Prupe.5G053400_v2.0.a1

Decapping nuclease DXO homolog

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Forward (+)
5722061 .. 5728056
5996 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G053400.1

Sequence Viewer

Length: 1578 bp
ATGGATTTTTCAAAGCAGCACGAAGATATCTTCGGACAGGACTATGATGACGACGACCATAATACCCAAGATGCGGCCCATTCATCCTCACCATCCTCCTCCTCATCATCGTCGTCTTCATCATCTTCATCGTCGTCGGCTTCTTCTTCATCCAACGGCAGCGATAGAGGCGAGTCCAGCAGTGGCAATAGCCCAAGCGCCAGCAGTGCTGGTGGTGGTGGTGGTGAAGAAGAGGAAGAGAATGGTGACGAGGCTGATAATTCAAACGCCACCAACAGCAATGAGTTTAACAATAGGGGTTATTTTGGGGACGGAGATAAAGATCTGTTCGGGTCTGATAATGAAGATTTCTGTAAAACCCCTGCAACTAGTCCTTTCCTTATTCCTGTATTGCCTGTCATACGCAATACTAATAATCAGGGTAGAGGAAATTTTGGGCGCGGTCGTTGGCAATCAGGGCATCCAAATGACAGAGGTGCAGGCATCCTTCCCCGACCCGGACCTTATCCACAGAGGCATAATTACGGTTATGGTTCAAAGTTCTCAAATGGTCATCGTGATGAACGATTTGTTTCGGATCTAAGACTTACAAAGAGTGAAGAAACACTATCGAGAAAGATAATTGCATTTCAGGAACCCTGTGAACTTGCTTGCTATAGTCGGGTAGAAGGTGGAGATGTCACCTTTGATGATACCAGCTTGAGGCTTTTCAAACGTCTTATTACTGAAGACATTGGAGCCGATCTCAATGATGGTTATGATACTTTTATTGGAAAGAAAGATTTGGGCTCTCAAGGTTTTGGTGACCTTCTTGCCTGCATAAGAGATAAGAATATTCCACTTCAAAATATTCACTTTGTGACTTATCGTAACAATCTTAACAAGATATTGGCCACTGCTTATATTCGACACGAGCCTTGGGAAATGGGAGTGCATAAAAGGAATGGGGTTGTCTATCTTGATGTGCATAAACTACCTGAAAGGCCACAAAGTGAATTGGATCGTCGAAGGTGTTACTGGGGTTATTGTTTTGAGAGTCTTGCCACTGAAGATCCAGGGAGAGGTGACGGAGGGATACATCATGTTGATGCCAATGTTGAATTTTGTTCTGTGATCAAAACAAAATTAGGGGCCCATCGTATTCTAATGGGTGCTGAAATGGATTGTTGTGATTCAACTGATGATGGGAGGAGGTTTTATGTGGAGCTAAAGACAAGTCGCGAGTTGGATTATCATACAGAGGAAAGATTTGAGAGAGAGAAGCTCCTCAAGTTTTGGATACAATCATTCTTAGCGGGTGTTCCCTATATTGTCATTGGATTTAGGGATGATGCCGGTCGACTTGTCCGCACAGAGAGACTAAGAACCAAAGATATAACGCAAAGAGTGAAAATGAAGAACTACTGGCAGGGAGGAGTTTGCTTGGCATTTGCTGATGAGGTATTATGCTGGCTGTACGGGACAGTTAAAGAGAATGAAGATTACATATTGCAGTTTGCTCCTCCTTTCAACCGTTTGGAGCTTTTACAGGCCCAATCTTGCCCTGAGGAAATCACTAACCATGTTCAGCAATTGTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

526

Amino Acids

58.88

Weight (kDa)

5.18

Isoelectric Point (pI)

