Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001141.1

Orthogroup ID

OG0001739

Physical Location & Seq

Genomic Coordinates Forward (+)

45634 .. 46999

Gene Structure 1366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001141.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

atgttcaatggcgaccaaggaacaccggagctgcctattggccttgtttattttagaatgaatcttgttgaactattggtggatatttgtcagcttttaatatctgttatagttgtacagaagcttttctttggtgtttgggcctctgcaattgcactaataacttggaaggatgtggagatcaagttattttctcttaatgtggtcgtgaaggtaatcctacagaaaagccaaatctttgatttcttggtcattatgcagttgatggtttggtccattaggcctctggatgaactgaagggtaaaaccttatcctcgagttcttgtgcatctgcattgggtaaagtttttgaagatgcatatgcagtgatgtatgaaccttcaaatttggagatattgatgtggataggagagtgtctcgagaacattcatttacctttggaagatgagaaagaagttgttagtgcaattagtctgatctgtggttctatttataacaaagagttaatgaggaacttattggctagattgctttcttctagctttgaagctattgggaaatctgttgataataggcagagtgtatattctggagatagttgtatgcttgtgctattacaagtgttttggccaatggtagataaacttttcagatctgagcacatgggaaatgatgggaagacaaaaatatttgtgcaagagatctacggaaaatgtgctgcacttgcaattattccaatagtttcagaagaagatgaacaacaattgtttctaaatttcgttttgcgggttcatgatttctctacttatttagatgataatcttgacaccttagcccatgatcttggtgacaatagccttgctgctcttcattgcattgactccactgttgttgagatgttgaacacaagtgttgttgtgttgaagatttacctctttgtgtttactgcttggcctagagctattattgttgatgtgcttactatgtctctcatatccgaactgaggacaatcttcagcatgctagaagttgattctaaaagtgaaacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0007154 GO:0007165 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0023052 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0033036 GO:0033218 GO:0033365 GO:0034504 GO:0034613 GO:0038023 GO:0042277 GO:0042802 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0050896 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0060089 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Xpo1

Protein Analysis

350

Amino Acids

39.43

Weight (kDa)

4.65

Isoelectric Point (pI)

