Rh3DG190500

ATP-dependent RNA helicase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0001739
Physical Location & Seq
Reverse (-)
16964278 .. 16967161
2884 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG190500.1

Sequence Viewer

Length: 384 bp
ATGAAGAATGAGATGGTTACTCATCCAAAGGAAGTTTTACCTCCTAATCTTGGGGCATCTATTTATGCTATAGCCTGCGTTCTATCTTATGATGGTCTATCTGGGATTCCATTGCCAAAGCCTATGGATTTGCCGAATTCAGATTTAGAAGAACTTGAGATCGGTAAAGATGGAAAGGCACAGTTTAAAGTGACAGGAAATAAAGCAGCAAAATCAAAGGAGCCATTACGTCAGAGAGTTTGTCAGAGGTCTCTATCGCGAGCTACTGATTTACCTGCCTTAAATGGATTTGCAAAGTTGTGTGACGACCCATCAATTCAGAGTGTTCCCCCACCGGCTTTCGCGAACGCTACTGATTTACCTGCCTTCATAACGCCTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0006139 GO:0006259 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007276 GO:0007281 GO:0007283 GO:0007286 GO:0007292 GO:0007346 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0009994 GO:0010033 GO:0010467 GO:0012505 GO:0016043 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019899 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0032392 GO:0032501 GO:0032502 GO:0032504 GO:0032508 GO:0032991 GO:0034097 GO:0034458 GO:0034612 GO:0034641 GO:0035770 GO:0035821 GO:0042221 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043900 GO:0043902 GO:0043903 GO:0044237 GO:0044238 GO:0044260 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0044788 GO:0044794 GO:0044827 GO:0044829 GO:0045069 GO:0045070 GO:0045786 GO:0045787 GO:0045930 GO:0046483 GO:0048232 GO:0048468 GO:0048477 GO:0048515 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048524 GO:0048599 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050792 GO:0050794 GO:0050896 GO:0051276 GO:0051445 GO:0051446 GO:0051702 GO:0051704 GO:0051726 GO:0051728 GO:0051729 GO:0051817 GO:0051851 GO:0060184 GO:0065007 GO:0070035 GO:0070063 GO:0070555 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:0140098 GO:1901360 GO:1901363 GO:1903900 GO:1903902 GO:1990247 GO:1990904 GO:2000241 GO:2000243
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
DEAD HA2 Helicase_C OB_NTP_bind R3H

Protein Analysis

127

Amino Acids

13.63

Weight (kDa)

5.83

Isoelectric Point (pI)

