Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003662.1

Orthogroup ID

OG0001739

Physical Location & Seq

Genomic Coordinates Reverse (-)

20554 .. 21270

Gene Structure 717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003662.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

atggatgattctatgttcaatggtgaccaaggaatacaggagccgcctcttggccttgtttattttaggatgaatcttgttgaactattggtggatatttttcagcttttaatatatgttatagttgtacagaagcttttctttggtgtttcggcctctgcaattgcaccaatagcttggaaggatgtggagatcaatttattttctcttaatgtggtcgcgaaggtaatcctacagaaaagccaaatctttgatttctcggttattatgcagttgatggtttggtctattaggcctttggatgaactgaagggtagtatgtgcactctacatagatctcttgcttacgttgttgactcctattctatgtggatctatgtttttcaaatcattgctaggcccttgttgttatttcttgctgctggaatatcagaaaccttatcctcgagttcttgtgcatctgcattgcgtaaaatttttgaagatgcctctgcagtgatgtatgaaccttcaaatttggagatattgatgtggataggagagggtctcgagaactttcatttacctttggaagataagaaagaagttgttagtgcagttagtctgatctgtggttctatttataacaaagagttaatgaggaacttattagctagattgctttcttctagctttgaagctattgggaaatctgttgataacagtcattgcctctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0007154 GO:0007165 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0023052 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0033036 GO:0033218 GO:0033365 GO:0034504 GO:0034613 GO:0038023 GO:0042277 GO:0042802 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0050896 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0060089 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Xpo1

Protein Analysis

238

Amino Acids

26.7

Weight (kDa)

4.88

Isoelectric Point (pI)