30.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32440
fragaria_vesca	FvH4_5g21480 FvH4_5g21480 FvH4_5g21480
malus_domestica	MD06G1029300.v1.1
prunus_persica	Prupe.5G042500_v2.0.a1 Prupe.5G042500_v2.0.a1 Prupe.5G042500_v2.0.a1 Prupe.5G042500_v2.0.a1
pyrus_communis	pycom06g02360
rosa_chinensis	RchiOBHm_Chr1g0366171 RchiOBHm_Chr7g0208881 RchiOBHm_Chr7g0218031
rosa_laevigata	RLG00000001114 RLG00000003187 RLG00000013234
rosa_multiflora	Rmu_sc0000532.1_g000006 Rmu_sc0001141.1_g000017 Rmu_sc0001879.1_g000041 Rmu_sc0003387.1_g000004 Rmu_sc0003662.1_g000006 Rmu_sc0005320.1_g000008 Rmu_sc0016359.1_g000002
rosa_roxburghii	Rroxscaffold_2G00090500 Rroxscaffold_3G00241470 Rroxscaffold_3G00250080 Rroxscaffold_3G00262770
rosa_rugosa	Rorug07G0107000 Rorug07G0107100 Rorug07G0107200 Rorug07G0312100
rosa_samantha	Rh1CG098000 Rh1DG105400 Rh3BG280200 Rh3DG190500 Rh4AG144100 Rh4CG150800 Rh5BG196800 Rh7AG242100 Rh7BG008700 Rh7BG236900 Rh7CG257000 Rh7CG484900 Rh7DG248000 Rh7DG453300
rosa_wichuraiana	Rw7G020500 Rw7G038690 Rw7G041650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	495
AciI	CCGC	1 cut(s)	787
AcoI	YGGCCR	1 cut(s)	629
AcsI	RAATTY	2 cut(s)	385, 775
AcuI	CTGAAG	2 cut(s)	317, 1000
AfaI	GTAC	1 cut(s)	117
AfiI	CCNNNNNNNGG	1 cut(s)	1005
AgsI	TTSAA	7 cut(s)	7, 71, 353, 384, 548, 904, 925
AluBI	AGCT	6 cut(s)	31, 94, 124, 543, 551, 962
AluI	AGCT	6 cut(s)	31, 94, 124, 543, 551, 962
Alw21I	GWGCWC	1 cut(s)	663
Alw26I	GTCTC	2 cut(s)	422, 993
Ama87I	CYCGRG	2 cut(s)	316, 419
AoxI	GGCC	5 cut(s)	40, 141, 281, 629, 953
ApeKI	GCWGC	3 cut(s)	31, 719, 863
ApoI	RAATTY	2 cut(s)	385, 775
Asp700I	GAANNNNTTC	1 cut(s)	125
AspS9I	GGNCC	2 cut(s)	141, 273
AsuHPI	GGTGA	1 cut(s)	860
AvaI	CYCGRG	2 cut(s)	316, 419
AvaII	GGWCC	1 cut(s)	273
BalI	TGGCCA	1 cut(s)	631
BbsI	GAAGAC	1 cut(s)	686
Bbv12I	GWGCWC	1 cut(s)	663
BbvI	GCAGC	3 cut(s)	18, 706, 850
BccI	CCATC	2 cut(s)	259, 668
BcoDI	GTCTC	2 cut(s)	422, 993
BfaI	CTAG	4 cut(s)	525, 540, 957, 1025
BfmI	CTRYAG	1 cut(s)	221
BglII	AGATCT	2 cut(s)	653, 702
BisI	GCNGC	3 cut(s)	32, 720, 864
BlsI	GCNGC	3 cut(s)	33, 721, 865
Bme18I	GGWCC	1 cut(s)	273
BmeT110I	CYCGRG	2 cut(s)	316, 419
BmgT120I	GGNCC	2 cut(s)	141, 273
BmsI	GCATC	2 cut(s)	338, 346
BpiI	GAAGAC	1 cut(s)	686
BplI	GAGNNNNNCTC	2 cut(s)	402, 434
BpmI	CTGGAG	1 cut(s)	612
Bpu10I	CCTNAGC	1 cut(s)	832
BsaBI	GATNNNNATC	1 cut(s)	819
BsaJI	CCNNGG	1 cut(s)	16
BsaWI	WCCGGW	1 cut(s)	25
BsaXI	ACNNNNNCTCC	2 cut(s)	170, 200
Bsc4I	CCNNNNNNNGG	1 cut(s)	1005
Bse3DI	GCAATG	1 cut(s)	871
Bse8I	GATNNNNATC	1 cut(s)	819
BseDI	CCNNGG	1 cut(s)	16
BseGI	GGATG	2 cut(s)	178, 295
BseJI	GATNNNNATC	1 cut(s)	819
BseLI	CCNNNNNNNGG	1 cut(s)	1005
BseMI	GCAATG	1 cut(s)	871
BseMII	CTCAG	2 cut(s)	648, 995
BseXI	GCAGC	3 cut(s)	18, 706, 850
BsgI	GTGCAG	1 cut(s)	705
BshFI	GGCC	5 cut(s)	42, 143, 283, 631, 955
BsiHKAI	GWGCWC	1 cut(s)	663
BsiHKCI	CYCGRG	2 cut(s)	316, 419
BsiSI	CCGG	1 cut(s)	26