55.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1339
AccII CGCG 2 cut(s) 441, 1221
AciI CCGC 4 cut(s) 74, 441, 1295, 1348
AclWI GGATC 3 cut(s) 585, 1008, 1046
AcoI YGGCCR 1 cut(s) 891
AcsI RAATTY 2 cut(s) 430, 1100
AcuI CTGAAG 2 cut(s) 747, 1068
AdeI CACNNNGTG 2 cut(s) 859, 992
AfaI GTAC 1 cut(s) 1457
AfiI CCNNNNNNNGG 4 cut(s) 73, 497, 702, 1061
AgsI TTSAA 8 cut(s) 12, 264, 537, 712, 845, 1100, 1176, 1510
AhlI ACTAGT 1 cut(s) 368
AjnI CCWGG 1 cut(s) 1054
AluBI AGCT 4 cut(s) 699, 1207, 1264, 1522
AluI AGCT 4 cut(s) 699, 1207, 1264, 1522
Alw26I GTCTC 1 cut(s) 1351
AlwI GGATC 3 cut(s) 585, 1008, 1046
AoxI GGCC 5 cut(s) 75, 891, 983, 1131, 1530
ApaI GGGCCC 1 cut(s) 1135
ApeKI GCWGC 2 cut(s) 16, 159
ApoI RAATTY 2 cut(s) 430, 1100
AspLEI GCGC 2 cut(s) 200, 441
AspS9I GGNCC 5 cut(s) 76, 500, 1131, 1132, 1531
AsuC2I CCSGG 1 cut(s) 498
AsuHPI GGTGA 6 cut(s) 81, 236, 257, 673, 815, 1076
AvaII GGWCC 1 cut(s) 500
AxyI CCTNAGG 1 cut(s) 1545
BaeGI GKGCMC 1 cut(s) 1135
BalI TGGCCA 1 cut(s) 893
BanII GRGCYC 2 cut(s) 791, 1135
BauI CACGAG 1 cut(s) 911
BbsI GAAGAC 2 cut(s) 108, 735
BbvI GCAGC 2 cut(s) 28, 171
BccI CCATC 4 cut(s) 100, 746, 1143, 1178
BceAI ACGGC 1 cut(s) 172
BciT130I CCWGG 1 cut(s) 1056
BciVI GTATCC 2 cut(s) 1068, 1272
BclI TGATCA 1 cut(s) 1113
BcnI CCSGG 1 cut(s) 498
BcoDI GTCTC 1 cut(s) 1351
BcuI ACTAGT 1 cut(s) 368
BfaI CTAG 1 cut(s) 369
BfmI CTRYAG 1 cut(s) 655
BfoI RGCGCY 1 cut(s) 201
BfuI GTATCC 2 cut(s) 1068, 1272
BglII AGATCT 1 cut(s) 322
BisI GCNGC 3 cut(s) 17, 75, 160
BlsI GCNGC 3 cut(s) 18, 76, 161
Bme1390I CCNGG 2 cut(s) 498, 1056
Bme18I GGWCC 1 cut(s) 500
BmgT120I GGNCC 5 cut(s) 76, 500, 1131, 1132, 1531
BmiI GGNNCC 4 cut(s) 636, 739, 1132, 1133
BmrFI CCNGG 2 cut(s) 498, 1056
BmrI ACTGGG 1 cut(s) 1027
BmsI GCATC 5 cut(s) 61, 469, 492, 1078, 1321
BmuI ACTGGG 1 cut(s) 1027
BpiI GAAGAC 2 cut(s) 108, 735
BplI GAGNNNNNCTC 4 cut(s) 729, 761, 1248, 1280
BpuEI CTTGAG 3 cut(s) 721, 777, 1253
BpuMI CCSGG 1 cut(s) 498
BsaBI GATNNNNATC 1 cut(s) 321
BsaJI CCNNGG 2 cut(s) 917, 1055
Bsc4I CCNNNNNNNGG 4 cut(s) 73, 497, 702, 1061
Bse118I RCCGGY 1 cut(s) 1334
Bse1I ACTGG 2 cut(s) 1022, 1409
Bse21I CCTNAGG 1 cut(s) 1545
Bse3DI GCAATG 1 cut(s) 286
Bse8I GATNNNNATC 1 cut(s) 321
BseBI CCWGG 1 cut(s) 1056
BseDI CCNNGG 2 cut(s) 917, 1055
BseGI GGATG 6 cut(s) 83, 92, 149, 460, 483, 1333
BseJI GATNNNNATC 1 cut(s) 321
BseLI CCNNNNNNNGG 4 cut(s) 73, 497, 702, 1061
BseMI GCAATG 1 cut(s) 286
BseMII CTCAG 1 cut(s) 1536
BseNI ACTGG 2 cut(s) 1022, 1409
BseRI GAGGAG 6 cut(s) 88, 91, 1204, 1256, 1428, 1491
BseSI GKGCMC 1 cut(s) 1135
BseXI GCAGC 2 cut(s) 28, 171
BsgI GTGCAG 1 cut(s) 498
Bsh1236I CGCG 2 cut(s) 441, 1221
Bsh1285I CGRYCG 2 cut(s) 445, 1339
