Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001739

Physical Location & Seq

Genomic Coordinates Forward (+)

31319416 .. 31319805

Gene Structure 390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0312100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGAGCTTTCCAAATTGATAAAGGAAAAGGTGGCATGGAATTGGTGTGATACGGTGGTTAGGGATGATACGGTGGCAACCGTAGCACGGTCTTTCACTCATGTTGCTTCTGCTTTACATATGGAGGCAGAGGCATTGAGAGTGGAGCTTCTTATTGCTATCCATCAAGGATGGTCTGATGTGGATGTAAAGTGTGGTTGTTCAGTTCTTGCAGCGGCAATTGCACATACAGATGAATATTTGTCAGAAGTTGGTCGCATTGTGGAGGATTGTAAGTCTTATATGCAAGCTTTTAATTCTTTACAAGTGAGACATAGTTTCAGAGAAGCAAATGGCGTAGCTAATACGTTAAAGCGTGTTGCTAGATATTCTTATGTTGATGAGTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000287 GO:0003006 GO:0003674 GO:0003824 GO:0004743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006082 GO:0006090 GO:0006091 GO:0006096 GO:0006139 GO:0006163 GO:0006164 GO:0006165 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006754 GO:0006757 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009132 GO:0009135 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009166 GO:0009167 GO:0009168 GO:0009179 GO:0009185 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009791 GO:0009987 GO:0010154 GO:0010431 GO:0016052 GO:0016053 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0018130 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019439 GO:0019637 GO:0019693 GO:0019752 GO:0021700 GO:0022414 GO:0030955 GO:0031420 GO:0032501 GO:0032502 GO:0032504 GO:0032787 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0042866 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046031 GO:0046034 GO:0046390 GO:0046394 GO:0046434 GO:0046483 GO:0046496 GO:0046700 GO:0046872 GO:0046939 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0051186 GO:0051188 GO:0055086 GO:0061458 GO:0071695 GO:0071704 GO:0072330 GO:0072521 GO:0072522 GO:0072524 GO:0072525 GO:0090407 GO:1901135 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00230 ko00620 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04922 ko04930 ko05165 ko05203 ko05230 map00010 map00230 map00620 map01100 map01110 map01120 map01130 map01200 map01230 map04922 map04930 map05165 map05203 map05230

Pfam Domains

Protein Families

PK PK_C

Protein Analysis

129

Amino Acids

14.52

Weight (kDa)

5.69

Isoelectric Point (pI)