BslI	CCNNNNNNNGG	1 cut(s)	1005
BsmAI	GTCTC	2 cut(s)	422, 993
BsnI	GGCC	5 cut(s)	42, 143, 283, 631, 955
BsoBI	CYCGRG	2 cut(s)	316, 419
Bsp1286I	GDGCHC	1 cut(s)	663
Bsp1407I	TGTACA	1 cut(s)	115
Bsp143I	GATC	5 cut(s)	180, 477, 653, 702, 841
BspACI	CCGC	1 cut(s)	787
BspANI	GGCC	5 cut(s)	42, 143, 283, 631, 955
BspCNI	CTCAG	2 cut(s)	649, 996
BspHI	TCATGA	1 cut(s)	793
BspQI	GCTCTTC	1 cut(s)	873
BsrDI	GCAATG	1 cut(s)	871
BsrGI	TGTACA	1 cut(s)	115
BssECI	CCNNGG	1 cut(s)	16
BssMI	GATC	5 cut(s)	180, 477, 653, 702, 841
BssT1I	CCWWGG	1 cut(s)	16
Bst4CI	ACNGT	1 cut(s)	889
Bst6I	CTCTTC	1 cut(s)	873
BstAUI	TGTACA	1 cut(s)	115
BstC8I	GCNNGC	1 cut(s)	1022
BstDEI	CTNAG	3 cut(s)	657, 832, 1004
BstF5I	GGATG	2 cut(s)	178, 295
BstKTI	GATC	5 cut(s)	183, 480, 656, 705, 844
BstMAI	GTCTC	2 cut(s)	422, 993
BstMBI	GATC	5 cut(s)	180, 477, 653, 702, 841
BstMWI	GCNNNNNNNGC	1 cut(s)	725
BstNSI	RCATGY	1 cut(s)	1024
BstSFI	CTRYAG	1 cut(s)	221
BstV1I	GCAGC	3 cut(s)	18, 706, 850
BstV2I	GAAGAC	1 cut(s)	686
BstX2I	RGATCY	2 cut(s)	653, 702
BstXI	CCANNNNNNTGG	1 cut(s)	845
BstYI	RGATCY	2 cut(s)	653, 702
BsuRI	GGCC	5 cut(s)	42, 143, 283, 631, 955
BtsCI	GGATG	2 cut(s)	178, 295
BtsI	GCAGTG	1 cut(s)	372
BtsIMutI	CAGTG	2 cut(s)	372, 885
Cac8I	GCNNGC	1 cut(s)	1022
CciI	TCATGA	1 cut(s)	793
Cfr13I	GGNCC	2 cut(s)	141, 273
Csp6I	GTAC	1 cut(s)	116
CspCI	CAANNNNNGTGG	2 cut(s)	874, 909
CviAII	CATG	4 cut(s)	664, 794, 839, 1021
CviQI	GTAC	1 cut(s)	116
DdeI	CTNAG	3 cut(s)	657, 832, 1004
DpnI	GATC	5 cut(s)	182, 479, 655, 704, 843
DpnII	GATC	5 cut(s)	180, 477, 653, 702, 841
EaeI	YGGCCR	1 cut(s)	629
Eam1104I	CTCTTC	1 cut(s)	873
EarI	CTCTTC	1 cut(s)	873
Eco130I	CCWWGG	1 cut(s)	16
Eco147I	AGGCCT	1 cut(s)	283
Eco47I	GGWCC	1 cut(s)	273
Eco57I	CTGAAG	2 cut(s)	317, 1000
Eco88I	CYCGRG	2 cut(s)	316, 419
EcoT14I	CCWWGG	1 cut(s)	16
EcoT22I	ATGCAT	1 cut(s)	361
ErhI	CCWWGG	1 cut(s)	16
FaeI	CATG	4 cut(s)	667, 797, 842, 1024
FalI	AAGNNNNNCTT	3 cut(s)	113, 145, 1033
FatI	CATG	4 cut(s)	663, 793, 838, 1020
FauI	CCCGC	1 cut(s)	780
FauNDI	CATATG	1 cut(s)	361
Fnu4HI	GCNGC	3 cut(s)	32, 720, 864
FokI	GGATG	2 cut(s)	185, 302
Fsp4HI	GCNGC	3 cut(s)	32, 720, 864
FspBI	CTAG	4 cut(s)	525, 540, 957, 1025
GluI	GCNGC	3 cut(s)	32, 720, 864
GsuI	CTGGAG	1 cut(s)	612
HaeIII	GGCC	5 cut(s)	42, 143, 283, 631, 955
HapII	CCGG	1 cut(s)	26
Hin1II	CATG	4 cut(s)	667, 797, 842, 1024
HindIII	AAGCTT	1 cut(s)	122
HinfI	GANTC	3 cut(s)	61, 881, 1034
HpaII	CCGG	1 cut(s)	26
HphI	GGTGA	1 cut(s)	860
Hpy166II	GTNNAC	1 cut(s)	945
Hpy188I	TCNGA	5 cut(s)	477, 653, 658, 748, 1000
Hpy188III	TCNNGA	7 cut(s)	208, 287, 419, 421, 591, 794, 824
Hpy8I	GTNNAC	1 cut(s)	945
HpyAV	CCTTC	4 cut(s)	163, 205, 292, 390
HpyCH4III	ACNGT	1 cut(s)	889
HpyF10VI	GCNNNNNNNGC	1 cut(s)	725
HpyF3I	CTNAG	3 cut(s)	657, 832, 1004
Hsp92II	CATG	4 cut(s)	667, 797, 842, 1024
Kzo9I	GATC	5 cut(s)	180, 477, 653, 702, 841
LguI	GCTCTTC	1 cut(s)	873
