Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0016347

Physical Location & Seq

Genomic Coordinates Reverse (-)

25596511 .. 25613517

Gene Structure 17007 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG247900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGAAGATCTCCCTTCGTCTCCAAGACGACCAAGATACCCAACACTACTGCAACCCACTGATCAGAGCCAAAATCCCCATCACCATTTTCAACCAGCCTTTCACTTCTTCAATAGCCACCGTCCCATCCACCAACTCCTCCTCTCACCTCTCCTTTTCTCTCTCCTCAAACTTCTCTTCCGGCCCTTCTCTCAAACTCTCTTACTCTCACACCTCCACCACCACCGCTTCTCCCTTCTCTCTCTCCCTCAAGTCTGGGTCGTCTTCTTGGCAGGAGCTGAGTTTGGAGCCTCGTGGGGGTAAAGATGTAAATGGGGGGATTGGGTCTGTGGAGGAGAGGCAGTTGGGTTTGAAGAACGGTGGGAAAGATGGGTTTTTGAATGGGATTGCTGTGATGGCCAGGACTGTTTTGCCTGTGACGAAAAGAGTTATGGTGAATATGCGGTGGGGGGTGAACTTTCCGGCGAAGTTGGGGACCAAGCTGCCGTATTTGACAGTGAATAAGATTGCTGTGGAGACAGTTGAGGAGGTGAAGGGAGAGGAGGAAAAGAGTGGTGAGAGTAGTGTAAAGGATTTGGAATTGTTGAAGGGGATGTGGTTATGGATGAGGAGGGATTTGGAGGTTTTGGACAAGGAGAATAGGGATATGAAGCAGAGGTTGGAGGATATGAAGTCTGGAGTTTCTGGGAGGCATTTTCGTGGGGAAAGTGATGCTTCGAGGAAGATAGTGTTGCCGCCATTGGGTGAGACTTCTGGTGAGTTTGAGAGGCTGCTACGGCTTAGCAAGGTTTGGCATATCAACGCTCATTTTACTGCTTTGTTTTCAAATGTATATAAGACCCTAGCTTCAGTTTTAGGCAAGTTATTGCTATCTGCTCGGGGATTAAGTTACTATGTAGAGAAGAATGGCGAGCTCAACCTCCGGCGGAAGAAGCAGCAGCAGAGAGAATACGGCAAAAAACATGGTCTCCGATCAGATTTCTCAGGCCGTACTATCCACTTCCAACCTCCTCCACCTCATGCAGCAGTCCTCGCCTTCCCAGGTATCACCTCCCTACTCTTTATTCCTCTTCTAAATTCCTCTGTCTCAATATGTATGGAAGATTCAATGGAAAGTGATCAAATTGTCTTTTTTTTTTTTTTTTTTTTAATATCAAACCAATTTGCAAACTGGGCTTTTATCGGATTTGGGAATGGTGCATACATTGCAGAGAATCTTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

407

Amino Acids

45.43

Weight (kDa)

9.43

Isoelectric Point (pI)

