Rh7BG236800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0016347
Physical Location & Seq
Reverse (-)
20826887 .. 20828668
1782 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG236800.1

Sequence Viewer

Length: 1170 bp
ATGAAGATCTCCCTTCGCCTTCAAGACGACCAAGACACCCAAAACTACCGCAACCCACTGATCAGAGCCAAAATCCCCATCACCATTTTCAACCAACCTTTCACTTCTTCAATAGCCACCGTCCCATCCACCAACTCCTCCTCTCACCTCTCCTTTTCTCTCTCCTCAAACTTCTCTTCCGGCCCTTCTCTCAAACTCTCTTACTCTCACACCTCCACCACCACTCCCTCTCCCTTCTCTCTCTCCCTCAAGTCTGGTTTGGGCCTCTTCGGCTCCCCAAACCACTCCCCTCTTGTTTTCACTGCCCACTTCTCTCTCTCCCACACGAACCCAGCTTTCTCTCTCCACATCAAGCCCCAATTCGGAAACTTTTCACTGAAAAAGTCCGCCTTTTCGGACTCTGAGCTTTCTGGGTCTTGCTCAAATGGTGATTTGGATTCTGGGTCCTGCTCAAACGGTGGTTTTGTGGATGGGTTTGCTGTCTCGGAAGGGTCGTCTTCTTGGCAGGAGCTGAGTTTGGAGCCTCGTGGGGGTAAAGATGTGAATGGGGGGATTGGGTCTGTGGAGGAGAGGCAGTTGGGTTTGAAGAACGGTGGGAAAGATGAGTTTTTGAATGGGATTGCTGTGATGGCCAGGACTGTTTTGCCTGTGACGAAAAGAGTGATGGTGAATATGCGGTGGGGGGTGAACTTTCCGGCGAAGTTGGGGACCAAGCTGCCGTATTTGACAGTGAATAAGATTGCTGTGGAGACAGTTGAGGAGGTGAAGGGAGAGGAGGAGAAGAGTGGTGAGAGTAGTGTAAAGGATTTGGAATTGTTGAAGGGGATGTGGTTATGGGTGAGGAGGGATTTGGAGGTTTTGGACAAGGAGAATAGGGATATGAAGCAGAGGTTGGAGGATATGAAGTCTGGAGTTTCTGGGAGGCATTTTCGTGGGGAAAGTGATGCTTCTAGGAAGAGAGTGTTGCCGCCGTTGGGTGAGACTTCTGGTGAGTTTGAGAGGTGGAGGAACAAGAAGGGTGGGAGAGAAGAGAATGTGCGAACAGAGTCCCACGCGCCGGTGAAGAGTGTCAGAGAAGAGAGTATTCGGGTGGATTCGAAGAAGTCTACCAATCAGGCAAGTGATTTGGAATCTGAATTGGAGAGAGCTATAAAGGCTGCTACGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

389

Amino Acids

42.6

Weight (kDa)

8.87

Isoelectric Point (pI)

