Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000532.1

Orthogroup ID

OG0016347

Physical Location & Seq

Genomic Coordinates Reverse (-)

10286 .. 11455

Gene Structure 1170 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000532.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

atgaagatctcccttcgtctccaagacgaccaagatacccaacactactgcaacccactgatcagagccaaaatccccatcaccattttcaaccagcctttcacttcttcaatagccaccgtcccatccaccaactcctcctctcacctctccttttctctctcctcaaacttctcttccggcccttctctcaaactctcttactctcacacctccaccaccactccctcccccttctctctctccctcaagtctggtttgggcctcttcggctccccaaaccactcccctcttgttttcactgcccgcttctctctctcccacactaacccaactttctctctccacatcaagccccaattcggcaacttttcactgaaaaagtccgccttttcggactctgagctttctgggtcttgctcaaatggtgatttggattctgggtcctgctcgaacggtggttttgtggatgggtttgttgtctcggaagggtcgtcttcttggcaggagctgagtttggagcctcgtgggggtaaagatgtaaatggggggattgggtctgtggaggagaggcagttgggtttgaagaacggtggaaaagatgggtttttgaatgggattgctgtgatggccaggactgttttgcctgtgacgaaaagagtgatggtgaatatgcggtggggcgtgaactttccggcgaagttggggaccaagctgccgtatttgacagtgaataagattgctgtggagacagttgaggaggtgaagggagaggaggagaagagtggtgagagtagtgtaaaggatttggaattgttgaaggggatgtggttatggatgaggagggatttggaggttttggacaaggagaatagggatatgaagcagaggttggaggatatgaagtctggagtttctgggaggcattttcgtggggaaagtgatgcttcgaggaagagagtgttgccgccattgggtgagacttctggtgagtttgagaggtggaggaacaagaagggtgggagagaagagaatgtgcgaacagagtctcacacaccggtgaagagtgtcagagaagagagtattcgggtggattcgaagaagtctaccaatcaggcaagtgatttggaatctgaattggagagagctataaaggctgctacggcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

389

Amino Acids

42.64

Weight (kDa)

8.96

Isoelectric Point (pI)