35.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016347)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g21440
malus_domestica	MD06G1029200.v1.1
prunus_persica	Prupe.5G042700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0208871
rosa_laevigata	RLG00000003188
rosa_multiflora	Rmu_sc0000532.1_g000005 Rmu_sc0001482.1_g000003 Rmu_sc0016359.1_g000001
rosa_roxburghii	Rroxscaffold_3G00250090
rosa_rugosa	Rorug07G0107000
rosa_samantha	Rh7AG242000 Rh7BG236800 Rh7CG256900 Rh7DG247900
rosa_wichuraiana	Rw7G020490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	225, 442, 734, 925
AcoI	YGGCCR	1 cut(s)	396
AcsI	RAATTY	1 cut(s)	1075
AcuI	CTGAAG	1 cut(s)	831
AfaI	GTAC	1 cut(s)	991
AfiI	CCNNNNNNNGG	2 cut(s)	296, 740
AgsI	TTSAA	7 cut(s)	91, 111, 352, 379, 586, 825, 1107
AjnI	CCWGG	2 cut(s)	398, 1039
AjuI	GAANNNNNNNTTGG	2 cut(s)	641, 673
AluBI	AGCT	4 cut(s)	277, 481, 845, 913
AluI	AGCT	4 cut(s)	277, 481, 845, 913
Alw21I	GWGCWC	1 cut(s)	915
Alw26I	GTCTC	5 cut(s)	23, 509, 740, 971, 1090
AlwNI	CAGNNNCTG	1 cut(s)	277
Ama87I	CYCGRG	1 cut(s)	876
AoxI	GGCC	3 cut(s)	181, 396, 985
ApeKI	GCWGC	5 cut(s)	481, 769, 934, 937, 1022
ApoI	RAATTY	1 cut(s)	1075
AspS9I	GGNCC	2 cut(s)	182, 474
AsuHPI	GGTGA	9 cut(s)	73, 137, 445, 463, 541, 566, 755, 767, 1039
AvaI	CYCGRG	1 cut(s)	876
AvaII	GGWCC	1 cut(s)	474
BalI	TGGCCA	1 cut(s)	398
BanII	GRGCYC	1 cut(s)	915
BauI	CACGAG	1 cut(s)	291
BbsI	GAAGAC	1 cut(s)	255
Bbv12I	GWGCWC	1 cut(s)	915
BbvI	GCAGC	5 cut(s)	468, 756, 946, 949, 1034
BccI	CCATC	4 cut(s)	86, 133, 362, 388
BceAI	ACGGC	4 cut(s)	469, 791, 967, 972
BciT130I	CCWGG	2 cut(s)	400, 1041
BclI	TGATCA	2 cut(s)	60, 1117
BcoDI	GTCTC	5 cut(s)	23, 509, 740, 971, 1090
BfaI	CTAG	1 cut(s)	842
BglII	AGATCT	1 cut(s)	6
BisI	GCNGC	6 cut(s)	482, 734, 770, 935, 938, 1023
BlpI	GCTNAGC	1 cut(s)	779
BlsI	GCNGC	6 cut(s)	483, 735, 771, 936, 939, 1024
Bme1390I	CCNGG	2 cut(s)	400, 1041
Bme18I	GGWCC	1 cut(s)	474
BmeT110I	CYCGRG	1 cut(s)	876
BmgT120I	GGNCC	2 cut(s)	182, 474
BmiI	GGNNCC	2 cut(s)	288, 475
BmrFI	CCNGG	2 cut(s)	400, 1041
BmrI	ACTGGG	1 cut(s)	1180
BmsI	GCATC	1 cut(s)	700
BmuI	ACTGGG	1 cut(s)	1180
BpiI	GAAGAC	1 cut(s)	255
BpmI	CTGGAG	1 cut(s)	696
Bpu1102I	GCTNAGC	1 cut(s)	779
BpuEI	CTTGAG	1 cut(s)	233
BsaI	GGTCTC	1 cut(s)	971
BsaJI	CCNNGG	1 cut(s)	1039
BsaXI	ACNNNNNCTCC	6 cut(s)	214, 244, 326, 356, 951, 981
Bsc4I	CCNNNNNNNGG	2 cut(s)	296, 740
Bse1I	ACTGG	1 cut(s)	1175
Bse3DI	GCAATG	1 cut(s)	1203
BseBI	CCWGG	2 cut(s)	400, 1041
BseDI	CCNNGG	1 cut(s)	1039
BseGI	GGATG	3 cut(s)	125, 597, 609
BseLI	CCNNNNNNNGG	2 cut(s)	296, 740
BseMI	GCAATG	1 cut(s)	1203
BseMII	CTCAG	2 cut(s)	269, 996
BseNI	ACTGG	1 cut(s)	1175
BseRI	GAGGAG	8 cut(s)	127, 130, 154, 347, 539, 554, 622, 999
BseXI	GCAGC	5 cut(s)	468, 756, 946, 949, 1034
BshFI	GGCC	3 cut(s)	183, 398, 987
BsiHKAI	GWGCWC	1 cut(s)	915