46.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 283, 370
AccII CGCG 2 cut(s) 259, 344
AcsI RAATTY 1 cut(s) 136
AfiI CCNNNNNNNGG 1 cut(s) 50
AluBI AGCT 1 cut(s) 263
AluI AGCT 1 cut(s) 263
Alw26I GTCTC 1 cut(s) 255
ApeKI GCWGC 1 cut(s) 206
ApoI RAATTY 1 cut(s) 136
BbvI GCAGC 1 cut(s) 218
BccI CCATC 4 cut(s) 7, 86, 164, 319
BcoDI GTCTC 1 cut(s) 255
BfmI CTRYAG 1 cut(s) 69
BfuAI ACCTGC 2 cut(s) 283, 370
BisI GCNGC 1 cut(s) 207
BlsI GCNGC 1 cut(s) 208
BmiI GGNNCC 1 cut(s) 222
BmsI GCATC 1 cut(s) 65
BpuEI CTTGAG 1 cut(s) 176
BsaI GGTCTC 1 cut(s) 255
Bsc4I CCNNNNNNNGG 1 cut(s) 50
Bse118I RCCGGY 1 cut(s) 334
Bse3DI GCAATG 1 cut(s) 110
BseGI GGATG 1 cut(s) 22
BseLI CCNNNNNNNGG 1 cut(s) 50
BseMI GCAATG 1 cut(s) 110
BseXI GCAGC 1 cut(s) 218
Bsh1236I CGCG 2 cut(s) 259, 344
BsiSI CCGG 1 cut(s) 335
BslI CCNNNNNNNGG 1 cut(s) 50
BsmAI GTCTC 1 cut(s) 255
Bso31I GGTCTC 1 cut(s) 255
Bsp143I GATC 1 cut(s) 159
Bsp68I TCGCGA 2 cut(s) 259, 344
BspFNI CGCG 2 cut(s) 259, 344
BspLI GGNNCC 1 cut(s) 222
BspMI ACCTGC 2 cut(s) 283, 370
BspTNI GGTCTC 1 cut(s) 255
BsrDI GCAATG 1 cut(s) 110
BsrFI RCCGGY 1 cut(s) 334
BssAI RCCGGY 1 cut(s) 334
BssMI GATC 1 cut(s) 159
Bst4CI ACNGT 1 cut(s) 183
BstC8I GCNNGC 2 cut(s) 76, 261
BstF5I GGATG 1 cut(s) 22
BstFNI CGCG 2 cut(s) 259, 344
BstKTI GATC 1 cut(s) 162
BstMAI GTCTC 1 cut(s) 255
BstMBI GATC 1 cut(s) 159
BstSFI CTRYAG 1 cut(s) 69
BstUI CGCG 2 cut(s) 259, 344
BstV1I GCAGC 1 cut(s) 218
BtsCI GGATG 1 cut(s) 22
BtuMI TCGCGA 2 cut(s) 259, 344
BveI ACCTGC 2 cut(s) 283, 370
Cac8I GCNNGC 2 cut(s) 76, 261
Cfr10I RCCGGY 1 cut(s) 334
CviJI RGCY 5 cut(s) 74, 121, 223, 263, 338
CviKI_1 RGCY 5 cut(s) 74, 121, 223, 263, 338
DpnI GATC 1 cut(s) 161
DpnII GATC 1 cut(s) 159
DraI TTTAAA 1 cut(s) 187
Eco31I GGTCTC 1 cut(s) 255
EcoRI GAATTC 1 cut(s) 136
FaiI YATR 5 cut(s) 66, 71, 90, 125, 371
Fnu4HI GCNGC 1 cut(s) 207
FokI GGATG 1 cut(s) 9
Fsp4HI GCNGC 1 cut(s) 207
GluI GCNGC 1 cut(s) 207
HapII CCGG 1 cut(s) 335
HinfI GANTC 1 cut(s) 106
HpaII CCGG 1 cut(s) 335
Hpy188I TCNGA 4 cut(s) 142, 234, 246, 321
Hpy188III TCNNGA 2 cut(s) 258, 343
HpyAV CCTTC 1 cut(s) 376
HpyCH4III ACNGT 1 cut(s) 183
HpyCH4IV ACGT 1 cut(s) 229
HpyCH4V TGCA 1 cut(s) 293
HpySE526I ACGT 1 cut(s) 229
Kzo9I GATC 1 cut(s) 159
LmnI GCTCC 1 cut(s) 220
LpnPI CCDG 6 cut(s) 87, 88, 180, 288, 348, 375
Lsp1109I GCAGC 1 cut(s) 218
LweI GCATC 1 cut(s) 65
MaeII ACGT 1 cut(s) 229
MaeIII GTNAC 3 cut(s) 16, 190, 302
MalI GATC 1 cut(s) 161
MboI GATC 1 cut(s) 159
MboII GAAGA 2 cut(s) 16, 161
MluCI AATT 2 cut(s) 136, 315
MnlI CCTC 2 cut(s) 51, 240
MseI TTAA 2 cut(s) 186, 281
MspI CCGG 1 cut(s) 335
MvnI CGCG 2 cut(s) 259, 344
NdeII GATC 1 cut(s) 159
NlaIV GGNNCC 1 cut(s) 222
NmuCI GTSAC 2 cut(s) 190, 302
NruI TCGCGA 2 cut(s) 259, 344
PfeI GAWTC 1 cut(s) 106
PkrI GCNGC 1 cut(s) 208
PspN4I GGNNCC 1 cut(s) 222
RruI TCGCGA 2 cut(s) 259, 344
SaqAI TTAA 2 cut(s) 186, 281
SatI GCNGC 1 cut(s) 207
Sau3AI GATC 1 cut(s) 159
SetI ASST 6 cut(s) 43, 232, 251, 265, 277, 364
SfaNI GCATC 1 cut(s) 65
SfcI CTRYAG 1 cut(s) 69
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
Sse9I AATT 2 cut(s) 136, 315
TaaI ACNGT 1 cut(s) 183
TaiI ACGT 1 cut(s) 232
TasI AATT 2 cut(s) 136, 315
TfiI GAWTC 1 cut(s) 106
Tru1I TTAA 2 cut(s) 186, 281
Tru9I TTAA 2 cut(s) 186, 281
TseFI GTSAC 2 cut(s) 190, 302
TseI GCWGC 1 cut(s) 206
Tsp45I GTSAC 2 cut(s) 190, 302
TspDTI ATGAA 2 cut(s) 17, 358
XapI RAATTY 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.