42.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016347)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g21440
malus_domestica	MD06G1029200.v1.1
prunus_persica	Prupe.5G042700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0208871
rosa_laevigata	RLG00000003188
rosa_multiflora	Rmu_sc0000532.1_g000005 Rmu_sc0001482.1_g000003 Rmu_sc0016359.1_g000001
rosa_roxburghii	Rroxscaffold_3G00250090
rosa_rugosa	Rorug07G0107000
rosa_samantha	Rh7AG242000 Rh7BG236800 Rh7CG256900 Rh7DG247900
rosa_wichuraiana	Rw7G020490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1106
AciI	CCGC	4 cut(s)	307, 387, 676, 968
AcoI	YGGCCR	1 cut(s)	630
AfiI	CCNNNNNNNGG	3 cut(s)	362, 530, 974
AgeI	ACCGGT	1 cut(s)	1057
AgsI	TTSAA	5 cut(s)	91, 111, 586, 613, 820
AjnI	CCWGG	1 cut(s)	632
AjuI	GAANNNNNNNTTGG	2 cut(s)	875, 907
AleI	CACNNNNGTG	1 cut(s)	1058
AluBI	AGCT	4 cut(s)	406, 511, 715, 1148
AluI	AGCT	4 cut(s)	406, 511, 715, 1148
Alw26I	GTCTC	5 cut(s)	23, 487, 743, 974, 1053
AlwNI	CAGNNNCTG	1 cut(s)	511
AoxI	GGCC	3 cut(s)	181, 262, 630
ApeKI	GCWGC	2 cut(s)	715, 1157
AsiGI	ACCGGT	1 cut(s)	1057
AspS9I	GGNCC	4 cut(s)	182, 262, 444, 708
AsuHPI	GGTGA	9 cut(s)	73, 137, 440, 679, 775, 800, 989, 1001, 1072
AsuII	TTCGAA	1 cut(s)	1097
AvaII	GGWCC	2 cut(s)	444, 708
BalI	TGGCCA	1 cut(s)	632
BauI	CACGAG	1 cut(s)	525
BbsI	GAAGAC	1 cut(s)	489
BbvI	GCAGC	2 cut(s)	702, 1144
BccI	CCATC	6 cut(s)	86, 133, 464, 596, 622, 658
BceAI	ACGGC	1 cut(s)	703
BciT130I	CCWGG	1 cut(s)	634
BclI	TGATCA	1 cut(s)	60
BcoDI	GTCTC	5 cut(s)	23, 487, 743, 974, 1053
BglI	GCCNNNNNGGC	1 cut(s)	270
BglII	AGATCT	1 cut(s)	6
BisI	GCNGC	3 cut(s)	716, 968, 1158
BlsI	GCNGC	3 cut(s)	717, 969, 1159
Bme1390I	CCNGG	1 cut(s)	634
Bme18I	GGWCC	2 cut(s)	444, 708
BmgT120I	GGNCC	4 cut(s)	182, 262, 444, 708
BmiI	GGNNCC	4 cut(s)	274, 445, 522, 709
BmrFI	CCNGG	1 cut(s)	634
BmsI	GCATC	1 cut(s)	934
BpiI	GAAGAC	1 cut(s)	489
BpmI	CTGGAG	1 cut(s)	930
Bpu14I	TTCGAA	1 cut(s)	1097
BpuEI	CTTGAG	1 cut(s)	233
BsaWI	WCCGGW	1 cut(s)	1057
BsaXI	ACNNNNNCTCC	4 cut(s)	208, 238, 560, 590
Bsc4I	CCNNNNNNNGG	3 cut(s)	362, 530, 974
Bse118I	RCCGGY	1 cut(s)	1057
BseBI	CCWGG	1 cut(s)	634
BseGI	GGATG	4 cut(s)	125, 475, 831, 843
BseLI	CCNNNNNNNGG	3 cut(s)	362, 530, 974
BseMII	CTCAG	2 cut(s)	393, 503
BseRI	GAGGAG	8 cut(s)	127, 130, 154, 581, 773, 788, 791, 856
BseXI	GCAGC	2 cut(s)	702, 1144
BshFI	GGCC	3 cut(s)	183, 264, 632
BshTI	ACCGGT	1 cut(s)	1057
BsiSI	CCGG	3 cut(s)	180, 695, 1058
BslFI	GGGAC	2 cut(s)	107, 721
BslI	CCNNNNNNNGG	3 cut(s)	362, 530, 974