LmnI	GCTCC	1 cut(s)	28
LpnPI	CCDG	3 cut(s)	39, 272, 576
Lsp1109I	GCAGC	3 cut(s)	18, 706, 850
LweI	GCATC	2 cut(s)	338, 346
MaeI	CTAG	4 cut(s)	525, 540, 957, 1025
MaeIII	GTNAC	1 cut(s)	848
MalI	GATC	5 cut(s)	182, 479, 655, 704, 843
MboI	GATC	5 cut(s)	180, 477, 653, 702, 841
MboII	GAAGA	9 cut(s)	365, 455, 528, 691, 761, 764, 860, 937, 1006
MfeI	CAATTG	2 cut(s)	150, 764
MflI	RGATCY	2 cut(s)	653, 702
MhlI	GDGCHC	1 cut(s)	663
MlsI	TGGCCA	1 cut(s)	631
MluCI	AATT	6 cut(s)	150, 385, 468, 729, 764, 775
MluNI	TGGCCA	1 cut(s)	631
MlyI	GAGTC	1 cut(s)	875
MnlI	CCTC	6 cut(s)	154, 294, 325, 504, 944, 999
Mox20I	TGGCCA	1 cut(s)	631
Mph1103I	ATGCAT	1 cut(s)	361
MroXI	GAANNNNTTC	1 cut(s)	125
MscI	TGGCCA	1 cut(s)	631
MseI	TTAA	3 cut(s)	98, 198, 506
Msp20I	TGGCCA	1 cut(s)	631
MspI	CCGG	1 cut(s)	26
MunI	CAATTG	2 cut(s)	150, 764
MwoI	GCNNNNNNNGC	1 cut(s)	725
NdeI	CATATG	1 cut(s)	361
NdeII	GATC	5 cut(s)	180, 477, 653, 702, 841
NlaIII	CATG	4 cut(s)	667, 797, 842, 1024
NmuCI	GTSAC	1 cut(s)	848
NsiI	ATGCAT	1 cut(s)	361
NspI	RCATGY	1 cut(s)	1024
PaeI	GCATGC	1 cut(s)	1024
PaeR7I	CTCGAG	2 cut(s)	316, 419
PagI	TCATGA	1 cut(s)	793
PceI	AGGCCT	1 cut(s)	283
PciSI	GCTCTTC	1 cut(s)	873
PdmI	GAANNNNTTC	1 cut(s)	125
PfeI	GAWTC	2 cut(s)	61, 1034
PkrI	GCNGC	3 cut(s)	33, 721, 865
PleI	GAGTC	1 cut(s)	875
PpsI	GAGTC	1 cut(s)	875
PsiI	TTATAA	1 cut(s)	495
PspPI	GGNCC	2 cut(s)	141, 273
PspXI	VCTCGAGB	1 cut(s)	316
PsuI	RGATCY	2 cut(s)	653, 702
RsaI	GTAC	1 cut(s)	117
RsaNI	GTAC	1 cut(s)	116
SapI	GCTCTTC	1 cut(s)	873
SaqAI	TTAA	3 cut(s)	98, 198, 506
SatI	GCNGC	3 cut(s)	32, 720, 864
Sau3AI	GATC	5 cut(s)	180, 477, 653, 702, 841
Sau96I	GGNCC	2 cut(s)	141, 273
SchI	GAGTC	1 cut(s)	875
SduI	GDGCHC	1 cut(s)	663
SfaNI	GCATC	2 cut(s)	338, 346
SfcI	CTRYAG	1 cut(s)	221
Sfr274I	CTCGAG	2 cut(s)	316, 419
SinI	GGWCC	1 cut(s)	273
SlaI	CTCGAG	2 cut(s)	316, 419
SmlI	CTYRAG	2 cut(s)	316, 419
SmoI	CTYRAG	2 cut(s)	316, 419
SphI	GCATGC	1 cut(s)	1024
Sse9I	AATT	6 cut(s)	150, 385, 468, 729, 764, 775
SseBI	AGGCCT	1 cut(s)	283
SsiI	CCGC	1 cut(s)	787
SspI	AATATT	1 cut(s)	690
SspMI	CTAG	4 cut(s)	525, 540, 957, 1025
StuI	AGGCCT	1 cut(s)	283
StyI	CCWWGG	1 cut(s)	16
TaaI	ACNGT	1 cut(s)	889
TaqI	TCGA	2 cut(s)	317, 420
TasI	AATT	6 cut(s)	150, 385, 468, 729, 764, 775
TatI	WGTACW	1 cut(s)	115
TfiI	GAWTC	2 cut(s)	61, 1034
Tru1I	TTAA	3 cut(s)	98, 198, 506
Tru9I	TTAA	3 cut(s)	98, 198, 506
TscAI	CASTG	2 cut(s)	372, 892
TseFI	GTSAC	1 cut(s)	848
TseI	GCWGC	3 cut(s)	31, 719, 863
Tsp45I	GTSAC	1 cut(s)	848
TspDTI	ATGAA	7 cut(s)	74, 306, 390, 419, 771, 782, 860
TspGWI	ACGGA	1 cut(s)	723
TspRI	CASTG	2 cut(s)	372, 892
VpaK11BI	GGWCC	1 cut(s)	273
XapI	RAATTY	2 cut(s)	385, 775
XceI	RCATGY	1 cut(s)	1024
XcmI	CCANNNNNNNNNTGG	1 cut(s)	283
XhoI	CTCGAG	2 cut(s)	316, 419
XmnI	GAANNNNTTC	1 cut(s)	125
XspI	CTAG	4 cut(s)	525, 540, 957, 1025
Zsp2I	ATGCAT	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.