Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001739

Physical Location & Seq

Genomic Coordinates Reverse (-)

56742530 .. 56744303

Gene Structure 1774 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00262770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGACTCATATTCTAAGTGGATCTCTATTTTTCAAACAATTGCTAGACCCTTCATCGTTATTTACGGCTGTTGGAATATCAAAACCCTTGTCCTTGAGTTCTTGTGCATCTGCATTGTGTAAAGTTTGTGAAGATGTTTCTGCAGTGATGTATGGACCATTAAATTTGCAGATATTGAGGTGGATAGGAGAGGGTCTGGAGAGCAGTCACTTCCCTTCGGAAAATGAGGAAGAAGTTGTTTGTGCGGAACTGGGCATCAAGCTCGCTTGTGGAAATGCCTTTGTTGATGTGGACTTCTCGGCAGCTTCGATCTTCCCACCAAAGAATATGGATGCGTATGACGGCGTTCCTATTCGAAAAAGAATGACATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0007154 GO:0007165 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0023052 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0033036 GO:0033218 GO:0033365 GO:0034504 GO:0034613 GO:0038023 GO:0042277 GO:0042802 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0050896 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0060089 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Xpo1

Protein Analysis

124

Amino Acids

13.39

Weight (kDa)

4.85

Isoelectric Point (pI)