BsmAI	GTCTC	5 cut(s)	23, 487, 743, 974, 1053
BsmBI	CGTCTC	1 cut(s)	23
BsmFI	GGGAC	2 cut(s)	107, 721
BsnI	GGCC	3 cut(s)	183, 264, 632
Bsp119I	TTCGAA	1 cut(s)	1097
Bsp143I	GATC	2 cut(s)	6, 60
BspACI	CCGC	4 cut(s)	307, 387, 676, 968
BspANI	GGCC	3 cut(s)	183, 264, 632
BspCNI	CTCAG	2 cut(s)	394, 504
BspLI	GGNNCC	4 cut(s)	274, 445, 522, 709
BspT104I	TTCGAA	1 cut(s)	1097
BsrFI	RCCGGY	1 cut(s)	1057
BssAI	RCCGGY	1 cut(s)	1057
BssMI	GATC	2 cut(s)	6, 60
BssSI	CACGAG	1 cut(s)	525
Bst2BI	CACGAG	1 cut(s)	525
Bst2UI	CCWGG	1 cut(s)	634
Bst4CI	ACNGT	6 cut(s)	121, 458, 593, 640, 730, 754
Bst6I	CTCTTC	7 cut(s)	181, 272, 776, 950, 1023, 1058, 1071
BstBI	TTCGAA	1 cut(s)	1097
BstC8I	GCNNGC	1 cut(s)	307
BstDEI	CTNAG	3 cut(s)	402, 512, 1167
BstF5I	GGATG	4 cut(s)	125, 475, 831, 843
BstKTI	GATC	2 cut(s)	9, 63
BstMAI	GTCTC	5 cut(s)	23, 487, 743, 974, 1053
BstMBI	GATC	2 cut(s)	6, 60
BstMWI	GCNNNNNNNGC	4 cut(s)	270, 629, 1154, 1163
BstNI	CCWGG	1 cut(s)	634
BstSCI	CCNGG	1 cut(s)	632
BstV1I	GCAGC	2 cut(s)	702, 1144
BstV2I	GAAGAC	1 cut(s)	489
BstX2I	RGATCY	1 cut(s)	6
BstYI	RGATCY	1 cut(s)	6
BsuRI	GGCC	3 cut(s)	183, 264, 632
BtsCI	GGATG	4 cut(s)	125, 475, 831, 843
BtsI	GCAGTG	1 cut(s)	300
BtsIMutI	CAGTG	4 cut(s)	56, 300, 374, 735
Cac8I	GCNNGC	1 cut(s)	307
CaiI	CAGNNNCTG	1 cut(s)	511
Cfr10I	RCCGGY	1 cut(s)	1057
Cfr13I	GGNCC	4 cut(s)	182, 262, 444, 708
CspAI	ACCGGT	1 cut(s)	1057
CspCI	CAANNNNNGTGG	2 cut(s)	1000, 1035
DdeI	CTNAG	3 cut(s)	402, 512, 1167
DpnI	GATC	2 cut(s)	8, 62
DpnII	GATC	2 cut(s)	6, 60
EaeI	YGGCCR	1 cut(s)	630
Eam1104I	CTCTTC	7 cut(s)	181, 272, 776, 950, 1023, 1058, 1071
EarI	CTCTTC	7 cut(s)	181, 272, 776, 950, 1023, 1058, 1071
EciI	GGCGGA	1 cut(s)	376
Eco47I	GGWCC	2 cut(s)	444, 708
EcoO109I	RGGNCCY	1 cut(s)	444
EcoRII	CCWGG	1 cut(s)	632
Esp3I	CGTCTC	1 cut(s)	23
FaiI	YATR	5 cut(s)	674, 835, 881, 902, 1151
FalI	AAGNNNNNCTT	4 cut(s)	374, 406, 931, 963
FaqI	GGGAC	2 cut(s)	107, 721
FauI	CCCGC	1 cut(s)	314
FbaI	TGATCA	1 cut(s)	60
FblI	GTMKAC	1 cut(s)	1106
Fnu4HI	GCNGC	3 cut(s)	716, 968, 1158
FokI	GGATG	4 cut(s)	112, 482, 838, 850
Fsp4HI	GCNGC	3 cut(s)	716, 968, 1158
GluI	GCNGC	3 cut(s)	716, 968, 1158
GsuI	CTGGAG	1 cut(s)	930
HaeIII	GGCC	3 cut(s)	183, 264, 632
HapII	CCGG	3 cut(s)	180, 695, 1058
HinfI	GANTC	5 cut(s)	398, 437, 1046, 1094, 1130
HpaII	CCGG	3 cut(s)	180, 695, 1058
HphI	GGTGA	9 cut(s)	73, 137, 440, 679, 775, 800, 989, 1001, 1072
Hpy166II	GTNNAC	2 cut(s)	688, 1107
Hpy188I	TCNGA	6 cut(s)	65, 397, 403, 487, 1073, 1135
Hpy188III	TCNNGA	1 cut(s)	909
