Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001739

Physical Location & Seq

Genomic Coordinates Reverse (-)

33748470 .. 33753585

Gene Structure 5116 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00241470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGCCTTTCGGGTTTGATAAGAAGGTTCGTGATAAAGGTAGTGGCCACACTCTCTCAACAGATGAATTTTTTATTCAGAATGAAAAGTTTGCAAGGAATATGAGGCTGCTTTGGGTAAATATTTCCAACTTGATATCCTCAATTGGGAACTTAGAGACAGTGGCATCTACAATTGCTTGGAAGGATGTGGAGATCAAGTTATTTGCTCTTAATGTGGTCGCGGAGGTAATCCTACAAAAAAGCCAAATCCTTGATTTCTTGGTCATTATGCGGTTGATGGTTTGGTCCATTAGGCCTTTGGATGAACCGAAGGGTAGTATGCGCACTCTGCATAGATCTCCTGCAGACGTTGTTGACTCCTATTCTATGTGGATCTTTGTTTTTCAAACAATTGCTAGACCCTTGTTGTTATTTCTTGCTGCTGGAATATCGAAACCTTATCCCCGAGTTCTTGTGCATCCGCATTGCGTAAAATTTTTGAAGATGCCTCTGCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0007154 GO:0007165 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0023052 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0033036 GO:0033218 GO:0033365 GO:0034504 GO:0034613 GO:0038023 GO:0042277 GO:0042802 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0050896 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0060089 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Xpo1

Protein Analysis

165

Amino Acids

18.96

Weight (kDa)

9.81

Isoelectric Point (pI)

