Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001739

Physical Location & Seq

Genomic Coordinates Forward (+)

35949219 .. 35949617

Gene Structure 399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19516

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGTGCACTCTGCATAGATCTCTTGCAAACGTTGTTGACTCCTATTCTATGTGGATTTATGTTTTTCAAACAATTGCTAAACCCTTGTTGTTATTTCTTGCTGCTGGAATATCAGAAACCTTATCCCCGAGTTCTTGTGCATCTGCATTGCGTAAAATTTTTGAAGATGCCTCTGCAGTGATGTATGAACCTGCAAATTTGGAGATATTGATATGGATAGGAGAGGGTCTCGAGAACATTCATTTACCTTTGGAAGATGAGGAAGAAGTTGTTAGTGCAGTTAGTCTGATTTGTGGTTCTATTTATAACAAAGAATTAATGAGAAATTTATTGGCTAGATTGCTTTCTTCTAGCTTTGAAGCTATTGGGAAATTTGTTAATAACAGTCATTGCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0007154 GO:0007165 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0023052 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0033036 GO:0033218 GO:0033365 GO:0034504 GO:0034613 GO:0038023 GO:0042277 GO:0042802 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0050896 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0060089 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Xpo1

Protein Analysis

132

Amino Acids

14.61

Weight (kDa)

4.8

Isoelectric Point (pI)

