Rmu_sc0005320.1_g000008

Belongs to the pyruvate kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005320.1
OG0001739
Physical Location & Seq
Forward (+)
25728 .. 26368
641 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005320.1_g000008.1.cds

Sequence Viewer

Length: 240 bp
atgacttggataacacgggctttattgagcaccaagaggtatttcgtgttcagagggatcacccagcagagcagtgaaggcaatcctagctcacccaatggtcctatgggtggtgttggggtgaactcgacttatgaaattcagtctgatgatgattacgaagtgggtcagggaagggcatttgcaagtggtcgaagaaaaactaagattgtctgtacaattggtccttccacaagctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000287 GO:0003006 GO:0003674 GO:0003824 GO:0004743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006082 GO:0006090 GO:0006091 GO:0006096 GO:0006139 GO:0006163 GO:0006164 GO:0006165 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006754 GO:0006757 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009132 GO:0009135 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009166 GO:0009167 GO:0009168 GO:0009179 GO:0009185 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009791 GO:0009987 GO:0010154 GO:0010431 GO:0016052 GO:0016053 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0018130 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019439 GO:0019637 GO:0019693 GO:0019752 GO:0021700 GO:0022414 GO:0030955 GO:0031420 GO:0032501 GO:0032502 GO:0032504 GO:0032787 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0042866 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046031 GO:0046034 GO:0046390 GO:0046394 GO:0046434 GO:0046483 GO:0046496 GO:0046700 GO:0046872 GO:0046939 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0051186 GO:0051188 GO:0055086 GO:0061458 GO:0071695 GO:0071704 GO:0072330 GO:0072521 GO:0072522 GO:0072524 GO:0072525 GO:0090407 GO:1901135 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576
KEGG Pathways
Metabolic & Signaling
ko00010 ko00230 ko00620 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04922 ko04930 ko05165 ko05203 ko05230 map00010 map00230 map00620 map01100 map01110 map01120 map01130 map01200 map01230 map04922 map04930 map05165 map05203 map05230
Pfam Domains
Protein Families
PK PK_C

Protein Analysis

79

Amino Acids

8.55

Weight (kDa)

9.43

Isoelectric Point (pI)

43.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Tree File
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 65
AcsI RAATTY 1 cut(s) 138
AfaI GTAC 1 cut(s) 217
AfiI CCNNNNNNNGG 1 cut(s) 110
AjuI GAANNNNNNNTTGG 2 cut(s) 26, 58
AluBI AGCT 2 cut(s) 90, 237
AluI AGCT 2 cut(s) 90, 237
Alw21I GWGCWC 1 cut(s) 32
AlwI GGATC 1 cut(s) 65
ApoI RAATTY 1 cut(s) 138
AspS9I GGNCC 2 cut(s) 101, 224
AsuHPI GGTGA 3 cut(s) 52, 84, 133
AvaII GGWCC 2 cut(s) 101, 224
Bbv12I GWGCWC 1 cut(s) 32
BfaI CTAG 1 cut(s) 87
Bme18I GGWCC 2 cut(s) 101, 224
BmgT120I GGNCC 2 cut(s) 101, 224
Bsc4I CCNNNNNNNGG 1 cut(s) 110
BseLI CCNNNNNNNGG 1 cut(s) 110
BseYI CCCAGC 1 cut(s) 63
BsiHKAI GWGCWC 1 cut(s) 32
BslI CCNNNNNNNGG 1 cut(s) 110
Bsp1286I GDGCHC 1 cut(s) 32
Bsp1407I TGTACA 1 cut(s) 215
Bsp143I GATC 1 cut(s) 57
BspPI GGATC 1 cut(s) 65
BsrGI TGTACA 1 cut(s) 215
BssMI GATC 1 cut(s) 57
BstAUI TGTACA 1 cut(s) 215
BstDEI CTNAG 1 cut(s) 204
BstKTI GATC 1 cut(s) 60
BstMBI GATC 1 cut(s) 57
BstMWI GCNNNNNNNGC 2 cut(s) 78, 87
BtsI GCAGTG 1 cut(s) 79
BtsIMutI CAGTG 1 cut(s) 79
Cfr13I GGNCC 2 cut(s) 101, 224
Csp6I GTAC 1 cut(s) 216
CviJI RGCY 3 cut(s) 20, 90, 237
CviKI_1 RGCY 3 cut(s) 20, 90, 237
CviQI GTAC 1 cut(s) 216
DdeI CTNAG 1 cut(s) 204
DpnI GATC 1 cut(s) 59
DpnII GATC 1 cut(s) 57
Eco47I GGWCC 2 cut(s) 101, 224
FaiI YATR 2 cut(s) 107, 135
FspBI CTAG 1 cut(s) 87
GsaI CCCAGC 1 cut(s) 67
HphI GGTGA 3 cut(s) 52, 84, 133
Hpy166II GTNNAC 1 cut(s) 124
Hpy188I TCNGA 2 cut(s) 53, 148
Hpy8I GTNNAC 1 cut(s) 124
HpyAV CCTTC 3 cut(s) 71, 168, 237
HpyCH4V TGCA 1 cut(s) 185
HpyF10VI GCNNNNNNNGC 2 cut(s) 78, 87
HpyF3I CTNAG 1 cut(s) 204
Kzo9I GATC 1 cut(s) 57
LpnPI CCDG 2 cut(s) 77, 155
MaeI CTAG 1 cut(s) 87
MalI GATC 1 cut(s) 59
MboI GATC 1 cut(s) 57
MboII GAAGA 1 cut(s) 207
MfeI CAATTG 1 cut(s) 219
MhlI GDGCHC 1 cut(s) 32
MluCI AATT 2 cut(s) 138, 219
MnlI CCTC 2 cut(s) 30, 47
MunI CAATTG 1 cut(s) 219
MwoI GCNNNNNNNGC 2 cut(s) 78, 87
NdeII GATC 1 cut(s) 57
PspFI CCCAGC 1 cut(s) 63
PspPI GGNCC 2 cut(s) 101, 224
PsrI GAACNNNNNNTAC 2 cut(s) 32, 64
RsaI GTAC 1 cut(s) 217
RsaNI GTAC 1 cut(s) 216
Sau3AI GATC 1 cut(s) 57
Sau96I GGNCC 2 cut(s) 101, 224
SduI GDGCHC 1 cut(s) 32
SetI ASST 3 cut(s) 41, 92, 239
SinI GGWCC 2 cut(s) 101, 224
Sse9I AATT 2 cut(s) 138, 219
SspMI CTAG 1 cut(s) 87
TaqI TCGA 2 cut(s) 128, 193
TasI AATT 2 cut(s) 138, 219
TatI WGTACW 1 cut(s) 215
TscAI CASTG 1 cut(s) 79
TspDTI ATGAA 1 cut(s) 150
TspRI CASTG 1 cut(s) 79
VpaK11BI GGWCC 2 cut(s) 101, 224
XapI RAATTY 1 cut(s) 138
XcmI CCANNNNNNNNNTGG 1 cut(s) 103
XspI CTAG 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.