Rh1CG098000

ATP-dependent RNA helicase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0001739
Physical Location & Seq
Reverse (-)
20790135 .. 20791800
1666 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG098000.1

Sequence Viewer

Length: 387 bp
ATGAGGATGGTTGCTGGGGTTACTCATCCAAAGGAAGTTTTACCTCCTGATCTTGGGGCATCTATTTATGCTATAGCCTGCGTTCTATCTTATGATGGTTTATCTGGGATTCCATTGCCAAAGCCTATGGATTTGCCGAATTCAGATTTAGAAGAACTTGAGATCGGTAAAGATGGAAAGGCACAGTTTAAAGTGACAGGAAATAATGCAGCAAAATCAAAGGAGCCATTACGTCAGAGAGTTTGTCAGAGGTCTCTATCGCGAGCTACTGATTTACCTGCCTTAAATGGATTTGCAAAGTTGTGTGACGACCCATCAATTCAGAGTGTTCCCCCATCGGCTTTCGCGAACACTACTGATTTACCTGCCTTCATAACGCCTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0006139 GO:0006259 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007276 GO:0007281 GO:0007283 GO:0007286 GO:0007292 GO:0007346 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0009994 GO:0010033 GO:0010467 GO:0012505 GO:0016043 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019899 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0032392 GO:0032501 GO:0032502 GO:0032504 GO:0032508 GO:0032991 GO:0034097 GO:0034458 GO:0034612 GO:0034641 GO:0035770 GO:0035821 GO:0042221 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043900 GO:0043902 GO:0043903 GO:0044237 GO:0044238 GO:0044260 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0044788 GO:0044794 GO:0044827 GO:0044829 GO:0045069 GO:0045070 GO:0045786 GO:0045787 GO:0045930 GO:0046483 GO:0048232 GO:0048468 GO:0048477 GO:0048515 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048524 GO:0048599 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050792 GO:0050794 GO:0050896 GO:0051276 GO:0051445 GO:0051446 GO:0051702 GO:0051704 GO:0051726 GO:0051728 GO:0051729 GO:0051817 GO:0051851 GO:0060184 GO:0065007 GO:0070035 GO:0070063 GO:0070555 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:0140098 GO:1901360 GO:1901363 GO:1903900 GO:1903902 GO:1990247 GO:1990904 GO:2000241 GO:2000243
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
DEAD HA2 Helicase_C OB_NTP_bind R3H

Protein Analysis

128

Amino Acids

13.65

Weight (kDa)

5.38

Isoelectric Point (pI)

