Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001739

Physical Location & Seq

Genomic Coordinates Reverse (-)

56838083 .. 56838820

Gene Structure 738 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ59074

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGTATGGGCAGAATGCTATTATAATTAATGAGTTATTTGGCAAGACAACTCTAATGGAACTCTTCAATGTAATTGGTTCTATGTATGCTACGCTTCTCTTTCTCGGTATTAAGAATTCGACAACAGTTCAGTCCGTAGTGTCTATCGAACGAACAGTCTTTTATAGAGAACGGGCTGCTAGAATATCAGAACCCCTGTCCTTGAGTTCTTGTGCATCTGCATTGCGTAAAGTTTGTGAAGATGTTTCTGCAGTGATATATAAATCTTTAAATTTGGAGATATTGAGCTGGATAGCAGAGGGTCTGGAGAGCGATCACTTCCTTTTGGCAAATGAGGAAGATATTGTTTGTGCAGTTAATCTGATCTTTGGTTCTATTAATACCAAAGAATTACAGAACAACTTATTGGCTATATTGCTTTCTTCTAGCTTTGAAGCCATTGGGGAATTTGCTGATAAAGATAGTAGCCATTGCCTGAGAAAAAATTATGCTACCTATACCAAAGTGATCAATGATGAACTTGCTAAACATTTTTCTCATACTAAGTCTGCATCAACTCCTTTGAGGTATTGTTCTTCTTCAGCTACCTCAATCGTTACTACTTTTCTTCTTTCTGTGGCAGTAGTCATGTGTGTTACTACTTGTGGTGTGATGAAGACTATAGCAAAAGTACACATTGATGAATTTGCTGCGAAAGCTATGTTGCTGCCACATGGAATTTCTGATGTGGGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0007154 GO:0007165 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0023052 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0033036 GO:0033218 GO:0033365 GO:0034504 GO:0034613 GO:0038023 GO:0042277 GO:0042802 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0050896 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0060089 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Xpo1

Protein Analysis

245

Amino Acids

26.82

Weight (kDa)

6.08

Isoelectric Point (pI)