BsiHKCI	CYCGRG	1 cut(s)	876
BsiSI	CCGG	3 cut(s)	180, 461, 922
BslFI	GGGAC	2 cut(s)	107, 487
BslI	CCNNNNNNNGG	2 cut(s)	296, 740
BsmAI	GTCTC	5 cut(s)	23, 509, 740, 971, 1090
BsmBI	CGTCTC	1 cut(s)	23
BsmFI	GGGAC	2 cut(s)	107, 487
BsnI	GGCC	3 cut(s)	183, 398, 987
Bso31I	GGTCTC	1 cut(s)	971
BsoBI	CYCGRG	1 cut(s)	876
Bsp1286I	GDGCHC	1 cut(s)	915
Bsp143I	GATC	4 cut(s)	6, 60, 971, 1117
Bsp1720I	GCTNAGC	1 cut(s)	779
BspACI	CCGC	4 cut(s)	225, 442, 734, 925
BspANI	GGCC	3 cut(s)	183, 398, 987
BspCNI	CTCAG	2 cut(s)	270, 995
BspLI	GGNNCC	2 cut(s)	288, 475
BspTNI	GGTCTC	1 cut(s)	971
BsrDI	GCAATG	1 cut(s)	1203
BsrI	ACTGG	1 cut(s)	1175
BssECI	CCNNGG	1 cut(s)	1039
BssMI	GATC	4 cut(s)	6, 60, 971, 1117
BssSI	CACGAG	1 cut(s)	291
Bst2BI	CACGAG	1 cut(s)	291
Bst2UI	CCWGG	2 cut(s)	400, 1041
Bst4CI	ACNGT	5 cut(s)	121, 359, 406, 496, 520
Bst6I	CTCTTC	2 cut(s)	181, 1074
BstAPI	GCANNNNNTGC	1 cut(s)	1205
BstC8I	GCNNGC	1 cut(s)	911
BstDEI	CTNAG	3 cut(s)	278, 779, 982
BstF5I	GGATG	3 cut(s)	125, 597, 609
BstKTI	GATC	4 cut(s)	9, 63, 974, 1120
BstMAI	GTCTC	5 cut(s)	23, 509, 740, 971, 1090
BstMBI	GATC	4 cut(s)	6, 60, 971, 1117
BstMWI	GCNNNNNNNGC	6 cut(s)	395, 775, 931, 1031, 1172, 1205
BstNI	CCWGG	2 cut(s)	400, 1041
BstSCI	CCNGG	2 cut(s)	398, 1039
BstV1I	GCAGC	5 cut(s)	468, 756, 946, 949, 1034
BstV2I	GAAGAC	1 cut(s)	255
BstX2I	RGATCY	1 cut(s)	6
BstYI	RGATCY	1 cut(s)	6
BsuRI	GGCC	3 cut(s)	183, 398, 987
BtsCI	GGATG	3 cut(s)	125, 597, 609
BtsIMutI	CAGTG	2 cut(s)	56, 501
Cac8I	GCNNGC	1 cut(s)	911
CaiI	CAGNNNCTG	1 cut(s)	277
Cfr13I	GGNCC	2 cut(s)	182, 474
Csp6I	GTAC	1 cut(s)	990
CviAII	CATG	2 cut(s)	962, 1019
CviQI	GTAC	1 cut(s)	990
DdeI	CTNAG	3 cut(s)	278, 779, 982
DpnI	GATC	4 cut(s)	8, 62, 973, 1119
DpnII	GATC	4 cut(s)	6, 60, 971, 1117
EaeI	YGGCCR	1 cut(s)	396
Eam1104I	CTCTTC	2 cut(s)	181, 1074
EarI	CTCTTC	2 cut(s)	181, 1074
EciI	GGCGGA	1 cut(s)	940
Ecl136II	GAGCTC	1 cut(s)	913
Eco24I	GRGCYC	1 cut(s)	915
Eco31I	GGTCTC	1 cut(s)	971
Eco47I	GGWCC	1 cut(s)	474
Eco53kI	GAGCTC	1 cut(s)	913
Eco57I	CTGAAG	1 cut(s)	831
Eco88I	CYCGRG	1 cut(s)	876
EcoICRI	GAGCTC	1 cut(s)	913
EcoRII	CCWGG	2 cut(s)	398, 1039
EcoT38I	GRGCYC	1 cut(s)	915
Esp3I	CGTCTC	1 cut(s)	23
FaeI	CATG	2 cut(s)	965, 1022
FalI	AAGNNNNNCTT	2 cut(s)	697, 729
FaqI	GGGAC	2 cut(s)	107, 487
FatI	CATG	2 cut(s)	961, 1018
FbaI	TGATCA	2 cut(s)	60, 1117
Fnu4HI	GCNGC	6 cut(s)	482, 734, 770, 935, 938, 1023
FokI	GGATG	3 cut(s)	112, 604, 616
FriOI	GRGCYC	1 cut(s)	915
Fsp4HI	GCNGC	6 cut(s)	482, 734, 770, 935, 938, 1023
FspBI	CTAG	1 cut(s)	842
GluI	GCNGC	6 cut(s)	482, 734, 770, 935, 938, 1023
GsuI	CTGGAG	1 cut(s)	696
HaeIII	GGCC	3 cut(s)	183, 398, 987
HapII	CCGG	3 cut(s)	180, 461, 922
Hin1II	CATG	2 cut(s)	965, 1022
HinfI	GANTC	2 cut(s)	1103, 1213
HpaII	CCGG	3 cut(s)	180, 461, 922
HphI	GGTGA	9 cut(s)	73, 137, 445, 463, 541, 566, 755, 767, 1039
