No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g21440 |
| malus_domestica | MD06G1029200.v1.1 |
| prunus_persica | Prupe.5G042700_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr7g0208871 |
| rosa_laevigata | RLG00000003188 |
| rosa_multiflora | Rmu_sc0000532.1_g000005 Rmu_sc0001482.1_g000003 Rmu_sc0016359.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00250090 |
| rosa_rugosa | Rorug07G0107000 |
| rosa_samantha | Rh7AG242000 Rh7BG236800 Rh7CG256900 Rh7DG247900 |
| rosa_wichuraiana | Rw7G020490 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 1070 |
| AciI | CCGC | 3 cut(s) | 49, 387, 932 |
| AcoI | YGGCCR | 1 cut(s) | 630 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 362, 530, 938, 1021 |
| AgsI | TTSAA | 6 cut(s) | 91, 111, 586, 613, 784, 1062 |
| AjnI | CCWGG | 1 cut(s) | 632 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 839, 871 |
| AleI | CACNNNNGTG | 1 cut(s) | 1022 |
| AluBI | AGCT | 4 cut(s) | 406, 511, 679, 1112 |
| AluI | AGCT | 4 cut(s) | 406, 511, 679, 1112 |
| Alw26I | GTCTC | 4 cut(s) | 23, 487, 707, 938 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 511 |
| AoxI | GGCC | 3 cut(s) | 181, 262, 630 |
| ApeKI | GCWGC | 2 cut(s) | 679, 1121 |
| AspS9I | GGNCC | 4 cut(s) | 182, 262, 444, 672 |
| AsuHPI | GGTGA | 8 cut(s) | 73, 137, 440, 739, 764, 953, 965, 1036 |
| AvaII | GGWCC | 2 cut(s) | 444, 672 |
| BalI | TGGCCA | 1 cut(s) | 632 |
| BauI | CACGAG | 1 cut(s) | 525 |
| BbvI | GCAGC | 2 cut(s) | 666, 1108 |
| BccI | CCATC | 5 cut(s) | 86, 133, 464, 596, 622 |
| BceAI | ACGGC | 1 cut(s) | 667 |
| BciT130I | CCWGG | 1 cut(s) | 634 |
| BclI | TGATCA | 1 cut(s) | 60 |
| BcoDI | GTCTC | 4 cut(s) | 23, 487, 707, 938 |
| BfaI | CTAG | 1 cut(s) | 915 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 270 |
| BglII | AGATCT | 1 cut(s) | 6 |
| BisI | GCNGC | 2 cut(s) | 680, 1122 |
| BlsI | GCNGC | 2 cut(s) | 681, 1123 |
| Bme1390I | CCNGG | 1 cut(s) | 634 |
| Bme18I | GGWCC | 2 cut(s) | 444, 672 |
| BmgT120I | GGNCC | 4 cut(s) | 182, 262, 444, 672 |
| BmiI | GGNNCC | 4 cut(s) | 274, 445, 522, 673 |
| BmrFI | CCNGG | 1 cut(s) | 634 |
| BmsI | GCATC | 1 cut(s) | 898 |
| BpmI | CTGGAG | 1 cut(s) | 894 |
| BpuEI | CTTGAG | 1 cut(s) | 233 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 208, 214, 238, 244, 560, 590 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 362, 530, 938, 1021 |
| Bse118I | RCCGGY | 1 cut(s) | 1021 |
| BseBI | CCWGG | 1 cut(s) | 634 |
| BseGI | GGATG | 4 cut(s) | 125, 475, 795, 807 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 362, 530, 938, 1021 |
| BseMII | CTCAG | 2 cut(s) | 393, 503 |
| BseRI | GAGGAG | 7 cut(s) | 127, 130, 581, 737, 752, 755, 820 |
| BseXI | GCAGC | 2 cut(s) | 666, 1108 |
| BshFI | GGCC | 3 cut(s) | 183, 264, 632 |
| BsiSI | CCGG | 2 cut(s) | 180, 1022 |
| BslFI | GGGAC | 4 cut(s) | 107, 685, 854, 997 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 362, 530, 938, 1021 |
| BsmAI | GTCTC | 4 cut(s) | 23, 487, 707, 938 |
| BsmBI | CGTCTC | 1 cut(s) | 23 |
| BsmFI | GGGAC | 4 cut(s) | 107, 685, 854, 997 |
| BsnI | GGCC | 3 cut(s) | 183, 264, 632 |