40.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g21440
malus_domestica MD06G1029200.v1.1
prunus_persica Prupe.5G042700_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0208871
rosa_laevigata RLG00000003188
rosa_multiflora Rmu_sc0000532.1_g000005 Rmu_sc0001482.1_g000003 Rmu_sc0016359.1_g000001
rosa_roxburghii Rroxscaffold_3G00250090
rosa_rugosa Rorug07G0107000
rosa_samantha Rh7AG242000 Rh7BG236800 Rh7CG256900 Rh7DG247900
rosa_wichuraiana Rw7G020490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1106
AccII CGCG 1 cut(s) 1055
AciI CCGC 4 cut(s) 49, 387, 676, 968
AcoI YGGCCR 1 cut(s) 630
AfiI CCNNNNNNNGG 4 cut(s) 362, 530, 974, 1057
AgsI TTSAA 6 cut(s) 23, 91, 111, 586, 613, 820
AjnI CCWGG 1 cut(s) 632
AjuI GAANNNNNNNTTGG 2 cut(s) 875, 907
AluBI AGCT 5 cut(s) 335, 406, 511, 715, 1148
AluI AGCT 5 cut(s) 335, 406, 511, 715, 1148
Alw26I GTCTC 3 cut(s) 487, 743, 974
AlwNI CAGNNNCTG 1 cut(s) 511
AoxI GGCC 3 cut(s) 181, 262, 630
ApeKI GCWGC 2 cut(s) 715, 1157
Asp700I GAANNNNTTC 1 cut(s) 370
AspLEI GCGC 1 cut(s) 1057
AspS9I GGNCC 4 cut(s) 182, 262, 444, 708
AsuII TTCGAA 1 cut(s) 1097
AvaII GGWCC 2 cut(s) 444, 708
BalI TGGCCA 1 cut(s) 632
BauI CACGAG 1 cut(s) 525
BbsI GAAGAC 1 cut(s) 489
BbvI GCAGC 2 cut(s) 702, 1144
BccI CCATC 5 cut(s) 86, 133, 464, 622, 658
BceAI ACGGC 2 cut(s) 703, 955
BciT130I CCWGG 1 cut(s) 634
BclI TGATCA 1 cut(s) 60
BcoDI GTCTC 3 cut(s) 487, 743, 974
BfaI CTAG 1 cut(s) 951
BglI GCCNNNNNGGC 1 cut(s) 270
BglII AGATCT 1 cut(s) 6
BisI GCNGC 3 cut(s) 716, 968, 1158
BlsI GCNGC 3 cut(s) 717, 969, 1159
Bme1390I CCNGG 1 cut(s) 634
Bme18I GGWCC 2 cut(s) 444, 708
BmgT120I GGNCC 4 cut(s) 182, 262, 444, 708
BmiI GGNNCC 4 cut(s) 274, 445, 522, 709
BmrFI CCNGG 1 cut(s) 634
BmsI GCATC 1 cut(s) 934
BpiI GAAGAC 1 cut(s) 489
BpmI CTGGAG 1 cut(s) 930
Bpu14I TTCGAA 1 cut(s) 1097
BpuEI CTTGAG 1 cut(s) 233
BsaXI ACNNNNNCTCC 6 cut(s) 208, 214, 238, 244, 560, 590
Bsc4I CCNNNNNNNGG 4 cut(s) 362, 530, 974, 1057
Bse118I RCCGGY 1 cut(s) 1057
BseBI CCWGG 1 cut(s) 634
BseGI GGATG 3 cut(s) 125, 475, 831
BseLI CCNNNNNNNGG 4 cut(s) 362, 530, 974, 1057
BseMII CTCAG 2 cut(s) 393, 503
BseRI GAGGAG 8 cut(s) 127, 130, 154, 581, 773, 788, 791, 856
BseXI GCAGC 2 cut(s) 702, 1144
BseYI CCCAGC 1 cut(s) 331
Bsh1236I CGCG 1 cut(s) 1055
BshFI GGCC 3 cut(s) 183, 264, 632
BsiSI CCGG 3 cut(s) 180, 695, 1058
BslFI GGGAC 3 cut(s) 107, 721, 1033
BslI CCNNNNNNNGG 4 cut(s) 362, 530, 974, 1057
BsmAI GTCTC 3 cut(s) 487, 743, 974
BsmFI GGGAC 3 cut(s) 107, 721, 1033
BsnI GGCC 3 cut(s) 183, 264, 632