31.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32440
fragaria_vesca	FvH4_5g21480 FvH4_5g21480 FvH4_5g21480
malus_domestica	MD06G1029300.v1.1
prunus_persica	Prupe.5G042500_v2.0.a1 Prupe.5G042500_v2.0.a1 Prupe.5G042500_v2.0.a1 Prupe.5G042500_v2.0.a1
pyrus_communis	pycom06g02360
rosa_chinensis	RchiOBHm_Chr1g0366171 RchiOBHm_Chr7g0208881 RchiOBHm_Chr7g0218031
rosa_laevigata	RLG00000001114 RLG00000003187 RLG00000013234
rosa_multiflora	Rmu_sc0000532.1_g000006 Rmu_sc0001141.1_g000017 Rmu_sc0001879.1_g000041 Rmu_sc0003387.1_g000004 Rmu_sc0003662.1_g000006 Rmu_sc0005320.1_g000008 Rmu_sc0016359.1_g000002
rosa_roxburghii	Rroxscaffold_2G00090500 Rroxscaffold_3G00241470 Rroxscaffold_3G00250080 Rroxscaffold_3G00262770
rosa_rugosa	Rorug07G0107000 Rorug07G0107100 Rorug07G0107200 Rorug07G0312100
rosa_samantha	Rh1CG098000 Rh1DG105400 Rh3BG280200 Rh3DG190500 Rh4AG144100 Rh4CG150800 Rh5BG196800 Rh7AG242100 Rh7BG008700 Rh7BG236900 Rh7CG257000 Rh7CG484900 Rh7DG248000 Rh7DG453300
rosa_wichuraiana	Rw7G020500 Rw7G038690 Rw7G041650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	23
AcsI	RAATTY	5 cut(s)	115, 271, 446, 683, 717
AcuI	CTGAAG	1 cut(s)	564
AfaI	GTAC	1 cut(s)	672
AgsI	TTSAA	2 cut(s)	67, 434
AjuI	GAANNNNNNNTTGG	2 cut(s)	389, 421
AluBI	AGCT	4 cut(s)	288, 429, 584, 698
AluI	AGCT	4 cut(s)	288, 429, 584, 698
ApeKI	GCWGC	3 cut(s)	176, 689, 706
ApoI	RAATTY	5 cut(s)	115, 271, 446, 683, 717
ArsI	GACNNNNNNTTYG	2 cut(s)	141, 173
AseI	ATTAAT	2 cut(s)	27, 378
BbsI	GAAGAC	1 cut(s)	662
BbvI	GCAGC	3 cut(s)	163, 676, 693
BclI	TGATCA	1 cut(s)	507
BfaI	CTAG	2 cut(s)	180, 426
BfmI	CTRYAG	2 cut(s)	249, 660
BisI	GCNGC	3 cut(s)	177, 690, 707
BlsI	GCNGC	3 cut(s)	178, 691, 708
BmsI	GCATC	2 cut(s)	224, 560
BpiI	GAAGAC	1 cut(s)	662
BpmI	CTGGAG	1 cut(s)	326
BpuEI	CTTGAG	1 cut(s)	223
Bse3DI	GCAATG	2 cut(s)	221, 469
BseMI	GCAATG	2 cut(s)	221, 469
BseMII	CTCAG	1 cut(s)	467
BseXI	GCAGC	3 cut(s)	163, 676, 693
BsgI	GTGCAG	1 cut(s)	372
BsmI	GAATGC	1 cut(s)	19
Bsp143I	GATC	3 cut(s)	313, 363, 507
BspCNI	CTCAG	1 cut(s)	468
BspMAI	CTGCAG	1 cut(s)	253
BsrDI	GCAATG	2 cut(s)	221, 469
BssMI	GATC	3 cut(s)	313, 363, 507
Bst4CI	ACNGT	2 cut(s)	127, 157
Bst6I	CTCTTC	1 cut(s)	68
BstDEI	CTNAG	2 cut(s)	476, 543
BstKTI	GATC	3 cut(s)	316, 366, 510
BstMBI	GATC	3 cut(s)	313, 363, 507
BstMWI	GCNNNNNNNGC	1 cut(s)	695
BstSFI	CTRYAG	2 cut(s)	249, 660
BstV1I	GCAGC	3 cut(s)	163, 676, 693
BstV2I	GAAGAC	1 cut(s)	662
BtsI	GCAGTG	1 cut(s)	258
BtsIMutI	CAGTG	1 cut(s)	258
Csp6I	GTAC	1 cut(s)	671
CviAII	CATG	2 cut(s)	628, 713
CviJI	RGCY	8 cut(s)	176, 288, 410, 429, 437, 468, 584, 698
CviKI_1	RGCY	8 cut(s)	176, 288, 410, 429, 437, 468, 584, 698