31.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32440
fragaria_vesca	FvH4_5g21480 FvH4_5g21480 FvH4_5g21480
malus_domestica	MD06G1029300.v1.1
prunus_persica	Prupe.5G042500_v2.0.a1 Prupe.5G042500_v2.0.a1 Prupe.5G042500_v2.0.a1 Prupe.5G042500_v2.0.a1
pyrus_communis	pycom06g02360
rosa_chinensis	RchiOBHm_Chr1g0366171 RchiOBHm_Chr7g0208881 RchiOBHm_Chr7g0218031
rosa_laevigata	RLG00000001114 RLG00000003187 RLG00000013234
rosa_multiflora	Rmu_sc0000532.1_g000006 Rmu_sc0001141.1_g000017 Rmu_sc0001879.1_g000041 Rmu_sc0003387.1_g000004 Rmu_sc0003662.1_g000006 Rmu_sc0005320.1_g000008 Rmu_sc0016359.1_g000002
rosa_roxburghii	Rroxscaffold_2G00090500 Rroxscaffold_3G00241470 Rroxscaffold_3G00250080 Rroxscaffold_3G00262770
rosa_rugosa	Rorug07G0107000 Rorug07G0107100 Rorug07G0107200 Rorug07G0312100
rosa_samantha	Rh1CG098000 Rh1DG105400 Rh3BG280200 Rh3DG190500 Rh4AG144100 Rh4CG150800 Rh5BG196800 Rh7AG242100 Rh7BG008700 Rh7BG236900 Rh7CG257000 Rh7CG484900 Rh7DG248000 Rh7DG453300
rosa_wichuraiana	Rw7G020500 Rw7G038690 Rw7G041650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	624
AccII	CGCG	1 cut(s)	221
AciI	CCGC	1 cut(s)	44
AclWI	GGATC	1 cut(s)	380
AcsI	RAATTY	2 cut(s)	474, 514
AcuI	CTGAAG	1 cut(s)	329
AfaI	GTAC	1 cut(s)	129
AfiI	CCNNNNNNNGG	1 cut(s)	50
AgsI	TTSAA	6 cut(s)	19, 83, 386, 482, 513, 677
AluBI	AGCT	6 cut(s)	106, 136, 176, 653, 672, 680
AluI	AGCT	6 cut(s)	106, 136, 176, 653, 672, 680
Alw21I	GWGCWC	1 cut(s)	326
Alw26I	GTCTC	1 cut(s)	551
Alw44I	GTGCAC	1 cut(s)	322
AlwI	GGATC	1 cut(s)	380
Ama87I	CYCGRG	2 cut(s)	445, 548
AoxI	GGCC	4 cut(s)	52, 153, 293, 398
ApaLI	GTGCAC	1 cut(s)	322
ApeKI	GCWGC	1 cut(s)	419
ApoI	RAATTY	2 cut(s)	474, 514
Asp700I	GAANNNNTTC	1 cut(s)	137
AspS9I	GGNCC	1 cut(s)	399
AsuHPI	GGTGA	1 cut(s)	35
AvaI	CYCGRG	2 cut(s)	445, 548
BaeGI	GKGCMC	1 cut(s)	326
Bbv12I	GWGCWC	1 cut(s)	326
BbvI	GCAGC	1 cut(s)	406
BccI	CCATC	1 cut(s)	271
BcoDI	GTCTC	1 cut(s)	551
BfaI	CTAG	3 cut(s)	396, 654, 669
BfmI	CTRYAG	2 cut(s)	233, 492
BglII	AGATCT	1 cut(s)	335
BisI	GCNGC	2 cut(s)	44, 420
BlsI	GCNGC	2 cut(s)	45, 421
BmeT110I	CYCGRG	2 cut(s)	445, 548
BmgT120I	GGNCC	1 cut(s)	399
BmiI	GGNNCC	1 cut(s)	42
BmsI	GCATC	2 cut(s)	467, 475
BplI	GAGNNNNNCTC	2 cut(s)	531, 563
BsaI	GGTCTC	1 cut(s)	551
BsaJI	CCNNGG	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	1 cut(s)	50
Bse3DI	GCAATG	3 cut(s)	390, 464, 706
BseDI	CCNNGG	1 cut(s)	28
BseGI	GGATG	4 cut(s)	10, 75, 190, 307
BseLI	CCNNNNNNNGG	1 cut(s)	50
BseMI	GCAATG	3 cut(s)	390, 464, 706
BseSI	GKGCMC	1 cut(s)	326