Bsp119I TTCGAA 1 cut(s) 1097
Bsp143I GATC 2 cut(s) 6, 60
BspACI CCGC 4 cut(s) 49, 387, 676, 968
BspANI GGCC 3 cut(s) 183, 264, 632
BspCNI CTCAG 2 cut(s) 394, 504
BspFNI CGCG 1 cut(s) 1055
BspLI GGNNCC 4 cut(s) 274, 445, 522, 709
BspT104I TTCGAA 1 cut(s) 1097
BsrFI RCCGGY 1 cut(s) 1057
BssAI RCCGGY 1 cut(s) 1057
BssMI GATC 2 cut(s) 6, 60
BssSI CACGAG 1 cut(s) 525
Bst2BI CACGAG 1 cut(s) 525
Bst2UI CCWGG 1 cut(s) 634
Bst4CI ACNGT 6 cut(s) 121, 458, 593, 640, 730, 754
Bst6I CTCTTC 7 cut(s) 181, 272, 776, 950, 1023, 1058, 1071
BstBI TTCGAA 1 cut(s) 1097
BstDEI CTNAG 3 cut(s) 402, 512, 1167
BstF5I GGATG 3 cut(s) 125, 475, 831
BstFNI CGCG 1 cut(s) 1055
BstHHI GCGC 1 cut(s) 1057
BstKTI GATC 2 cut(s) 9, 63
BstMAI GTCTC 3 cut(s) 487, 743, 974
BstMBI GATC 2 cut(s) 6, 60
BstMWI GCNNNNNNNGC 4 cut(s) 270, 629, 1154, 1163
BstNI CCWGG 1 cut(s) 634
BstSCI CCNGG 1 cut(s) 632
BstUI CGCG 1 cut(s) 1055
BstV1I GCAGC 2 cut(s) 702, 1144
BstV2I GAAGAC 1 cut(s) 489
BstX2I RGATCY 1 cut(s) 6
BstYI RGATCY 1 cut(s) 6
BsuRI GGCC 3 cut(s) 183, 264, 632
BtsCI GGATG 3 cut(s) 125, 475, 831
BtsI GCAGTG 1 cut(s) 300
BtsIMutI CAGTG 4 cut(s) 56, 300, 374, 735
CaiI CAGNNNCTG 1 cut(s) 511
CfoI GCGC 1 cut(s) 1057
Cfr10I RCCGGY 1 cut(s) 1057
Cfr13I GGNCC 4 cut(s) 182, 262, 444, 708
CspCI CAANNNNNGTGG 2 cut(s) 1000, 1035
DdeI CTNAG 3 cut(s) 402, 512, 1167
DpnI GATC 2 cut(s) 8, 62
DpnII GATC 2 cut(s) 6, 60
EaeI YGGCCR 1 cut(s) 630
Eam1104I CTCTTC 7 cut(s) 181, 272, 776, 950, 1023, 1058, 1071
EarI CTCTTC 7 cut(s) 181, 272, 776, 950, 1023, 1058, 1071
EciI GGCGGA 1 cut(s) 376
Eco47I GGWCC 2 cut(s) 444, 708
EcoO109I RGGNCCY 1 cut(s) 444
EcoRII CCWGG 1 cut(s) 632
FaiI YATR 5 cut(s) 674, 835, 881, 902, 1151
FalI AAGNNNNNCTT 4 cut(s) 374, 406, 931, 963
FaqI GGGAC 3 cut(s) 107, 721, 1033
FbaI TGATCA 1 cut(s) 60
FblI GTMKAC 1 cut(s) 1106
Fnu4HI GCNGC 3 cut(s) 716, 968, 1158
FokI GGATG 3 cut(s) 112, 482, 838
Fsp4HI GCNGC 3 cut(s) 716, 968, 1158
FspBI CTAG 1 cut(s) 951
GlaI GCGC 1 cut(s) 1056
GluI GCNGC 3 cut(s) 716, 968, 1158
GsaI CCCAGC 1 cut(s) 335
GsuI CTGGAG 1 cut(s) 930
HaeIII GGCC 3 cut(s) 183, 264, 632
HapII CCGG 3 cut(s) 180, 695, 1058
HhaI GCGC 1 cut(s) 1057
Hin6I GCGC 1 cut(s) 1055
HinP1I GCGC 1 cut(s) 1055
HinfI GANTC 5 cut(s) 398, 437, 1046, 1094, 1130
HpaII CCGG 3 cut(s) 180, 695, 1058
Hpy166II GTNNAC 2 cut(s) 688, 1107
Hpy188I TCNGA 7 cut(s) 65, 365, 397, 403, 487, 1073, 1135
Hpy188III TCNNGA 2 cut(s) 23, 909
Hpy8I GTNNAC 2 cut(s) 688, 1107
HpyAV CCTTC 8 cut(s) 23, 29, 195, 244, 482, 760, 814, 1009