Hpy166II	GTNNAC	1 cut(s)	454
Hpy188I	TCNGA	4 cut(s)	65, 971, 976, 1184
Hpy188III	TCNNGA	1 cut(s)	675
Hpy8I	GTNNAC	1 cut(s)	454
HpyAV	CCTTC	6 cut(s)	23, 195, 244, 526, 580, 1045
HpyCH4III	ACNGT	5 cut(s)	121, 359, 406, 496, 520
HpyCH4V	TGCA	5 cut(s)	51, 1022, 1166, 1199, 1208
HpyF10VI	GCNNNNNNNGC	6 cut(s)	395, 775, 931, 1031, 1172, 1205
HpyF3I	CTNAG	3 cut(s)	278, 779, 982
Hsp92II	CATG	2 cut(s)	965, 1022
Ksp22I	TGATCA	2 cut(s)	60, 1117
Kzo9I	GATC	4 cut(s)	6, 60, 971, 1117
LmnI	GCTCC	2 cut(s)	274, 286
Lsp1109I	GCAGC	5 cut(s)	468, 756, 946, 949, 1034
LweI	GCATC	1 cut(s)	700
MaeI	CTAG	1 cut(s)	842
MaeIII	GTNAC	2 cut(s)	415, 887
MalI	GATC	4 cut(s)	8, 62, 973, 1119
MboI	GATC	4 cut(s)	6, 60, 971, 1117
MflI	RGATCY	1 cut(s)	6
MhlI	GDGCHC	1 cut(s)	915
MlsI	TGGCCA	1 cut(s)	398
MluCI	AATT	4 cut(s)	578, 1075, 1122, 1160
MluNI	TGGCCA	1 cut(s)	398
MmeI	TCCRAC	2 cut(s)	639, 1027
Mox20I	TGGCCA	1 cut(s)	398
MscI	TGGCCA	1 cut(s)	398
MseI	TTAA	3 cut(s)	884, 1148, 1222
MslI	CAYNNNNRTG	1 cut(s)	696
Msp20I	TGGCCA	1 cut(s)	398
MspI	CCGG	3 cut(s)	180, 461, 922
MspR9I	CCNGG	2 cut(s)	400, 1041
MvaI	CCWGG	2 cut(s)	400, 1041
MwoI	GCNNNNNNNGC	6 cut(s)	395, 775, 931, 1031, 1172, 1205
NdeII	GATC	4 cut(s)	6, 60, 971, 1117
NlaIII	CATG	2 cut(s)	965, 1022
NlaIV	GGNNCC	2 cut(s)	288, 475
NmuCI	GTSAC	1 cut(s)	415
PfeI	GAWTC	2 cut(s)	1103, 1213
PkrI	GCNGC	6 cut(s)	483, 735, 771, 936, 939, 1024
Psp124BI	GAGCTC	1 cut(s)	915
Psp6I	CCWGG	2 cut(s)	398, 1039
PspGI	CCWGG	2 cut(s)	398, 1039
PspN4I	GGNNCC	2 cut(s)	288, 475
PspPI	GGNCC	2 cut(s)	182, 474
PstNI	CAGNNNCTG	1 cut(s)	277
PsuI	RGATCY	1 cut(s)	6
RsaI	GTAC	1 cut(s)	991
RsaNI	GTAC	1 cut(s)	990
RseI	CAYNNNNRTG	1 cut(s)	696
SacI	GAGCTC	1 cut(s)	915
SaqAI	TTAA	3 cut(s)	884, 1148, 1222
SatI	GCNGC	6 cut(s)	482, 734, 770, 935, 938, 1023
Sau3AI	GATC	4 cut(s)	6, 60, 971, 1117
Sau96I	GGNCC	2 cut(s)	182, 474
ScrFI	CCNGG	2 cut(s)	400, 1041
SduI	GDGCHC	1 cut(s)	915
SfaNI	GCATC	1 cut(s)	700
SinI	GGWCC	1 cut(s)	474
SmiMI	CAYNNNNRTG	1 cut(s)	696
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
Sse9I	AATT	4 cut(s)	578, 1075, 1122, 1160
SsiI	CCGC	4 cut(s)	225, 442, 734, 925
SspMI	CTAG	1 cut(s)	842
SstI	GAGCTC	1 cut(s)	915
StyD4I	CCNGG	2 cut(s)	398, 1039
TaaI	ACNGT	5 cut(s)	121, 359, 406, 496, 520
TaqI	TCGA	1 cut(s)	716
TasI	AATT	4 cut(s)	578, 1075, 1122, 1160
TauI	GCSGC	1 cut(s)	736
TfiI	GAWTC	2 cut(s)	1103, 1213
Tru1I	TTAA	3 cut(s)	884, 1148, 1222
Tru9I	TTAA	3 cut(s)	884, 1148, 1222
TscAI	CASTG	2 cut(s)	63, 501
TseFI	GTSAC	1 cut(s)	415
TseI	GCWGC	5 cut(s)	481, 769, 934, 937, 1022
Tsp45I	GTSAC	1 cut(s)	415
TspDTI	ATGAA	3 cut(s)	17, 662, 683
TspRI	CASTG	2 cut(s)	63, 501
VpaK11BI	GGWCC	1 cut(s)	474
XapI	RAATTY	1 cut(s)	1075
XspI	CTAG	1 cut(s)	842

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.