| Bsp143I | GATC | 2 cut(s) | 6, 60 |
| BspACI | CCGC | 3 cut(s) | 49, 387, 932 |
| BspANI | GGCC | 3 cut(s) | 183, 264, 632 |
| BspCNI | CTCAG | 2 cut(s) | 394, 504 |
| BspLI | GGNNCC | 4 cut(s) | 274, 445, 522, 673 |
| BsrFI | RCCGGY | 1 cut(s) | 1021 |
| BssAI | RCCGGY | 1 cut(s) | 1021 |
| BssMI | GATC | 2 cut(s) | 6, 60 |
| BssSI | CACGAG | 1 cut(s) | 525 |
| Bst2BI | CACGAG | 1 cut(s) | 525 |
| Bst2UI | CCWGG | 1 cut(s) | 634 |
| Bst4CI | ACNGT | 6 cut(s) | 121, 458, 593, 640, 694, 718 |
| Bst6I | CTCTTC | 6 cut(s) | 181, 740, 914, 987, 1022, 1035 |
| BstC8I | GCNNGC | 2 cut(s) | 852, 1005 |
| BstDEI | CTNAG | 3 cut(s) | 402, 512, 1131 |
| BstF5I | GGATG | 4 cut(s) | 125, 475, 795, 807 |
| BstKTI | GATC | 2 cut(s) | 9, 63 |
| BstMAI | GTCTC | 4 cut(s) | 23, 487, 707, 938 |
| BstMBI | GATC | 2 cut(s) | 6, 60 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 270, 629, 1118, 1127 |
| BstNI | CCWGG | 1 cut(s) | 634 |
| BstSCI | CCNGG | 1 cut(s) | 632 |
| BstV1I | GCAGC | 2 cut(s) | 666, 1108 |
| BstX2I | RGATCY | 1 cut(s) | 6 |
| BstYI | RGATCY | 1 cut(s) | 6 |
| BsuRI | GGCC | 3 cut(s) | 183, 264, 632 |
| BtsCI | GGATG | 4 cut(s) | 125, 475, 795, 807 |
| BtsI | GCAGTG | 1 cut(s) | 300 |
| BtsIMutI | CAGTG | 4 cut(s) | 56, 300, 374, 699 |
| Cac8I | GCNNGC | 2 cut(s) | 852, 1005 |
| CaiI | CAGNNNCTG | 1 cut(s) | 511 |
| Cfr10I | RCCGGY | 1 cut(s) | 1021 |
| Cfr13I | GGNCC | 4 cut(s) | 182, 262, 444, 672 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 964, 999 |
| CviAII | CATG | 1 cut(s) | 844 |
| DdeI | CTNAG | 3 cut(s) | 402, 512, 1131 |
| DpnI | GATC | 2 cut(s) | 8, 62 |
| DpnII | GATC | 2 cut(s) | 6, 60 |
| EaeI | YGGCCR | 1 cut(s) | 630 |
| Eam1104I | CTCTTC | 6 cut(s) | 181, 740, 914, 987, 1022, 1035 |
| EarI | CTCTTC | 6 cut(s) | 181, 740, 914, 987, 1022, 1035 |
| EciI | GGCGGA | 1 cut(s) | 376 |
| Eco47I | GGWCC | 2 cut(s) | 444, 672 |
| EcoO109I | RGGNCCY | 1 cut(s) | 444 |
| EcoRII | CCWGG | 1 cut(s) | 632 |
| Esp3I | CGTCTC | 1 cut(s) | 23 |
| FaeI | CATG | 1 cut(s) | 847 |
| FaiI | YATR | 4 cut(s) | 799, 845, 866, 1115 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 374, 406, 895, 927 |
| FaqI | GGGAC | 4 cut(s) | 107, 685, 854, 997 |
| FatI | CATG | 1 cut(s) | 843 |
| FbaI | TGATCA | 1 cut(s) | 60 |
| FblI | GTMKAC | 1 cut(s) | 1070 |
| Fnu4HI | GCNGC | 2 cut(s) | 680, 1122 |
| FokI | GGATG | 4 cut(s) | 112, 482, 802, 814 |
| Fsp4HI | GCNGC | 2 cut(s) | 680, 1122 |
| FspBI | CTAG | 1 cut(s) | 915 |
| GluI | GCNGC | 2 cut(s) | 680, 1122 |
| GsuI | CTGGAG | 1 cut(s) | 894 |
| HaeIII | GGCC | 3 cut(s) | 183, 264, 632 |
| HapII | CCGG | 2 cut(s) | 180, 1022 |
| Hin1II | CATG | 1 cut(s) | 847 |
| HinfI | GANTC | 5 cut(s) | 398, 437, 1010, 1058, 1094 |
| HpaII | CCGG | 2 cut(s) | 180, 1022 |
| HphI | GGTGA | 8 cut(s) | 73, 137, 440, 739, 764, 953, 965, 1036 |
| Hpy166II | GTNNAC | 1 cut(s) | 1071 |
| Hpy188I | TCNGA | 6 cut(s) | 65, 397, 403, 487, 1037, 1099 |
| Hpy188III | TCNNGA | 1 cut(s) | 873 |
| Hpy8I | GTNNAC | 1 cut(s) | 1071 |
| Hpy99I | CGWCG | 1 cut(s) | 499 |
| HpyAV | CCTTC | 7 cut(s) | 23, 195, 244, 482, 724, 778, 973 |
