Rh1DG105400

ATP-dependent RNA helicase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0001739
Physical Location & Seq
Reverse (-)
19667387 .. 19671649
4263 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG105400.1

Sequence Viewer

Length: 417 bp
ATGAACTCATTCAGAAGACACGCACATGTTCAAAAGAGCATTAGGATTGTTACTCATCCAAAGGAAGTTTTACCTCCTGATCTTGGGGCATCTATTTATGCTATAGCCTGCGTTCTATCTTATGATGGTTTATCTGGGATTCCATTGCCAAAGCCTATGGATTTGCCGAATTCAGATTTAGAAGAACTTGAGATCGGTAAAGATGGAAAGGCACAGTTTAAAGTGACAGGAAATAATGCAGCAAAATCAAAGGAGCCATTACGTCAGAGAGTTTGTCAGAGGTCTCTATCGCGAGCTACTGATTTACCTGCCTTAAATGGATTTGCAAAGTTGTGTGACGACCCATCAATTCAGAGTGTTCCCCCATCGGCTTTCGCGAACACTACTGATTTACCTGCCTTCATAACGCCTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0006139 GO:0006259 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007276 GO:0007281 GO:0007283 GO:0007286 GO:0007292 GO:0007346 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0009994 GO:0010033 GO:0010467 GO:0012505 GO:0016043 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019899 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0032392 GO:0032501 GO:0032502 GO:0032504 GO:0032508 GO:0032991 GO:0034097 GO:0034458 GO:0034612 GO:0034641 GO:0035770 GO:0035821 GO:0042221 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043900 GO:0043902 GO:0043903 GO:0044237 GO:0044238 GO:0044260 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0044788 GO:0044794 GO:0044827 GO:0044829 GO:0045069 GO:0045070 GO:0045786 GO:0045787 GO:0045930 GO:0046483 GO:0048232 GO:0048468 GO:0048477 GO:0048515 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048524 GO:0048599 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050792 GO:0050794 GO:0050896 GO:0051276 GO:0051445 GO:0051446 GO:0051702 GO:0051704 GO:0051726 GO:0051728 GO:0051729 GO:0051817 GO:0051851 GO:0060184 GO:0065007 GO:0070035 GO:0070063 GO:0070555 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:0140098 GO:1901360 GO:1901363 GO:1903900 GO:1903902 GO:1990247 GO:1990904 GO:2000241 GO:2000243
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
DEAD HA2 Helicase_C OB_NTP_bind R3H

Protein Analysis

138

Amino Acids

14.96

Weight (kDa)

7.73

Isoelectric Point (pI)

