 1 cut(s) 173
BsrI ACTGG 3 cut(s) 477, 544, 623
BssAI RCCGGY 1 cut(s) 173
BssECI CCNNGG 1 cut(s) 513
BssMI GATC 2 cut(s) 31, 188
BssT1I CCWWGG 1 cut(s) 513
Bst2UI CCWGG 3 cut(s) 108, 269, 522
Bst4CI ACNGT 2 cut(s) 349, 697
Bst6I CTCTTC 1 cut(s) 438
BstDEI CTNAG 4 cut(s) 112, 204, 228, 672
BstENI CCTNNNNNAGG 1 cut(s) 111
BstF5I GGATG 2 cut(s) 473, 571
BstH2I RGCGCY 1 cut(s) 88
BstHHI GCGC 1 cut(s) 87
BstKTI GATC 2 cut(s) 34, 191
BstMBI GATC 2 cut(s) 31, 188
BstMWI GCNNNNNNNGC 3 cut(s) 82, 200, 233
BstNI CCWGG 3 cut(s) 108, 269, 522
BstSCI CCNGG 3 cut(s) 106, 267, 520
BstSFI CTRYAG 1 cut(s) 573
BstSLI GKGCMC 1 cut(s) 24
BstV1I GCAGC 2 cut(s) 187, 587
BstX2I RGATCY 1 cut(s) 188
BstXI CCANNNNNNTGG 1 cut(s) 389
BstYI RGATCY 1 cut(s) 188
BtsCI GGATG 2 cut(s) 473, 571
BtsIMutI CAGTG 3 cut(s) 46, 484, 693
CfoI GCGC 1 cut(s) 87
Cfr10I RCCGGY 1 cut(s) 173
Cfr13I GGNCC 2 cut(s) 101, 352
CsiI ACCWGGT 1 cut(s) 267
Csp6I GTAC 2 cut(s) 123, 151
CviQI GTAC 2 cut(s) 123, 151
DdeI CTNAG 4 cut(s) 112, 204, 228, 672
DpnI GATC 2 cut(s) 33, 190
DpnII GATC 2 cut(s) 31, 188
Eam1104I CTCTTC 1 cut(s) 438
EarI CTCTTC 1 cut(s) 438
EciI GGCGGA 1 cut(s) 16
Eco130I CCWWGG 1 cut(s) 513
Eco47I GGWCC 2 cut(s) 101, 352
EcoNI CCTNNNNNAGG 1 cut(s) 111
EcoRII CCWGG 3 cut(s) 106, 267, 520
EcoT14I CCWWGG 1 cut(s) 513
ErhI CCWWGG 1 cut(s) 513
FaiI YATR 2 cut(s) 182, 239
Fnu4HI GCNGC 2 cut(s) 201, 576
FokI GGATG 2 cut(s) 460, 578
Fsp4HI GCNGC 2 cut(s) 201, 576
FspBI CTAG 1 cut(s) 368
GlaI GCGC 1 cut(s) 86
GluI GCNGC 2 cut(s) 201, 576
GsuI CTGGAG 1 cut(s) 561
HaeII RGCGCY 1 cut(s) 88
HapII CCGG 1 cut(s) 174
HhaI GCGC 1 cut(s) 87
Hin6I GCGC 1 cut(s) 85
HinP1I GCGC 1 cut(s) 85
HinfI GANTC 3 cut(s) 208, 431, 466
HpaII CCGG 1 cut(s) 174
HphI GGTGA 1 cut(s) 461
Hpy166II GTNNAC 1 cut(s) 104
Hpy188I TCNGA 4 cut(s) 262, 342, 684, 708
Hpy188III TCNNGA 2 cut(s) 114, 329
Hpy8I GTNNAC 1 cut(s) 104
Hpy99I CGWCG 2 cut(s) 57, 724
HpyAV CCTTC 2 cut(s) 238, 315
HpyCH4III ACNGT 2 cut(s) 349, 697
HpyCH4IV ACGT 1 cut(s) 559
HpyCH4V TGCA 3 cut(s) 422, 506, 575
HpyF10VI GCNNNNNNNGC 3 cut(s) 82, 200, 233
HpyF3I CTNAG 4 cut(s) 112, 204, 228, 672
HpySE526I ACGT 1 cut(s) 559
HspAI GCGC 1 cut(s) 85
KpnI GGTACC 1 cut(s) 126
Kzo9I GATC 2 cut(s) 31, 188
LmnI GCTCC 2 cut(s) 71, 384
Lsp1109I GCAGC 2 cut(s) 187, 587
LweI GCATC 2 cut(s) 288, 366
MabI ACCWGGT 1 cut(s) 267
MaeI CTAG 1 cut(s) 368