33.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32440
fragaria_vesca	FvH4_5g21480 FvH4_5g21480 FvH4_5g21480
malus_domestica	MD06G1029300.v1.1
prunus_persica	Prupe.5G042500_v2.0.a1 Prupe.5G042500_v2.0.a1 Prupe.5G042500_v2.0.a1 Prupe.5G042500_v2.0.a1
pyrus_communis	pycom06g02360
rosa_chinensis	RchiOBHm_Chr1g0366171 RchiOBHm_Chr7g0208881 RchiOBHm_Chr7g0218031
rosa_laevigata	RLG00000001114 RLG00000003187 RLG00000013234
rosa_multiflora	Rmu_sc0000532.1_g000006 Rmu_sc0001141.1_g000017 Rmu_sc0001879.1_g000041 Rmu_sc0003387.1_g000004 Rmu_sc0003662.1_g000006 Rmu_sc0005320.1_g000008 Rmu_sc0016359.1_g000002
rosa_roxburghii	Rroxscaffold_2G00090500 Rroxscaffold_3G00241470 Rroxscaffold_3G00250080 Rroxscaffold_3G00262770
rosa_rugosa	Rorug07G0107000 Rorug07G0107100 Rorug07G0107200 Rorug07G0312100
rosa_samantha	Rh1CG098000 Rh1DG105400 Rh3BG280200 Rh3DG190500 Rh4AG144100 Rh4CG150800 Rh5BG196800 Rh7AG242100 Rh7BG008700 Rh7BG236900 Rh7CG257000 Rh7CG484900 Rh7DG248000 Rh7DG453300
rosa_wichuraiana	Rw7G020500 Rw7G038690 Rw7G041650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	323
AccII	CGCG	1 cut(s)	221
AciI	CCGC	4 cut(s)	221, 271, 461, 493
AclWI	GGATC	1 cut(s)	380
AcoI	YGGCCR	1 cut(s)	43
AcsI	RAATTY	2 cut(s)	65, 473
AfiI	CCNNNNNNNGG	1 cut(s)	144
AgsI	TTSAA	2 cut(s)	386, 481
Alw26I	GTCTC	1 cut(s)	149
AlwI	GGATC	1 cut(s)	380
Ama87I	CYCGRG	1 cut(s)	444
AoxI	GGCC	2 cut(s)	43, 293
ApeKI	GCWGC	2 cut(s)	106, 419
ApoI	RAATTY	2 cut(s)	65, 473
AspLEI	GCGC	1 cut(s)	324
AspS9I	GGNCC	1 cut(s)	285
AvaI	CYCGRG	1 cut(s)	444
AvaII	GGWCC	1 cut(s)	285
BalI	TGGCCA	1 cut(s)	45
BbvI	GCAGC	2 cut(s)	93, 406
BccI	CCATC	1 cut(s)	271
BcoDI	GTCTC	1 cut(s)	149
BfaI	CTAG	1 cut(s)	396
BfmI	CTRYAG	1 cut(s)	342
BglII	AGATCT	1 cut(s)	335
BisI	GCNGC	2 cut(s)	107, 420
BlsI	GCNGC	2 cut(s)	108, 421
Bme18I	GGWCC	1 cut(s)	285
BmeT110I	CYCGRG	1 cut(s)	444
BmgT120I	GGNCC	1 cut(s)	285
BmsI	GCATC	3 cut(s)	173, 466, 474
BsaXI	ACNNNNNCTCC	2 cut(s)	182, 212
Bsc4I	CCNNNNNNNGG	1 cut(s)	144
Bse3DI	GCAATG	1 cut(s)	463
BseGI	GGATG	3 cut(s)	190, 307, 457
BseLI	CCNNNNNNNGG	1 cut(s)	144
BseMI	GCAATG	1 cut(s)	463
BseXI	GCAGC	2 cut(s)	93, 406
Bsh1236I	CGCG	1 cut(s)	221
BshFI	GGCC	2 cut(s)	45, 295
BsiHKCI	CYCGRG	1 cut(s)	444
BslI	CCNNNNNNNGG	1 cut(s)	144
BsmAI	GTCTC	1 cut(s)	149
BsnI	GGCC	2 cut(s)	45, 295
BsoBI	CYCGRG	1 cut(s)	444
Bsp143I	GATC	3 cut(s)	192, 335, 372
BspACI	CCGC	4 cut(s)	221, 271, 461, 493
BspANI	GGCC	2 cut(s)	45, 295
BspFNI	CGCG	1 cut(s)	221
BspMAI	CTGCAG	1 cut(s)	346
BspPI	GGATC	1 cut(s)	380
BsrDI	GCAATG	1 cut(s)	463
BssMI	GATC	3 cut(s)	192, 335, 372
Bst4CI	ACNGT	1 cut(s)	160
BstDEI	CTNAG	1 cut(s)	151
BstF5I	GGATG	3 cut(s)	190, 307, 457
BstFNI	CGCG	1 cut(s)	221
BstHHI	GCGC	1 cut(s)	324
BstKTI	GATC	3 cut(s)	195, 338, 375
BstMAI	GTCTC	1 cut(s)	149
BstMBI	GATC	3 cut(s)	192, 335, 372
BstMWI	GCNNNNNNNGC	1 cut(s)	328
BstSFI	CTRYAG	1 cut(s)	342
BstUI	CGCG	1 cut(s)	221
BstV1I	GCAGC	2 cut(s)	93, 406
BstX2I	RGATCY	2 cut(s)	335, 372
BstYI	RGATCY	2 cut(s)	335, 372
BsuRI	GGCC	2 cut(s)	45, 295
BtsCI	GGATG	3 cut(s)	190, 307, 457