CviQI	GTAC	1 cut(s)	671
DdeI	CTNAG	2 cut(s)	476, 543
DpnI	GATC	3 cut(s)	315, 365, 509
DpnII	GATC	3 cut(s)	313, 363, 507
DraI	TTTAAA	1 cut(s)	270
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
Eco57I	CTGAAG	1 cut(s)	564
EcoRI	GAATTC	1 cut(s)	115
FaeI	CATG	2 cut(s)	631, 716
FatI	CATG	2 cut(s)	627, 712
FbaI	TGATCA	1 cut(s)	507
Fnu4HI	GCNGC	3 cut(s)	177, 690, 707
Fsp4HI	GCNGC	3 cut(s)	177, 690, 707
FspBI	CTAG	2 cut(s)	180, 426
GluI	GCNGC	3 cut(s)	177, 690, 707
GsuI	CTGGAG	1 cut(s)	326
Hin1II	CATG	2 cut(s)	631, 716
Hpy166II	GTNNAC	1 cut(s)	673
Hpy188I	TCNGA	3 cut(s)	190, 363, 724
Hpy188III	TCNNGA	1 cut(s)	305
Hpy8I	GTNNAC	1 cut(s)	673
HpyCH4III	ACNGT	2 cut(s)	127, 157
HpyCH4V	TGCA	5 cut(s)	215, 221, 251, 353, 551
HpyF10VI	GCNNNNNNNGC	1 cut(s)	695
HpyF3I	CTNAG	2 cut(s)	476, 543
Hsp92II	CATG	2 cut(s)	631, 716
Ksp22I	TGATCA	1 cut(s)	507
Kzo9I	GATC	3 cut(s)	313, 363, 507
LpnPI	CCDG	4 cut(s)	209, 274, 290, 488
Lsp1109I	GCAGC	3 cut(s)	163, 676, 693
LweI	GCATC	2 cut(s)	224, 560
MaeI	CTAG	2 cut(s)	180, 426
MaeIII	GTNAC	2 cut(s)	595, 634
MalI	GATC	3 cut(s)	315, 365, 509
MboI	GATC	3 cut(s)	313, 363, 507
MboII	GAAGA	8 cut(s)	55, 251, 350, 414, 567, 570, 599, 667
MluCI	AATT	9 cut(s)	24, 72, 115, 271, 389, 446, 484, 683, 717
MnlI	CCTC	4 cut(s)	292, 328, 558, 598
MseI	TTAA	5 cut(s)	27, 111, 269, 357, 378
MslI	CAYNNNNRTG	1 cut(s)	678
Mva1269I	GAATGC	1 cut(s)	19
MwoI	GCNNNNNNNGC	1 cut(s)	695
NdeII	GATC	3 cut(s)	313, 363, 507
NlaIII	CATG	2 cut(s)	631, 716
PctI	GAATGC	1 cut(s)	19
PkrI	GCNGC	3 cut(s)	178, 691, 708
PshBI	ATTAAT	2 cut(s)	27, 378
PsiI	TTATAA	1 cut(s)	23
PstI	CTGCAG	1 cut(s)	253
RsaI	GTAC	1 cut(s)	672
RsaNI	GTAC	1 cut(s)	671
RseI	CAYNNNNRTG	1 cut(s)	678
SaqAI	TTAA	5 cut(s)	27, 111, 269, 357, 378
SatI	GCNGC	3 cut(s)	177, 690, 707
Sau3AI	GATC	3 cut(s)	313, 363, 507
SetI	ASST	7 cut(s)	290, 431, 497, 569, 586, 590, 700
SfaNI	GCATC	2 cut(s)	224, 560
SfcI	CTRYAG	2 cut(s)	249, 660
SmiMI	CAYNNNNRTG	1 cut(s)	678
SmlI	CTYRAG	1 cut(s)	202
SmoI	CTYRAG	1 cut(s)	202
Sse9I	AATT	9 cut(s)	24, 72, 115, 271, 389, 446, 484, 683, 717
SspMI	CTAG	2 cut(s)	180, 426
TaaI	ACNGT	2 cut(s)	127, 157
TaqI	TCGA	2 cut(s)	119, 147
TasI	AATT	9 cut(s)	24, 72, 115, 271, 389, 446, 484, 683, 717
TatI	WGTACW	1 cut(s)	670
Tru1I	TTAA	5 cut(s)	27, 111, 269, 357, 378
Tru9I	TTAA	5 cut(s)	27, 111, 269, 357, 378
TscAI	CASTG	1 cut(s)	258
TseI	GCWGC	3 cut(s)	176, 689, 706
TspDTI	ATGAA	3 cut(s)	531, 668, 696
TspGWI	ACGGA	1 cut(s)	124
TspRI	CASTG	1 cut(s)	258
VspI	ATTAAT	2 cut(s)	27, 378
XapI	RAATTY	5 cut(s)	115, 271, 446, 683, 717
XspI	CTAG	2 cut(s)	180, 426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.