17.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	21 - 117	7e-13	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32440
fragaria_vesca	FvH4_5g21480 FvH4_5g21480 FvH4_5g21480
malus_domestica	MD06G1029300.v1.1
prunus_persica	Prupe.5G042500_v2.0.a1 Prupe.5G042500_v2.0.a1 Prupe.5G042500_v2.0.a1 Prupe.5G042500_v2.0.a1
pyrus_communis	pycom06g02360
rosa_chinensis	RchiOBHm_Chr1g0366171 RchiOBHm_Chr7g0208881 RchiOBHm_Chr7g0218031
rosa_laevigata	RLG00000001114 RLG00000003187 RLG00000013234
rosa_multiflora	Rmu_sc0000532.1_g000006 Rmu_sc0001141.1_g000017 Rmu_sc0001879.1_g000041 Rmu_sc0003387.1_g000004 Rmu_sc0003662.1_g000006 Rmu_sc0005320.1_g000008 Rmu_sc0016359.1_g000002
rosa_roxburghii	Rroxscaffold_2G00090500 Rroxscaffold_3G00241470 Rroxscaffold_3G00250080 Rroxscaffold_3G00262770
rosa_rugosa	Rorug07G0107000 Rorug07G0107100 Rorug07G0107200 Rorug07G0312100
rosa_samantha	Rh1CG098000 Rh1DG105400 Rh3BG280200 Rh3DG190500 Rh4AG144100 Rh4CG150800 Rh5BG196800 Rh7AG242100 Rh7BG008700 Rh7BG236900 Rh7CG257000 Rh7CG484900 Rh7DG248000 Rh7DG453300
rosa_wichuraiana	Rw7G020500 Rw7G038690 Rw7G041650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	215
AfiI	CCNNNNNNNGG	1 cut(s)	87
AluBI	AGCT	4 cut(s)	7, 148, 290, 341
AluI	AGCT	4 cut(s)	7, 148, 290, 341
Alw26I	GTCTC	1 cut(s)	304
ApeKI	GCWGC	1 cut(s)	212
BaeI	ACNNNNGTAYC	2 cut(s)	42, 75
BbvI	GCAGC	1 cut(s)	224
BccI	CCATC	2 cut(s)	165, 171
BcoDI	GTCTC	1 cut(s)	304
BfaI	CTAG	1 cut(s)	363
BisI	GCNGC	2 cut(s)	213, 216
BlsI	GCNGC	2 cut(s)	214, 217
Bsc4I	CCNNNNNNNGG	1 cut(s)	87
BseGI	GGATG	3 cut(s)	70, 176, 190
BseLI	CCNNNNNNNGG	1 cut(s)	87
BseXI	GCAGC	1 cut(s)	224
BslI	CCNNNNNNNGG	1 cut(s)	87
BsmAI	GTCTC	1 cut(s)	304
BspACI	CCGC	1 cut(s)	215
Bst4CI	ACNGT	4 cut(s)	55, 73, 82, 90
BstC8I	GCNNGC	1 cut(s)	288
BstF5I	GGATG	3 cut(s)	70, 176, 190
BstMAI	GTCTC	1 cut(s)	304
BstMWI	GCNNNNNNNGC	2 cut(s)	83, 221
BstV1I	GCAGC	1 cut(s)	224
BtsCI	GGATG	3 cut(s)	70, 176, 190
Cac8I	GCNNGC	1 cut(s)	288
CviAII	CATG	2 cut(s)	36, 101
CviJI	RGCY	4 cut(s)	7, 148, 290, 341
CviKI_1	RGCY	4 cut(s)	7, 148, 290, 341
FaeI	CATG	2 cut(s)	39, 104
FaiI	YATR	9 cut(s)	37, 102, 120, 122, 228, 282, 284, 315, 375
FatI	CATG	2 cut(s)	35, 100
FauNDI	CATATG	1 cut(s)	120
Fnu4HI	GCNGC	2 cut(s)	213, 216
FokI	GGATG	3 cut(s)	77, 183, 197
Fsp4HI	GCNGC	2 cut(s)	213, 216
FspBI	CTAG	1 cut(s)	363
GluI	GCNGC	2 cut(s)	213, 216
Hin1II	CATG	2 cut(s)	39, 104
HindIII	AAGCTT	1 cut(s)	288
Hpy188I	TCNGA	3 cut(s)	178, 247, 323
HpyCH4III	ACNGT	4 cut(s)	55, 73, 82, 90
HpyCH4IV	ACGT	1 cut(s)	347
HpyCH4V	TGCA	3 cut(s)	212, 224, 286
HpyF10VI	GCNNNNNNNGC	2 cut(s)	83, 221
HpySE526I	ACGT	1 cut(s)	347
Hsp92II	CATG	2 cut(s)	39, 104
LmnI	GCTCC	2 cut(s)	4, 145
Lsp1109I	GCAGC	1 cut(s)	224
MaeI	CTAG	1 cut(s)	363
MaeII	ACGT	1 cut(s)	347
MfeI	CAATTG	1 cut(s)	219
MluCI	AATT	4 cut(s)	14, 40, 219, 295
MnlI	CCTC	3 cut(s)	118, 124, 259
MseI	TTAA	2 cut(s)	294, 350
MslI	CAYNNNNRTG	1 cut(s)	231
MspA1I	CMGCKG	1 cut(s)	215
MunI	CAATTG	1 cut(s)	219
MwoI	GCNNNNNNNGC	2 cut(s)	83, 221
NdeI	CATATG	1 cut(s)	120
NlaIII	CATG	2 cut(s)	39, 104
PkrI	GCNGC	2 cut(s)	214, 217
RseI	CAYNNNNRTG	1 cut(s)	231
SaqAI	TTAA	2 cut(s)	294, 350
SatI	GCNGC	2 cut(s)	213, 216
SetI	ASST	6 cut(s)	9, 33, 150, 292, 343, 350
SgeI	CNNG	9 cut(s)	48, 99, 113, 179, 221, 299, 317, 368, 375
SmiMI	CAYNNNNRTG	1 cut(s)	231
Sse9I	AATT	4 cut(s)	14, 40, 219, 295
SsiI	CCGC	1 cut(s)	215
SspI	AATATT	1 cut(s)	239
SspMI	CTAG	1 cut(s)	363
TaaI	ACNGT	4 cut(s)	55, 73, 82, 90
TaiI	ACGT	1 cut(s)	350
TasI	AATT	4 cut(s)	14, 40, 219, 295
TauI	GCSGC	1 cut(s)	218
Tru1I	TTAA	2 cut(s)	294, 350
Tru9I	TTAA	2 cut(s)	294, 350
TseI	GCWGC	1 cut(s)	212
TspDTI	ATGAA	1 cut(s)	249
XspI	CTAG	1 cut(s)	363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.