BseXI	GCAGC	1 cut(s)	406
BsgI	GTGCAG	1 cut(s)	615
Bsh1236I	CGCG	1 cut(s)	221
BshFI	GGCC	4 cut(s)	54, 155, 295, 400
BsiHKAI	GWGCWC	1 cut(s)	326
BsiHKCI	CYCGRG	2 cut(s)	445, 548
BslI	CCNNNNNNNGG	1 cut(s)	50
BsmAI	GTCTC	1 cut(s)	551
BsnI	GGCC	4 cut(s)	54, 155, 295, 400
Bso31I	GGTCTC	1 cut(s)	551
BsoBI	CYCGRG	2 cut(s)	445, 548
Bsp1286I	GDGCHC	1 cut(s)	326
Bsp1407I	TGTACA	1 cut(s)	127
Bsp143I	GATC	4 cut(s)	192, 335, 372, 606
Bsp68I	TCGCGA	1 cut(s)	221
BspACI	CCGC	1 cut(s)	44
BspANI	GGCC	4 cut(s)	54, 155, 295, 400
BspFNI	CGCG	1 cut(s)	221
BspLI	GGNNCC	1 cut(s)	42
BspMAI	CTGCAG	1 cut(s)	496
BspPI	GGATC	1 cut(s)	380
BspTNI	GGTCTC	1 cut(s)	551
BsrDI	GCAATG	3 cut(s)	390, 464, 706
BsrGI	TGTACA	1 cut(s)	127
BssECI	CCNNGG	1 cut(s)	28
BssMI	GATC	4 cut(s)	192, 335, 372, 606
BssT1I	CCWWGG	1 cut(s)	28
Bst4CI	ACNGT	1 cut(s)	704
BstAUI	TGTACA	1 cut(s)	127
BstEII	GGTNACC	1 cut(s)	23
BstF5I	GGATG	4 cut(s)	10, 75, 190, 307
BstFNI	CGCG	1 cut(s)	221
BstKTI	GATC	4 cut(s)	195, 338, 375, 609
BstMAI	GTCTC	1 cut(s)	551
BstMBI	GATC	4 cut(s)	192, 335, 372, 606
BstMWI	GCNNNNNNNGC	1 cut(s)	173
BstPI	GGTNACC	1 cut(s)	23
BstSFI	CTRYAG	2 cut(s)	233, 492
BstSLI	GKGCMC	1 cut(s)	326
BstUI	CGCG	1 cut(s)	221
BstV1I	GCAGC	1 cut(s)	406
BstX2I	RGATCY	2 cut(s)	335, 372
BstXI	CCANNNNNNTGG	1 cut(s)	177
BstYI	RGATCY	2 cut(s)	335, 372
BsuRI	GGCC	4 cut(s)	54, 155, 295, 400
BtsCI	GGATG	4 cut(s)	10, 75, 190, 307
BtsI	GCAGTG	1 cut(s)	501
BtsIMutI	CAGTG	1 cut(s)	501
BtuMI	TCGCGA	1 cut(s)	221
Cfr13I	GGNCC	1 cut(s)	399
Csp6I	GTAC	1 cut(s)	128
CviQI	GTAC	1 cut(s)	128
DpnI	GATC	4 cut(s)	194, 337, 374, 608
DpnII	GATC	4 cut(s)	192, 335, 372, 606
Eco130I	CCWWGG	1 cut(s)	28
Eco147I	AGGCCT	1 cut(s)	295
Eco31I	GGTCTC	1 cut(s)	551
Eco57I	CTGAAG	1 cut(s)	329
Eco88I	CYCGRG	2 cut(s)	445, 548
Eco91I	GGTNACC	1 cut(s)	23
EcoO109I	RGGNCCY	1 cut(s)	399
EcoO65I	GGTNACC	1 cut(s)	23
EcoT14I	CCWWGG	1 cut(s)	28
ErhI	CCWWGG	1 cut(s)	28
FalI	AAGNNNNNCTT	2 cut(s)	125, 157
Fnu4HI	GCNGC	2 cut(s)	44, 420
FokI	GGATG	4 cut(s)	17, 82, 197, 314
Fsp4HI	GCNGC	2 cut(s)	44, 420
FspBI	CTAG	3 cut(s)	396, 654, 669
GluI	GCNGC	2 cut(s)	44, 420
HaeIII	GGCC	4 cut(s)	54, 155, 295, 400
HincII	GTYRAC	1 cut(s)	355
HindII	GTYRAC	1 cut(s)	355
HindIII	AAGCTT	1 cut(s)	134
HinfI	GANTC	3 cut(s)	8, 73, 356
HphI	GGTGA	1 cut(s)	35
Hpy166II	GTNNAC	2 cut(s)	324, 355
Hpy188I	TCNGA	3 cut(s)	433, 606, 716
Hpy188III	TCNNGA	3 cut(s)	220, 548, 550
Hpy8I	GTNNAC	2 cut(s)	324, 355
HpyAV	CCTTC	4 cut(s)	175, 217, 304, 519
HpyCH4III	ACNGT	1 cut(s)	704
HpyCH4IV	ACGT	1 cut(s)	348