43.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 316, 403
AccII CGCG 2 cut(s) 292, 377
AcsI RAATTY 1 cut(s) 169
AfiI CCNNNNNNNGG 1 cut(s) 83
AflIII ACRYGT 1 cut(s) 25
AgsI TTSAA 1 cut(s) 32
AluBI AGCT 1 cut(s) 296
AluI AGCT 1 cut(s) 296
Alw26I GTCTC 1 cut(s) 288
ApeKI GCWGC 1 cut(s) 239
ApoI RAATTY 1 cut(s) 169
Asp700I GAANNNNTTC 1 cut(s) 8
BbsI GAAGAC 1 cut(s) 22
BbvI GCAGC 1 cut(s) 251
BccI CCATC 4 cut(s) 119, 197, 352, 373
BcoDI GTCTC 1 cut(s) 288
BfmI CTRYAG 1 cut(s) 102
BfuAI ACCTGC 2 cut(s) 316, 403
BisI GCNGC 1 cut(s) 240
BlsI GCNGC 1 cut(s) 241
BmiI GGNNCC 1 cut(s) 255
BmsI GCATC 1 cut(s) 98
BpiI GAAGAC 1 cut(s) 22
BpuEI CTTGAG 1 cut(s) 209
BsaI GGTCTC 1 cut(s) 288
Bsc4I CCNNNNNNNGG 1 cut(s) 83
Bse3DI GCAATG 1 cut(s) 143
BseGI GGATG 1 cut(s) 55
BseLI CCNNNNNNNGG 1 cut(s) 83
BseMI GCAATG 1 cut(s) 143
BseXI GCAGC 1 cut(s) 251
Bsh1236I CGCG 2 cut(s) 292, 377
BslI CCNNNNNNNGG 1 cut(s) 83
BsmAI GTCTC 1 cut(s) 288
Bso31I GGTCTC 1 cut(s) 288
Bsp143I GATC 2 cut(s) 79, 192
Bsp68I TCGCGA 2 cut(s) 292, 377
BspFNI CGCG 2 cut(s) 292, 377
BspLI GGNNCC 1 cut(s) 255
BspMI ACCTGC 2 cut(s) 316, 403
BspTNI GGTCTC 1 cut(s) 288
BsrDI GCAATG 1 cut(s) 143
BssMI GATC 2 cut(s) 79, 192
Bst4CI ACNGT 1 cut(s) 216
BstC8I GCNNGC 2 cut(s) 109, 294
BstF5I GGATG 1 cut(s) 55
BstFNI CGCG 2 cut(s) 292, 377
BstKTI GATC 2 cut(s) 82, 195
BstMAI GTCTC 1 cut(s) 288
BstMBI GATC 2 cut(s) 79, 192
BstNSI RCATGY 1 cut(s) 29
BstSFI CTRYAG 1 cut(s) 102
BstUI CGCG 2 cut(s) 292, 377
BstV1I GCAGC 1 cut(s) 251
BstV2I GAAGAC 1 cut(s) 22
BtsCI GGATG 1 cut(s) 55
BtuMI TCGCGA 2 cut(s) 292, 377
BveI ACCTGC 2 cut(s) 316, 403
Cac8I GCNNGC 2 cut(s) 109, 294
CviAII CATG 1 cut(s) 26
CviJI RGCY 5 cut(s) 107, 154, 256, 296, 371
CviKI_1 RGCY 5 cut(s) 107, 154, 256, 296, 371
DpnI GATC 2 cut(s) 81, 194
DpnII GATC 2 cut(s) 79, 192
DraI TTTAAA 1 cut(s) 220
Eco31I GGTCTC 1 cut(s) 288
EcoRI GAATTC 1 cut(s) 169
FaeI CATG 1 cut(s) 29
FaiI YATR 6 cut(s) 27, 99, 104, 123, 158, 404
FatI CATG 1 cut(s) 25
Fnu4HI GCNGC 1 cut(s) 240
FokI GGATG 1 cut(s) 42
Fsp4HI GCNGC 1 cut(s) 240
GluI GCNGC 1 cut(s) 240
Hin1II CATG 1 cut(s) 29
HinfI GANTC 1 cut(s) 139
Hpy188I TCNGA 5 cut(s) 14, 175, 267, 279, 354
Hpy188III TCNNGA 3 cut(s) 77, 291, 376
HpyAV CCTTC 1 cut(s) 409
HpyCH4III ACNGT 1 cut(s) 216
HpyCH4IV ACGT 1 cut(s) 262
HpyCH4V TGCA 2 cut(s) 239, 326
HpySE526I ACGT 1 cut(s) 262
Hsp92II CATG 1 cut(s) 29
Kzo9I GATC 2 cut(s) 79, 192
LmnI GCTCC 1 cut(s) 253
LpnPI CCDG 6 cut(s) 90, 120, 121, 213, 321, 408
Lsp1109I GCAGC 1 cut(s) 251
LweI GCATC 1 cut(s) 98
MaeII ACGT 1 cut(s) 262
MaeIII GTNAC 3 cut(s) 49, 223, 335
MalI GATC 2 cut(s) 81, 194
MboI GATC 2 cut(s) 79, 192
MboII GAAGA 2 cut(s) 27, 194
MluCI AATT 2 cut(s) 169, 348
MnlI CCTC 2 cut(s) 84, 273
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 2 cut(s) 219, 314
MslI CAYNNNNRTG 1 cut(s) 24
MvnI CGCG 2 cut(s) 292, 377
NdeII GATC 2 cut(s) 79, 192
NlaIII CATG 1 cut(s) 29
NlaIV GGNNCC 1 cut(s) 255
NmuCI GTSAC 2 cut(s) 223, 335
NruI TCGCGA 2 cut(s) 292, 377
NspI RCATGY 1 cut(s) 29
PciI ACATGT 1 cut(s) 25
PcsI WCGNNNNNNNCGW 1 cut(s) 374
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 1 cut(s) 139
PkrI GCNGC 1 cut(s) 241
PscI ACATGT 1 cut(s) 25
PspN4I GGNNCC 1 cut(s) 255
RruI TCGCGA 2 cut(s) 292, 377
RseI CAYNNNNRTG 1 cut(s) 24
SaqAI TTAA 2 cut(s) 219, 314
SatI GCNGC 1 cut(s) 240
Sau3AI GATC 2 cut(s) 79, 192
SetI ASST 6 cut(s) 76, 265, 284, 298, 310, 397
SfaNI GCATC 1 cut(s) 98
SfcI CTRYAG 1 cut(s) 102
SmiMI CAYNNNNRTG 1 cut(s) 24
SmlI CTYRAG 1 cut(s) 188
SmoI CTYRAG 1 cut(s) 188
Sse9I AATT 2 cut(s) 169, 348
TaaI ACNGT 1 cut(s) 216
TaiI ACGT 1 cut(s) 265
TasI AATT 2 cut(s) 169, 348
TfiI GAWTC 1 cut(s) 139
Tru1I TTAA 2 cut(s) 219, 314
Tru9I TTAA 2 cut(s) 219, 314
TseFI GTSAC 2 cut(s) 223, 335
TseI GCWGC 1 cut(s) 239
Tsp45I GTSAC 2 cut(s) 223, 335
TspDTI ATGAA 2 cut(s) 17, 391
XapI RAATTY 1 cut(s) 169
XceI RCATGY 1 cut(s) 29
XmnI GAANNNNTTC 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.