MaeII ACGT 1 cut(s) 559
MaeIII GTNAC 2 cut(s) 535, 691
MalI GATC 2 cut(s) 33, 190
MboI GATC 2 cut(s) 31, 188
MboII GAAGA 4 cut(s) 26, 310, 455, 656
MfeI CAATTG 1 cut(s) 423
MflI RGATCY 1 cut(s) 188
MhlI GDGCHC 4 cut(s) 24, 68, 414, 717
MluCI AATT 2 cut(s) 423, 500
MlyI GAGTC 2 cut(s) 202, 425
MroXI GAANNNNTTC 2 cut(s) 320, 603
MseI TTAA 3 cut(s) 141, 222, 396
MslI CAYNNNNRTG 1 cut(s) 95
MspA1I CMGCKG 2 cut(s) 194, 671
MspI CCGG 1 cut(s) 174
MspR9I CCNGG 3 cut(s) 108, 269, 522
MunI CAATTG 1 cut(s) 423
MvaI CCWGG 3 cut(s) 108, 269, 522
MwoI GCNNNNNNNGC 3 cut(s) 82, 200, 233
NdeII GATC 2 cut(s) 31, 188
NlaIV GGNNCC 3 cut(s) 102, 124, 519
NmuCI GTSAC 1 cut(s) 691
PdmI GAANNNNTTC 2 cut(s) 320, 603
PfeI GAWTC 1 cut(s) 466
PflMI CCANNNNNTGG 1 cut(s) 479
PkrI GCNGC 2 cut(s) 202, 577
PleI GAGTC 2 cut(s) 202, 425
PpsI GAGTC 2 cut(s) 202, 425
Psp6I CCWGG 3 cut(s) 106, 267, 520
PspGI CCWGG 3 cut(s) 106, 267, 520
PspN4I GGNNCC 3 cut(s) 102, 124, 519
PspPI GGNCC 2 cut(s) 101, 352
PstI CTGCAG 1 cut(s) 577
PsuI RGATCY 1 cut(s) 188
PvuII CAGCTG 1 cut(s) 671
RsaI GTAC 2 cut(s) 124, 152
RsaNI GTAC 2 cut(s) 123, 151
RseI CAYNNNNRTG 1 cut(s) 95
SaqAI TTAA 3 cut(s) 141, 222, 396
SatI GCNGC 2 cut(s) 201, 576
Sau3AI GATC 2 cut(s) 31, 188
Sau96I GGNCC 2 cut(s) 101, 352
ScaI AGTACT 1 cut(s) 152
SchI GAGTC 2 cut(s) 202, 425
ScrFI CCNGG 3 cut(s) 108, 269, 522
SduI GDGCHC 4 cut(s) 24, 68, 414, 717
SexAI ACCWGGT 1 cut(s) 267
SfaNI GCATC 2 cut(s) 288, 366
SfcI CTRYAG 1 cut(s) 573
SinI GGWCC 2 cut(s) 101, 352
SmiMI CAYNNNNRTG 1 cut(s) 95
SmlI CTYRAG 1 cut(s) 584
SmoI CTYRAG 1 cut(s) 584
Sse9I AATT 2 cut(s) 423, 500
SsiI CCGC 2 cut(s) 27, 192
SspMI CTAG 1 cut(s) 368
StyD4I CCNGG 3 cut(s) 106, 267, 520
StyI CCWWGG 1 cut(s) 513
TaaI ACNGT 2 cut(s) 349, 697
TaiI ACGT 1 cut(s) 562
TaqI TCGA 1 cut(s) 5
TasI AATT 2 cut(s) 423, 500
TatI WGTACW 1 cut(s) 150
TfiI GAWTC 1 cut(s) 466
Tru1I TTAA 3 cut(s) 141, 222, 396
Tru9I TTAA 3 cut(s) 141, 222, 396
TscAI CASTG 3 cut(s) 46, 484, 700
TseFI GTSAC 1 cut(s) 691
TseI GCWGC 2 cut(s) 200, 575
Tsp45I GTSAC 1 cut(s) 691
TspDTI ATGAA 2 cut(s) 303, 313
TspRI CASTG 3 cut(s) 46, 484, 700
Van91I CCANNNNNTGG 1 cut(s) 479
VpaK11BI GGWCC 2 cut(s) 101, 352
XagI CCTNNNNNAGG 1 cut(s) 111
XapI RAATTY 1 cut(s) 500
XmnI GAANNNNTTC 2 cut(s) 320, 603
XspI CTAG 1 cut(s) 368
ZrmI AGTACT 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.