51.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32440
fragaria_vesca	FvH4_5g21480 FvH4_5g21480 FvH4_5g21480
malus_domestica	MD06G1029300.v1.1
prunus_persica	Prupe.5G042500_v2.0.a1 Prupe.5G042500_v2.0.a1 Prupe.5G042500_v2.0.a1 Prupe.5G042500_v2.0.a1
pyrus_communis	pycom06g02360
rosa_chinensis	RchiOBHm_Chr1g0366171 RchiOBHm_Chr7g0208881 RchiOBHm_Chr7g0218031
rosa_laevigata	RLG00000001114 RLG00000003187 RLG00000013234
rosa_multiflora	Rmu_sc0000532.1_g000006 Rmu_sc0001141.1_g000017 Rmu_sc0001879.1_g000041 Rmu_sc0003387.1_g000004 Rmu_sc0003662.1_g000006 Rmu_sc0005320.1_g000008 Rmu_sc0016359.1_g000002
rosa_roxburghii	Rroxscaffold_2G00090500 Rroxscaffold_3G00241470 Rroxscaffold_3G00250080 Rroxscaffold_3G00262770
rosa_rugosa	Rorug07G0107000 Rorug07G0107100 Rorug07G0107200 Rorug07G0312100
rosa_samantha	Rh1CG098000 Rh1DG105400 Rh3BG280200 Rh3DG190500 Rh4AG144100 Rh4CG150800 Rh5BG196800 Rh7AG242100 Rh7BG008700 Rh7BG236900 Rh7CG257000 Rh7CG484900 Rh7DG248000 Rh7DG453300
rosa_wichuraiana	Rw7G020500 Rw7G038690 Rw7G041650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	245
AclWI	GGATC	1 cut(s)	28
AcsI	RAATTY	1 cut(s)	163
AgsI	TTSAA	1 cut(s)	34
AluBI	AGCT	2 cut(s)	262, 305
AluI	AGCT	2 cut(s)	262, 305
AlwI	GGATC	1 cut(s)	28
ApeKI	GCWGC	1 cut(s)	302
ApoI	RAATTY	1 cut(s)	163
ArsI	GACNNNNNNTTYG	2 cut(s)	74, 106
AspS9I	GGNCC	1 cut(s)	155
AsuII	TTCGAA	1 cut(s)	355
AvaII	GGWCC	1 cut(s)	155
BbvI	GCAGC	1 cut(s)	314
BceAI	ACGGC	2 cut(s)	81, 358
BcgI	CGANNNNNNTGC	2 cut(s)	244, 278
BfaI	CTAG	1 cut(s)	44
BfmI	CTRYAG	1 cut(s)	141
BisI	GCNGC	1 cut(s)	303
BlsI	GCNGC	1 cut(s)	304
Bme18I	GGWCC	1 cut(s)	155
BmgT120I	GGNCC	1 cut(s)	155
BmrI	ACTGGG	1 cut(s)	260
BmsI	GCATC	3 cut(s)	116, 264, 322
BmuI	ACTGGG	1 cut(s)	260
BpmI	CTGGAG	1 cut(s)	218
Bpu14I	TTCGAA	1 cut(s)	355
BpuEI	CTTGAG	1 cut(s)	115
Bse1I	ACTGG	1 cut(s)	255
BseGI	GGATG	1 cut(s)	337
BseNI	ACTGG	1 cut(s)	255
BseXI	GCAGC	1 cut(s)	314
Bsp119I	TTCGAA	1 cut(s)	355
Bsp143I	GATC	2 cut(s)	20, 309
BspACI	CCGC	1 cut(s)	245
BspMAI	CTGCAG	1 cut(s)	145
BspPI	GGATC	1 cut(s)	28
BspT104I	TTCGAA	1 cut(s)	355
BsrI	ACTGG	1 cut(s)	255
BssMI	GATC	2 cut(s)	20, 309
BstBI	TTCGAA	1 cut(s)	355
BstC8I	GCNNGC	1 cut(s)	264
BstDEI	CTNAG	1 cut(s)	14
BstF5I	GGATG	1 cut(s)	337
BstKTI	GATC	2 cut(s)	23, 312
BstMBI	GATC	2 cut(s)	20, 309
BstSFI	CTRYAG	1 cut(s)	141
BstV1I	GCAGC	1 cut(s)	314
BstX2I	RGATCY	1 cut(s)	20
BstYI	RGATCY	1 cut(s)	20
BtsCI	GGATG	1 cut(s)	337
BtsI	GCAGTG	1 cut(s)	150
BtsIMutI	CAGTG	1 cut(s)	150
Cac8I	GCNNGC	1 cut(s)	264
Cfr13I	GGNCC	1 cut(s)	155
CviJI	RGCY	3 cut(s)	68, 262, 305
CviKI_1	RGCY	3 cut(s)	68, 262, 305
DdeI	CTNAG	1 cut(s)	14
DpnI	GATC	2 cut(s)	22, 311
DpnII	GATC	2 cut(s)	20, 309
Eco47I	GGWCC	1 cut(s)	155
FaiI	YATR	4 cut(s)	9, 153, 329, 339
Fnu4HI	GCNGC	1 cut(s)	303
FokI	GGATG	1 cut(s)	344
Fsp4HI	GCNGC	1 cut(s)	303
FspBI	CTAG	1 cut(s)	44
GluI	GCNGC	1 cut(s)	303
GsuI	CTGGAG	1 cut(s)	218
HinfI	GANTC	1 cut(s)	4
Hpy166II	GTNNAC	1 cut(s)	292
Hpy188I	TCNGA	1 cut(s)	220
Hpy188III	TCNNGA	1 cut(s)	197
Hpy8I	GTNNAC	1 cut(s)	292
HpyAV	CCTTC	2 cut(s)	60, 225
HpyCH4V	TGCA	4 cut(s)	107, 113, 143, 169
HpyF3I	CTNAG	1 cut(s)	14
Kzo9I	GATC	2 cut(s)	20, 309
LpnPI	CCDG	2 cut(s)	182, 236
Lsp1109I	GCAGC	1 cut(s)	314
LweI	GCATC	3 cut(s)	116, 264, 322
MaeI	CTAG	1 cut(s)	44
MaeIII	GTNAC	1 cut(s)	206
MalI	GATC	2 cut(s)	22, 311
MboI	GATC	2 cut(s)	20, 309
MboII	GAAGA	3 cut(s)	143, 242, 304
MfeI	CAATTG	1 cut(s)	38
MflI	RGATCY	1 cut(s)	20
MluCI	AATT	2 cut(s)	38, 163
MmeI	TCCRAC	1 cut(s)	52
MnlI	CCTC	3 cut(s)	171, 184, 220
MseI	TTAA	1 cut(s)	161
MunI	CAATTG	1 cut(s)	38
NdeII	GATC	2 cut(s)	20, 309
NmeAIII	GCCGAG	1 cut(s)	278
NmuCI	GTSAC	1 cut(s)	206
NspV	TTCGAA	1 cut(s)	355
PcsI	WCGNNNNNNNCGW	1 cut(s)	305
PkrI	GCNGC	1 cut(s)	304
PspPI	GGNCC	1 cut(s)	155
PstI	CTGCAG	1 cut(s)	145
PsuI	RGATCY	1 cut(s)	20
SaqAI	TTAA	1 cut(s)	161
SatI	GCNGC	1 cut(s)	303
Sau3AI	GATC	2 cut(s)	20, 309
Sau96I	GGNCC	1 cut(s)	155
SetI	ASST	3 cut(s)	182, 264, 307
SfaNI	GCATC	3 cut(s)	116, 264, 322
SfcI	CTRYAG	1 cut(s)	141
SfuI	TTCGAA	1 cut(s)	355
SinI	GGWCC	1 cut(s)	155
SmlI	CTYRAG	1 cut(s)	94
SmoI	CTYRAG	1 cut(s)	94
Sse9I	AATT	2 cut(s)	38, 163
SsiI	CCGC	1 cut(s)	245
SspMI	CTAG	1 cut(s)	44
TaqI	TCGA	2 cut(s)	308, 355
TasI	AATT	2 cut(s)	38, 163
Tru1I	TTAA	1 cut(s)	161
Tru9I	TTAA	1 cut(s)	161
TscAI	CASTG	1 cut(s)	150
TseFI	GTSAC	1 cut(s)	206
TseI	GCWGC	1 cut(s)	302
Tsp45I	GTSAC	1 cut(s)	206
TspDTI	ATGAA	1 cut(s)	42
TspRI	CASTG	1 cut(s)	150
VpaK11BI	GGWCC	1 cut(s)	155
XapI	RAATTY	1 cut(s)	163
XspI	CTAG	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.