| HpyCH4III | ACNGT | 6 cut(s) | 121, 458, 593, 640, 694, 718 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 270, 629, 1118, 1127 |
| HpyF3I | CTNAG | 3 cut(s) | 402, 512, 1131 |
| Hsp92II | CATG | 1 cut(s) | 847 |
| Ksp22I | TGATCA | 1 cut(s) | 60 |
| Kzo9I | GATC | 2 cut(s) | 6, 60 |
| LmnI | GCTCC | 3 cut(s) | 278, 508, 520 |
| Lsp1109I | GCAGC | 2 cut(s) | 666, 1108 |
| LweI | GCATC | 1 cut(s) | 898 |
| MaeI | CTAG | 1 cut(s) | 915 |
| MaeIII | GTNAC | 2 cut(s) | 649, 927 |
| MalI | GATC | 2 cut(s) | 8, 62 |
| MboI | GATC | 2 cut(s) | 6, 60 |
| MboII | GAAGA | 9 cut(s) | 16, 99, 168, 598, 757, 931, 1004, 1039, 1052 |
| MflI | RGATCY | 1 cut(s) | 6 |
| MlsI | TGGCCA | 1 cut(s) | 632 |
| MluCI | AATT | 3 cut(s) | 359, 776, 1100 |
| MluNI | TGGCCA | 1 cut(s) | 632 |
| MlyI | GAGTC | 2 cut(s) | 392, 1019 |
| MmeI | TCCRAC | 1 cut(s) | 837 |
| Mox20I | TGGCCA | 1 cut(s) | 632 |
| MscI | TGGCCA | 1 cut(s) | 632 |
| MslI | CAYNNNNRTG | 2 cut(s) | 894, 1022 |
| Msp20I | TGGCCA | 1 cut(s) | 632 |
| MspI | CCGG | 2 cut(s) | 180, 1022 |
| MspR9I | CCNGG | 1 cut(s) | 634 |
| MvaI | CCWGG | 1 cut(s) | 634 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 270, 629, 1118, 1127 |
| NdeII | GATC | 2 cut(s) | 6, 60 |
| NlaIII | CATG | 1 cut(s) | 847 |
| NlaIV | GGNNCC | 4 cut(s) | 274, 445, 522, 673 |
| NmuCI | GTSAC | 1 cut(s) | 649 |
| OliI | CACNNNNGTG | 1 cut(s) | 1022 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 491 |
| PfeI | GAWTC | 3 cut(s) | 437, 1058, 1094 |
| PkrI | GCNGC | 2 cut(s) | 681, 1123 |
| PleI | GAGTC | 2 cut(s) | 392, 1018 |
| PpsI | GAGTC | 2 cut(s) | 392, 1018 |
| PpuMI | RGGWCCY | 1 cut(s) | 444 |
| Psp5II | RGGWCCY | 1 cut(s) | 444 |
| Psp6I | CCWGG | 1 cut(s) | 632 |
| PspGI | CCWGG | 1 cut(s) | 632 |
| PspN4I | GGNNCC | 4 cut(s) | 274, 445, 522, 673 |
| PspPI | GGNCC | 4 cut(s) | 182, 262, 444, 672 |
| PspPPI | RGGWCCY | 1 cut(s) | 444 |
| PstNI | CAGNNNCTG | 1 cut(s) | 511 |
| PsuI | RGATCY | 1 cut(s) | 6 |
| RseI | CAYNNNNRTG | 2 cut(s) | 894, 1022 |
| SatI | GCNGC | 2 cut(s) | 680, 1122 |
| Sau3AI | GATC | 2 cut(s) | 6, 60 |
| Sau96I | GGNCC | 4 cut(s) | 182, 262, 444, 672 |
| SchI | GAGTC | 2 cut(s) | 392, 1019 |
| ScrFI | CCNGG | 1 cut(s) | 634 |
| SfaNI | GCATC | 1 cut(s) | 898 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1021 |
| SinI | GGWCC | 2 cut(s) | 444, 672 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 894, 1022 |
| SmlI | CTYRAG | 1 cut(s) | 248 |
| SmoI | CTYRAG | 1 cut(s) | 248 |
| Sse9I | AATT | 3 cut(s) | 359, 776, 1100 |
| SsiI | CCGC | 3 cut(s) | 49, 387, 932 |
| SspMI | CTAG | 1 cut(s) | 915 |
| StyD4I | CCNGG | 1 cut(s) | 632 |
| TaaI | ACNGT | 6 cut(s) | 121, 458, 593, 640, 694, 718 |
| TasI | AATT | 3 cut(s) | 359, 776, 1100 |
| TfiI | GAWTC | 3 cut(s) | 437, 1058, 1094 |
| TscAI | CASTG | 4 cut(s) | 63, 307, 381, 699 |
| TseFI | GTSAC | 1 cut(s) | 649 |
| TseI | GCWGC | 2 cut(s) | 679, 1121 |
| Tsp45I | GTSAC | 1 cut(s) | 649 |
| TspDTI | ATGAA | 3 cut(s) | 17, 860, 881 |
| TspRI | CASTG | 4 cut(s) | 63, 307, 381, 699 |
| VpaK11BI | GGWCC | 2 cut(s) | 444, 672 |
| XmiI | GTMKAC | 1 cut(s) | 1070 |
| XspI | CTAG | 1 cut(s) | 915 |