BtsIMutI	CAGTG	1 cut(s)	165
CfoI	GCGC	1 cut(s)	324
Cfr13I	GGNCC	1 cut(s)	285
CviJI	RGCY	4 cut(s)	45, 106, 243, 295
CviKI_1	RGCY	4 cut(s)	45, 106, 243, 295
DdeI	CTNAG	1 cut(s)	151
DpnI	GATC	3 cut(s)	194, 337, 374
DpnII	GATC	3 cut(s)	192, 335, 372
EaeI	YGGCCR	1 cut(s)	43
Eco147I	AGGCCT	1 cut(s)	295
Eco32I	GATATC	1 cut(s)	135
Eco47I	GGWCC	1 cut(s)	285
Eco88I	CYCGRG	1 cut(s)	444
EcoRV	GATATC	1 cut(s)	135
FaiI	YATR	5 cut(s)	101, 269, 320, 333, 368
Fnu4HI	GCNGC	2 cut(s)	107, 420
FokI	GGATG	3 cut(s)	197, 314, 444
Fsp4HI	GCNGC	2 cut(s)	107, 420
FspAI	RTGCGCAY	1 cut(s)	323
FspBI	CTAG	1 cut(s)	396
FspI	TGCGCA	1 cut(s)	323
GlaI	GCGC	1 cut(s)	323
GluI	GCNGC	2 cut(s)	107, 420
HaeIII	GGCC	2 cut(s)	45, 295
HhaI	GCGC	1 cut(s)	324
Hin6I	GCGC	1 cut(s)	322
HinP1I	GCGC	1 cut(s)	322
HincII	GTYRAC	1 cut(s)	355
HindII	GTYRAC	1 cut(s)	355
HinfI	GANTC	1 cut(s)	356
Hpy166II	GTNNAC	1 cut(s)	355
Hpy188I	TCNGA	1 cut(s)	78
Hpy188III	TCNNGA	1 cut(s)	29
Hpy8I	GTNNAC	1 cut(s)	355
HpyAV	CCTTC	3 cut(s)	16, 175, 304
HpyCH4III	ACNGT	1 cut(s)	160
HpyCH4IV	ACGT	1 cut(s)	348
HpyCH4V	TGCA	4 cut(s)	92, 331, 344, 457
HpyF10VI	GCNNNNNNNGC	1 cut(s)	328
HpyF3I	CTNAG	1 cut(s)	151
HpySE526I	ACGT	1 cut(s)	348
HspAI	GCGC	1 cut(s)	322
Kzo9I	GATC	3 cut(s)	192, 335, 372
LpnPI	CCDG	2 cut(s)	354, 408
Lsp1109I	GCAGC	2 cut(s)	93, 406
LweI	GCATC	3 cut(s)	173, 466, 474
MaeI	CTAG	1 cut(s)	396
MaeII	ACGT	1 cut(s)	348
MalI	GATC	3 cut(s)	194, 337, 374
MboI	GATC	3 cut(s)	192, 335, 372
MboII	GAAGA	1 cut(s)	493
MfeI	CAATTG	3 cut(s)	141, 171, 390
MflI	RGATCY	2 cut(s)	335, 372
MlsI	TGGCCA	1 cut(s)	45
MluCI	AATT	5 cut(s)	65, 141, 171, 390, 473
MluNI	TGGCCA	1 cut(s)	45
MlyI	GAGTC	1 cut(s)	350
MmeI	TCCRAC	1 cut(s)	150
MnlI	CCTC	4 cut(s)	96, 148, 217, 498
Mox20I	TGGCCA	1 cut(s)	45
MscI	TGGCCA	1 cut(s)	45
MseI	TTAA	1 cut(s)	210
Msp20I	TGGCCA	1 cut(s)	45
MunI	CAATTG	3 cut(s)	141, 171, 390
MvnI	CGCG	1 cut(s)	221
MwoI	GCNNNNNNNGC	1 cut(s)	328
NdeII	GATC	3 cut(s)	192, 335, 372
NsbI	TGCGCA	1 cut(s)	323
PceI	AGGCCT	1 cut(s)	295
PkrI	GCNGC	2 cut(s)	108, 421
PleI	GAGTC	1 cut(s)	350
PpsI	GAGTC	1 cut(s)	350
PspPI	GGNCC	1 cut(s)	285
PstI	CTGCAG	1 cut(s)	346
PsuI	RGATCY	2 cut(s)	335, 372
SaqAI	TTAA	1 cut(s)	210
SatI	GCNGC	2 cut(s)	107, 420
Sau3AI	GATC	3 cut(s)	192, 335, 372
Sau96I	GGNCC	1 cut(s)	285
SchI	GAGTC	1 cut(s)	350
SetI	ASST	5 cut(s)	27, 40, 228, 351, 439
SfaNI	GCATC	3 cut(s)	173, 466, 474
SfcI	CTRYAG	1 cut(s)	342
SinI	GGWCC	1 cut(s)	285
Sse9I	AATT	5 cut(s)	65, 141, 171, 390, 473
SseBI	AGGCCT	1 cut(s)	295
SsiI	CCGC	4 cut(s)	221, 271, 461, 493
SspI	AATATT	1 cut(s)	121
SspMI	CTAG	1 cut(s)	396
StuI	AGGCCT	1 cut(s)	295
TaaI	ACNGT	1 cut(s)	160
TaiI	ACGT	1 cut(s)	351
TaqI	TCGA	1 cut(s)	431
TasI	AATT	5 cut(s)	65, 141, 171, 390, 473
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TscAI	CASTG	1 cut(s)	165
TseI	GCWGC	2 cut(s)	106, 419
TspDTI	ATGAA	3 cut(s)	78, 96, 318
TspRI	CASTG	1 cut(s)	165
VpaK11BI	GGWCC	1 cut(s)	285
XapI	RAATTY	2 cut(s)	65, 473
XcmI	CCANNNNNNNNNTGG	1 cut(s)	295
XspI	CTAG	1 cut(s)	396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.