51.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Publication-ready

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Orthologous Genes (Group: OG0001739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32440
fragaria_vesca	FvH4_5g21480 FvH4_5g21480 FvH4_5g21480
malus_domestica	MD06G1029300.v1.1
prunus_persica	Prupe.5G042500_v2.0.a1 Prupe.5G042500_v2.0.a1 Prupe.5G042500_v2.0.a1 Prupe.5G042500_v2.0.a1
pyrus_communis	pycom06g02360
rosa_chinensis	RchiOBHm_Chr1g0366171 RchiOBHm_Chr7g0208881 RchiOBHm_Chr7g0218031
rosa_laevigata	RLG00000001114 RLG00000003187 RLG00000013234
rosa_multiflora	Rmu_sc0000532.1_g000006 Rmu_sc0001141.1_g000017 Rmu_sc0001879.1_g000041 Rmu_sc0003387.1_g000004 Rmu_sc0003662.1_g000006 Rmu_sc0005320.1_g000008 Rmu_sc0016359.1_g000002
rosa_roxburghii	Rroxscaffold_2G00090500 Rroxscaffold_3G00241470 Rroxscaffold_3G00250080 Rroxscaffold_3G00262770
rosa_rugosa	Rorug07G0107000 Rorug07G0107100 Rorug07G0107200 Rorug07G0312100
rosa_samantha	Rh1CG098000 Rh1DG105400 Rh3BG280200 Rh3DG190500 Rh4AG144100 Rh4CG150800 Rh5BG196800 Rh7AG242100 Rh7BG008700 Rh7BG236900 Rh7CG257000 Rh7CG484900 Rh7DG248000 Rh7DG453300
rosa_wichuraiana	Rw7G020500 Rw7G038690 Rw7G041650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	306
Acc36I	ACCTGC	1 cut(s)	199
AclI	AACGTT	1 cut(s)	30
AcsI	RAATTY	4 cut(s)	156, 196, 325, 371
AgsI	TTSAA	3 cut(s)	68, 164, 359
AluBI	AGCT	2 cut(s)	354, 362
AluI	AGCT	2 cut(s)	354, 362
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	233
Alw44I	GTGCAC	1 cut(s)	4
Ama87I	CYCGRG	2 cut(s)	127, 230
ApaLI	GTGCAC	1 cut(s)	4
ApeKI	GCWGC	1 cut(s)	101
ApoI	RAATTY	4 cut(s)	156, 196, 325, 371
AseI	ATTAAT	1 cut(s)	317
AvaI	CYCGRG	2 cut(s)	127, 230
BaeGI	GKGCMC	1 cut(s)	8
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	1 cut(s)	88
BcoDI	GTCTC	1 cut(s)	233
BfaI	CTAG	2 cut(s)	336, 351
BfmI	CTRYAG	1 cut(s)	174
BfuAI	ACCTGC	1 cut(s)	199
BglII	AGATCT	1 cut(s)	17
BisI	GCNGC	1 cut(s)	102
BlsI	GCNGC	1 cut(s)	103
BmeT110I	CYCGRG	2 cut(s)	127, 230
BmsI	GCATC	2 cut(s)	149, 157
BplI	GAGNNNNNCTC	2 cut(s)	213, 245
BsaI	GGTCTC	1 cut(s)	233
Bse3DI	GCAATG	2 cut(s)	146, 388
BseMI	GCAATG	2 cut(s)	146, 388
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	1 cut(s)	88
BsgI	GTGCAG	1 cut(s)	297
BsiHKAI	GWGCWC	1 cut(s)	8
BsiHKCI	CYCGRG	2 cut(s)	127, 230
BsmAI	GTCTC	1 cut(s)	233
Bso31I	GGTCTC	1 cut(s)	233
BsoBI	CYCGRG	2 cut(s)	127, 230
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	1 cut(s)	17
BspMAI	CTGCAG	1 cut(s)	178
BspMI	ACCTGC	1 cut(s)	199
BspTNI	GGTCTC	1 cut(s)	233
BsrDI	GCAATG	2 cut(s)	146, 388
BssMI	GATC	1 cut(s)	17
Bst4CI	ACNGT	1 cut(s)	386
BstKTI	GATC	1 cut(s)	20
BstMAI	GTCTC	1 cut(s)	233
BstMBI	GATC	1 cut(s)	17
BstSFI	CTRYAG	1 cut(s)	174
BstSLI	GKGCMC	1 cut(s)	8
BstV1I	GCAGC	1 cut(s)	88
BstX2I	RGATCY	1 cut(s)	17
BstYI	RGATCY	1 cut(s)	17
BtsI	GCAGTG	1 cut(s)	183
BtsIMutI	CAGTG	1 cut(s)	183
BveI	ACCTGC	1 cut(s)	199
CviJI	RGCY	3 cut(s)	335, 354, 362
CviKI_1	RGCY	3 cut(s)	335, 354, 362
DpnI	GATC	1 cut(s)	19
DpnII	GATC	1 cut(s)	17
Eco31I	GGTCTC	1 cut(s)	233
Eco88I	CYCGRG	2 cut(s)	127, 230
FaiI	YATR	6 cut(s)	15, 50, 60, 186, 214, 306
Fnu4HI	GCNGC	1 cut(s)	102
Fsp4HI	GCNGC	1 cut(s)	102
FspBI	CTAG	2 cut(s)	336, 351
GluI	GCNGC	1 cut(s)	102
HincII	GTYRAC	1 cut(s)	37
HindII	GTYRAC	1 cut(s)	37
HinfI	GANTC	1 cut(s)	38
Hpy166II	GTNNAC	2 cut(s)	6, 37
Hpy188I	TCNGA	3 cut(s)	115, 288, 398
Hpy188III	TCNNGA	2 cut(s)	230, 232
Hpy8I	GTNNAC	2 cut(s)	6, 37
HpyCH4III	ACNGT	1 cut(s)	386
HpyCH4IV	ACGT	1 cut(s)	30
HpyCH4V	TGCA	8 cut(s)	6, 13, 26, 140, 146, 176, 194, 278
HpySE526I	ACGT	1 cut(s)	30
Kzo9I	GATC	1 cut(s)	17
LpnPI	CCDG	2 cut(s)	90, 204
Lsp1109I	GCAGC	1 cut(s)	88
LweI	GCATC	2 cut(s)	149, 157
MaeI	CTAG	2 cut(s)	336, 351
MaeII	ACGT	1 cut(s)	30
MalI	GATC	1 cut(s)	19
MboI	GATC	1 cut(s)	17
MboII	GAAGA	4 cut(s)	176, 266, 275, 339
MfeI	CAATTG	1 cut(s)	72
MflI	RGATCY	1 cut(s)	17
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	6 cut(s)	72, 156, 196, 314, 325, 371
MlyI	GAGTC	1 cut(s)	32
MnlI	CCTC	3 cut(s)	181, 217, 253
MseI	TTAA	2 cut(s)	317, 378
MunI	CAATTG	1 cut(s)	72
NdeII	GATC	1 cut(s)	17
PaeR7I	CTCGAG	1 cut(s)	230
PkrI	GCNGC	1 cut(s)	103
PleI	GAGTC	1 cut(s)	32
PpsI	GAGTC	1 cut(s)	32
PshBI	ATTAAT	1 cut(s)	317
PsiI	TTATAA	1 cut(s)	306
Psp1406I	AACGTT	1 cut(s)	30
PstI	CTGCAG	1 cut(s)	178
PsuI	RGATCY	1 cut(s)	17
SaqAI	TTAA	2 cut(s)	317, 378
SatI	GCNGC	1 cut(s)	102
Sau3AI	GATC	1 cut(s)	17
SchI	GAGTC	1 cut(s)	32
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	6 cut(s)	33, 122, 193, 250, 356, 364
SfaNI	GCATC	2 cut(s)	149, 157
SfcI	CTRYAG	1 cut(s)	174
Sfr274I	CTCGAG	1 cut(s)	230
SlaI	CTCGAG	1 cut(s)	230
SmlI	CTYRAG	1 cut(s)	230
SmoI	CTYRAG	1 cut(s)	230
Sse9I	AATT	6 cut(s)	72, 156, 196, 314, 325, 371
SspMI	CTAG	2 cut(s)	336, 351
TaaI	ACNGT	1 cut(s)	386
TaiI	ACGT	1 cut(s)	33
TaqI	TCGA	1 cut(s)	231
TasI	AATT	6 cut(s)	72, 156, 196, 314, 325, 371
Tru1I	TTAA	2 cut(s)	317, 378
Tru9I	TTAA	2 cut(s)	317, 378
TscAI	CASTG	1 cut(s)	183
TseI	GCWGC	1 cut(s)	101
TspDTI	ATGAA	2 cut(s)	201, 230
TspRI	CASTG	1 cut(s)	183
VneI	GTGCAC	1 cut(s)	4
VspI	ATTAAT	1 cut(s)	317
XapI	RAATTY	4 cut(s)	156, 196, 325, 371
XhoI	CTCGAG	1 cut(s)	230
XspI	CTAG	2 cut(s)	336, 351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.