HpyCH4III ACNGT 6 cut(s) 121, 458, 593, 640, 730, 754
HpyF10VI GCNNNNNNNGC 4 cut(s) 270, 629, 1154, 1163
HpyF3I CTNAG 3 cut(s) 402, 512, 1167
HspAI GCGC 1 cut(s) 1055
Ksp22I TGATCA 1 cut(s) 60
Kzo9I GATC 2 cut(s) 6, 60
LmnI GCTCC 3 cut(s) 278, 508, 520
Lsp1109I GCAGC 2 cut(s) 702, 1144
LweI GCATC 1 cut(s) 934
MaeI CTAG 1 cut(s) 951
MaeIII GTNAC 1 cut(s) 649
MalI GATC 2 cut(s) 8, 62
MboI GATC 2 cut(s) 6, 60
MflI RGATCY 1 cut(s) 6
MlsI TGGCCA 1 cut(s) 632
MluCI AATT 3 cut(s) 359, 812, 1136
MluNI TGGCCA 1 cut(s) 632
MlyI GAGTC 2 cut(s) 392, 1055
MmeI TCCRAC 1 cut(s) 873
Mox20I TGGCCA 1 cut(s) 632
MroXI GAANNNNTTC 1 cut(s) 370
MscI TGGCCA 1 cut(s) 632
MslI CAYNNNNRTG 1 cut(s) 930
Msp20I TGGCCA 1 cut(s) 632
MspI CCGG 3 cut(s) 180, 695, 1058
MspR9I CCNGG 1 cut(s) 634
MvaI CCWGG 1 cut(s) 634
MvnI CGCG 1 cut(s) 1055
MwoI GCNNNNNNNGC 4 cut(s) 270, 629, 1154, 1163
NdeII GATC 2 cut(s) 6, 60
NlaIV GGNNCC 4 cut(s) 274, 445, 522, 709
NmuCI GTSAC 1 cut(s) 649
NspV TTCGAA 1 cut(s) 1097
PcsI WCGNNNNNNNCGW 1 cut(s) 491
PdmI GAANNNNTTC 1 cut(s) 370
PfeI GAWTC 3 cut(s) 437, 1094, 1130
PkrI GCNGC 3 cut(s) 717, 969, 1159
PleI GAGTC 2 cut(s) 392, 1054
PpsI GAGTC 2 cut(s) 392, 1054
PpuMI RGGWCCY 1 cut(s) 444
Psp5II RGGWCCY 1 cut(s) 444
Psp6I CCWGG 1 cut(s) 632
PspFI CCCAGC 1 cut(s) 331
PspGI CCWGG 1 cut(s) 632
PspN4I GGNNCC 4 cut(s) 274, 445, 522, 709
PspPI GGNCC 4 cut(s) 182, 262, 444, 708
PspPPI RGGWCCY 1 cut(s) 444
PstNI CAGNNNCTG 1 cut(s) 511
PsuI RGATCY 1 cut(s) 6
RseI CAYNNNNRTG 1 cut(s) 930
SatI GCNGC 3 cut(s) 716, 968, 1158
Sau3AI GATC 2 cut(s) 6, 60
Sau96I GGNCC 4 cut(s) 182, 262, 444, 708
SchI GAGTC 2 cut(s) 392, 1055
ScrFI CCNGG 1 cut(s) 634
SfaNI GCATC 1 cut(s) 934
SfuI TTCGAA 1 cut(s) 1097
SgrAI CRCCGGYG 1 cut(s) 1057
SinI GGWCC 2 cut(s) 444, 708
SmiMI CAYNNNNRTG 1 cut(s) 930
SmlI CTYRAG 1 cut(s) 248
SmoI CTYRAG 1 cut(s) 248
Sse9I AATT 3 cut(s) 359, 812, 1136
SsiI CCGC 4 cut(s) 49, 387, 676, 968
SspMI CTAG 1 cut(s) 951
StyD4I CCNGG 1 cut(s) 632
TaaI ACNGT 6 cut(s) 121, 458, 593, 640, 730, 754
TaqI TCGA 1 cut(s) 1097
TasI AATT 3 cut(s) 359, 812, 1136
TauI GCSGC 1 cut(s) 970
TfiI GAWTC 3 cut(s) 437, 1094, 1130
TscAI CASTG 4 cut(s) 63, 307, 381, 735
TseFI GTSAC 1 cut(s) 649
TseI GCWGC 2 cut(s) 715, 1157
Tsp45I GTSAC 1 cut(s) 649
TspDTI ATGAA 3 cut(s) 17, 896, 917
TspRI CASTG 4 cut(s) 63, 307, 381, 735
VpaK11BI GGWCC 2 cut(s) 444, 708
XmiI GTMKAC 1 cut(s) 1106
XmnI GAANNNNTTC 1 cut(s) 370
XspI CTAG 1 cut(s) 951
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.