Hpy8I	GTNNAC	2 cut(s)	688, 1107
HpyAV	CCTTC	7 cut(s)	23, 195, 244, 482, 760, 814, 1009
HpyCH4III	ACNGT	6 cut(s)	121, 458, 593, 640, 730, 754
HpyCH4V	TGCA	1 cut(s)	51
HpyF10VI	GCNNNNNNNGC	4 cut(s)	270, 629, 1154, 1163
HpyF3I	CTNAG	3 cut(s)	402, 512, 1167
Ksp22I	TGATCA	1 cut(s)	60
Kzo9I	GATC	2 cut(s)	6, 60
LmnI	GCTCC	3 cut(s)	278, 508, 520
Lsp1109I	GCAGC	2 cut(s)	702, 1144
LweI	GCATC	1 cut(s)	934
MaeIII	GTNAC	1 cut(s)	649
MalI	GATC	2 cut(s)	8, 62
MboI	GATC	2 cut(s)	6, 60
MflI	RGATCY	1 cut(s)	6
MlsI	TGGCCA	1 cut(s)	632
MluCI	AATT	3 cut(s)	359, 812, 1136
MluNI	TGGCCA	1 cut(s)	632
MlyI	GAGTC	2 cut(s)	392, 1055
MmeI	TCCRAC	1 cut(s)	873
Mox20I	TGGCCA	1 cut(s)	632
MscI	TGGCCA	1 cut(s)	632
MslI	CAYNNNNRTG	2 cut(s)	930, 1058
Msp20I	TGGCCA	1 cut(s)	632
MspI	CCGG	3 cut(s)	180, 695, 1058
MspR9I	CCNGG	1 cut(s)	634
MvaI	CCWGG	1 cut(s)	634
MwoI	GCNNNNNNNGC	4 cut(s)	270, 629, 1154, 1163
NdeII	GATC	2 cut(s)	6, 60
NlaIV	GGNNCC	4 cut(s)	274, 445, 522, 709
NmuCI	GTSAC	1 cut(s)	649
NspV	TTCGAA	1 cut(s)	1097
OliI	CACNNNNGTG	1 cut(s)	1058
PcsI	WCGNNNNNNNCGW	1 cut(s)	491
PfeI	GAWTC	3 cut(s)	437, 1094, 1130
PinAI	ACCGGT	1 cut(s)	1057
PkrI	GCNGC	3 cut(s)	717, 969, 1159
PleI	GAGTC	2 cut(s)	392, 1054
PpsI	GAGTC	2 cut(s)	392, 1054
PpuMI	RGGWCCY	1 cut(s)	444
Psp5II	RGGWCCY	1 cut(s)	444
Psp6I	CCWGG	1 cut(s)	632
PspGI	CCWGG	1 cut(s)	632
PspN4I	GGNNCC	4 cut(s)	274, 445, 522, 709
PspPI	GGNCC	4 cut(s)	182, 262, 444, 708
PspPPI	RGGWCCY	1 cut(s)	444
PstNI	CAGNNNCTG	1 cut(s)	511
PsuI	RGATCY	1 cut(s)	6
RseI	CAYNNNNRTG	2 cut(s)	930, 1058
SatI	GCNGC	3 cut(s)	716, 968, 1158
Sau3AI	GATC	2 cut(s)	6, 60
Sau96I	GGNCC	4 cut(s)	182, 262, 444, 708
SchI	GAGTC	2 cut(s)	392, 1055
ScrFI	CCNGG	1 cut(s)	634
SfaNI	GCATC	1 cut(s)	934
SfuI	TTCGAA	1 cut(s)	1097
SgrAI	CRCCGGYG	1 cut(s)	1057
SinI	GGWCC	2 cut(s)	444, 708
SmiMI	CAYNNNNRTG	2 cut(s)	930, 1058
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
Sse9I	AATT	3 cut(s)	359, 812, 1136
SsiI	CCGC	4 cut(s)	307, 387, 676, 968
StyD4I	CCNGG	1 cut(s)	632
TaaI	ACNGT	6 cut(s)	121, 458, 593, 640, 730, 754
TaqI	TCGA	3 cut(s)	452, 950, 1097
TasI	AATT	3 cut(s)	359, 812, 1136
TauI	GCSGC	1 cut(s)	970
TfiI	GAWTC	3 cut(s)	437, 1094, 1130
TscAI	CASTG	4 cut(s)	63, 307, 381, 735
TseFI	GTSAC	1 cut(s)	649
TseI	GCWGC	2 cut(s)	715, 1157
Tsp45I	GTSAC	1 cut(s)	649
TspDTI	ATGAA	3 cut(s)	17, 896, 917
TspRI	CASTG	4 cut(s)	63, 307, 381, 735
VpaK11BI	GGWCC	2 cut(s)	444, 708
XmiI	GTMKAC	1 cut(s)	1106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.