40.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 286, 373
AccII CGCG 2 cut(s) 262, 347
AcsI RAATTY 1 cut(s) 139
AfiI CCNNNNNNNGG 1 cut(s) 53
AluBI AGCT 1 cut(s) 266
AluI AGCT 1 cut(s) 266
Alw26I GTCTC 1 cut(s) 258
ApeKI GCWGC 1 cut(s) 209
ApoI RAATTY 1 cut(s) 139
BbvI GCAGC 1 cut(s) 221
BccI CCATC 4 cut(s) 89, 167, 322, 343
BcoDI GTCTC 1 cut(s) 258
BfmI CTRYAG 1 cut(s) 72
BfuAI ACCTGC 2 cut(s) 286, 373
BisI GCNGC 1 cut(s) 210
BlsI GCNGC 1 cut(s) 211
BmiI GGNNCC 1 cut(s) 225
BmsI GCATC 1 cut(s) 68
BpuEI CTTGAG 1 cut(s) 179
BsaI GGTCTC 1 cut(s) 258
Bsc4I CCNNNNNNNGG 1 cut(s) 53
Bse3DI GCAATG 1 cut(s) 113
BseGI GGATG 2 cut(s) 12, 25
BseLI CCNNNNNNNGG 1 cut(s) 53
BseMI GCAATG 1 cut(s) 113
BseXI GCAGC 1 cut(s) 221
BseYI CCCAGC 1 cut(s) 14
Bsh1236I CGCG 2 cut(s) 262, 347
BslI CCNNNNNNNGG 1 cut(s) 53
BsmAI GTCTC 1 cut(s) 258
Bso31I GGTCTC 1 cut(s) 258
Bsp143I GATC 2 cut(s) 49, 162
Bsp68I TCGCGA 2 cut(s) 262, 347
BspFNI CGCG 2 cut(s) 262, 347
BspLI GGNNCC 1 cut(s) 225
BspMI ACCTGC 2 cut(s) 286, 373
BspTNI GGTCTC 1 cut(s) 258
BsrDI GCAATG 1 cut(s) 113
BssMI GATC 2 cut(s) 49, 162
Bst4CI ACNGT 1 cut(s) 186
BstC8I GCNNGC 2 cut(s) 79, 264
BstF5I GGATG 2 cut(s) 12, 25
BstFNI CGCG 2 cut(s) 262, 347
BstKTI GATC 2 cut(s) 52, 165
BstMAI GTCTC 1 cut(s) 258
BstMBI GATC 2 cut(s) 49, 162
BstSFI CTRYAG 1 cut(s) 72
BstUI CGCG 2 cut(s) 262, 347
BstV1I GCAGC 1 cut(s) 221
BtsCI GGATG 2 cut(s) 12, 25
BtuMI TCGCGA 2 cut(s) 262, 347
BveI ACCTGC 2 cut(s) 286, 373
Cac8I GCNNGC 2 cut(s) 79, 264
CviJI RGCY 5 cut(s) 77, 124, 226, 266, 341
CviKI_1 RGCY 5 cut(s) 77, 124, 226, 266, 341
DpnI GATC 2 cut(s) 51, 164
DpnII GATC 2 cut(s) 49, 162
DraI TTTAAA 1 cut(s) 190
Eco31I GGTCTC 1 cut(s) 258
EcoRI GAATTC 1 cut(s) 139
FaiI YATR 5 cut(s) 69, 74, 93, 128, 374
Fnu4HI GCNGC 1 cut(s) 210
FokI GGATG 2 cut(s) 12, 19
Fsp4HI GCNGC 1 cut(s) 210
GluI GCNGC 1 cut(s) 210
GsaI CCCAGC 1 cut(s) 18
HinfI GANTC 1 cut(s) 109
Hpy188I TCNGA 4 cut(s) 145, 237, 249, 324
Hpy188III TCNNGA 3 cut(s) 47, 261, 346
HpyAV CCTTC 1 cut(s) 379
HpyCH4III ACNGT 1 cut(s) 186
HpyCH4IV ACGT 1 cut(s) 232
HpyCH4V TGCA 2 cut(s) 209, 296
HpySE526I ACGT 1 cut(s) 232
Kzo9I GATC 2 cut(s) 49, 162
LmnI GCTCC 1 cut(s) 223
LpnPI CCDG 6 cut(s) 60, 90, 91, 183, 291, 378
Lsp1109I GCAGC 1 cut(s) 221
LweI GCATC 1 cut(s) 68
MaeII ACGT 1 cut(s) 232
MaeIII GTNAC 3 cut(s) 19, 193, 305
MalI GATC 2 cut(s) 51, 164
MboI GATC 2 cut(s) 49, 162
MboII GAAGA 1 cut(s) 164
MluCI AATT 2 cut(s) 139, 318
MnlI CCTC 2 cut(s) 54, 243
MseI TTAA 2 cut(s) 189, 284
MvnI CGCG 2 cut(s) 262, 347
NdeII GATC 2 cut(s) 49, 162
NlaIV GGNNCC 1 cut(s) 225
NmuCI GTSAC 2 cut(s) 193, 305
NruI TCGCGA 2 cut(s) 262, 347
PcsI WCGNNNNNNNCGW 1 cut(s) 344
PfeI GAWTC 1 cut(s) 109
PkrI GCNGC 1 cut(s) 211
PspFI CCCAGC 1 cut(s) 14
PspN4I GGNNCC 1 cut(s) 225
RruI TCGCGA 2 cut(s) 262, 347
SaqAI TTAA 2 cut(s) 189, 284
SatI GCNGC 1 cut(s) 210
Sau3AI GATC 2 cut(s) 49, 162
SetI ASST 6 cut(s) 46, 235, 254, 268, 280, 367
SfaNI GCATC 1 cut(s) 68
SfcI CTRYAG 1 cut(s) 72
SmlI CTYRAG 1 cut(s) 158
SmoI CTYRAG 1 cut(s) 158
Sse9I AATT 2 cut(s) 139, 318
TaaI ACNGT 1 cut(s) 186
TaiI ACGT 1 cut(s) 235
TasI AATT 2 cut(s) 139, 318
TfiI GAWTC 1 cut(s) 109
Tru1I TTAA 2 cut(s) 189, 284
Tru9I TTAA 2 cut(s) 189, 284
TseFI GTSAC 2 cut(s) 193, 305
TseI GCWGC 1 cut(s) 209
Tsp45I GTSAC 2 cut(s) 193, 305
TspDTI ATGAA 1 cut(s) 361
XapI RAATTY 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.