HpyCH4V	TGCA	8 cut(s)	161, 167, 271, 324, 458, 464, 494, 596
HpyF10VI	GCNNNNNNNGC	1 cut(s)	173
HpySE526I	ACGT	1 cut(s)	348
Kzo9I	GATC	4 cut(s)	192, 335, 372, 606
LmnI	GCTCC	1 cut(s)	40
LpnPI	CCDG	2 cut(s)	23, 408
Lsp1109I	GCAGC	1 cut(s)	406
LweI	GCATC	2 cut(s)	467, 475
MaeI	CTAG	3 cut(s)	396, 654, 669
MaeII	ACGT	1 cut(s)	348
MaeIII	GTNAC	1 cut(s)	23
MalI	GATC	4 cut(s)	194, 337, 374, 608
MboI	GATC	4 cut(s)	192, 335, 372, 606
MboII	GAAGA	3 cut(s)	494, 584, 657
MfeI	CAATTG	1 cut(s)	162
MflI	RGATCY	2 cut(s)	335, 372
MhlI	GDGCHC	1 cut(s)	326
MluCI	AATT	4 cut(s)	162, 196, 474, 514
MlyI	GAGTC	1 cut(s)	350
MnlI	CCTC	6 cut(s)	57, 166, 454, 499, 535, 633
MroXI	GAANNNNTTC	1 cut(s)	137
MseI	TTAA	3 cut(s)	110, 210, 635
MunI	CAATTG	1 cut(s)	162
MvnI	CGCG	1 cut(s)	221
MwoI	GCNNNNNNNGC	1 cut(s)	173
NdeII	GATC	4 cut(s)	192, 335, 372, 606
NlaIV	GGNNCC	1 cut(s)	42
NmuCI	GTSAC	1 cut(s)	23
NruI	TCGCGA	1 cut(s)	221
PaeR7I	CTCGAG	2 cut(s)	445, 548
PceI	AGGCCT	1 cut(s)	295
PdmI	GAANNNNTTC	1 cut(s)	137
PfeI	GAWTC	2 cut(s)	8, 73
PkrI	GCNGC	2 cut(s)	45, 421
PleI	GAGTC	1 cut(s)	350
PpsI	GAGTC	1 cut(s)	350
PsiI	TTATAA	1 cut(s)	624
PspEI	GGTNACC	1 cut(s)	23
PspN4I	GGNNCC	1 cut(s)	42
PspPI	GGNCC	1 cut(s)	399
PspXI	VCTCGAGB	1 cut(s)	445
PstI	CTGCAG	1 cut(s)	496
PsuI	RGATCY	2 cut(s)	335, 372
RruI	TCGCGA	1 cut(s)	221
RsaI	GTAC	1 cut(s)	129
RsaNI	GTAC	1 cut(s)	128
SaqAI	TTAA	3 cut(s)	110, 210, 635
SatI	GCNGC	2 cut(s)	44, 420
Sau3AI	GATC	4 cut(s)	192, 335, 372, 606
Sau96I	GGNCC	1 cut(s)	399
SchI	GAGTC	1 cut(s)	350
SduI	GDGCHC	1 cut(s)	326
SfaNI	GCATC	2 cut(s)	467, 475
SfcI	CTRYAG	2 cut(s)	233, 492
Sfr274I	CTCGAG	2 cut(s)	445, 548
SlaI	CTCGAG	2 cut(s)	445, 548
SmlI	CTYRAG	2 cut(s)	445, 548
SmoI	CTYRAG	2 cut(s)	445, 548
Sse9I	AATT	4 cut(s)	162, 196, 474, 514
SseBI	AGGCCT	1 cut(s)	295
SsiI	CCGC	1 cut(s)	44
SspMI	CTAG	3 cut(s)	396, 654, 669
StuI	AGGCCT	1 cut(s)	295
StyI	CCWWGG	1 cut(s)	28
TaaI	ACNGT	1 cut(s)	704
TaiI	ACGT	1 cut(s)	351
TaqI	TCGA	2 cut(s)	446, 549
TasI	AATT	4 cut(s)	162, 196, 474, 514
TatI	WGTACW	1 cut(s)	127
TauI	GCSGC	1 cut(s)	46
TfiI	GAWTC	2 cut(s)	8, 73
Tru1I	TTAA	3 cut(s)	110, 210, 635
Tru9I	TTAA	3 cut(s)	110, 210, 635
TscAI	CASTG	1 cut(s)	501
TseFI	GTSAC	1 cut(s)	23
TseI	GCWGC	1 cut(s)	419
Tsp45I	GTSAC	1 cut(s)	23
TspDTI	ATGAA	4 cut(s)	86, 318, 519, 548
TspRI	CASTG	1 cut(s)	501
VneI	GTGCAC	1 cut(s)	322
XapI	RAATTY	2 cut(s)	474, 514
XhoI	CTCGAG	2 cut(s)	445, 548
XmnI	GAANNNNTTC	1 cut(s)	137
XspI	CTAG	3 cut(s)	396, 654, 669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.