BshFI GGCC 5 cut(s) 77, 893, 985, 1133, 1532
BsiEI CGRYCG 2 cut(s) 445, 1339
BsiSI CCGG 2 cut(s) 498, 1335
BslFI GGGAC 2 cut(s) 323, 1474
BslI CCNNNNNNNGG 4 cut(s) 73, 497, 702, 1061
BsmAI GTCTC 1 cut(s) 1351
BsmFI GGGAC 2 cut(s) 323, 1474
BsnI GGCC 5 cut(s) 77, 893, 985, 1133, 1532
Bsp120I GGGCCC 1 cut(s) 1131
Bsp1286I GDGCHC 2 cut(s) 791, 1135
Bsp143I GATC 6 cut(s) 322, 577, 742, 1000, 1051, 1113
Bsp68I TCGCGA 1 cut(s) 1221
BspACI CCGC 4 cut(s) 74, 441, 1295, 1348
BspANI GGCC 5 cut(s) 77, 893, 985, 1133, 1532
BspCNI CTCAG 1 cut(s) 1537
BspFNI CGCG 2 cut(s) 441, 1221
BspLI GGNNCC 4 cut(s) 636, 739, 1132, 1133
BspPI GGATC 3 cut(s) 585, 1008, 1046
BsrDI GCAATG 1 cut(s) 286
BsrFI RCCGGY 1 cut(s) 1334
BsrI ACTGG 2 cut(s) 1022, 1409
BssAI RCCGGY 1 cut(s) 1334
BssECI CCNNGG 2 cut(s) 917, 1055
BssMI GATC 6 cut(s) 322, 577, 742, 1000, 1051, 1113
BssSI CACGAG 1 cut(s) 911
BssT1I CCWWGG 1 cut(s) 917
Bst2BI CACGAG 1 cut(s) 911
Bst2UI CCWGG 1 cut(s) 1056
Bst4CI ACNGT 3 cut(s) 527, 1465, 1514
Bst6I CTCTTC 2 cut(s) 225, 231
BstC8I GCNNGC 5 cut(s) 202, 481, 652, 817, 1451
BstDEI CTNAG 4 cut(s) 581, 1291, 1361, 1545
BstEII GGTNACC 1 cut(s) 803
BstF5I GGATG 6 cut(s) 83, 92, 149, 460, 483, 1333
BstFNI CGCG 2 cut(s) 441, 1221
BstH2I RGCGCY 1 cut(s) 201
BstHHI GCGC 2 cut(s) 200, 441
BstKTI GATC 6 cut(s) 325, 580, 745, 1003, 1054, 1116
BstMAI GTCTC 1 cut(s) 1351
BstMBI GATC 6 cut(s) 322, 577, 742, 1000, 1051, 1113
BstMCI CGRYCG 2 cut(s) 445, 1339
BstMWI GCNNNNNNNGC 4 cut(s) 168, 177, 206, 457
BstNI CCWGG 1 cut(s) 1056
BstPI GGTNACC 1 cut(s) 803
BstSCI CCNGG 2 cut(s) 496, 1054
BstSFI CTRYAG 1 cut(s) 655
BstSLI GKGCMC 1 cut(s) 1135
BstUI CGCG 2 cut(s) 441, 1221
BstV1I GCAGC 2 cut(s) 28, 171
BstV2I GAAGAC 2 cut(s) 108, 735
BstX2I RGATCY 3 cut(s) 322, 577, 1051
BstYI RGATCY 3 cut(s) 322, 577, 1051
Bsu36I CCTNAGG 1 cut(s) 1545
BsuI GTATCC 2 cut(s) 1068, 1272
BsuRI GGCC 5 cut(s) 77, 893, 985, 1133, 1532
BtsCI GGATG 6 cut(s) 83, 92, 149, 460, 483, 1333
BtsI GCAGTG 3 cut(s) 187, 211, 894
BtsIMutI CAGTG 4 cut(s) 187, 211, 894, 1044
BtuMI TCGCGA 1 cut(s) 1221
Cac8I GCNNGC 5 cut(s) 202, 481, 652, 817, 1451
CfoI GCGC 2 cut(s) 200, 441
Cfr10I RCCGGY 1 cut(s) 1334
Cfr13I GGNCC 5 cut(s) 76, 500, 1131, 1132, 1531
Csp6I GTAC 1 cut(s) 1456
CviAII CATG 2 cut(s) 1082, 1562
CviQI GTAC 1 cut(s) 1456
DdeI CTNAG 4 cut(s) 581, 1291, 1361, 1545
DpnI GATC 6 cut(s) 324, 579, 744, 1002, 1053, 1115
DpnII GATC 6 cut(s) 322, 577, 742, 1000, 1051, 1113
DraIII CACNNNGTG 2 cut(s) 859, 992
EaeI YGGCCR 1 cut(s) 891
Eam1104I CTCTTC 2 cut(s) 225, 231
EarI CTCTTC 2 cut(s) 225, 231
Eco130I CCWWGG 1 cut(s) 917
Eco24I GRGCYC 2 cut(s) 791, 1135
Eco32I GATATC 1 cut(s) 28
Eco47I GGWCC 1 cut(s) 500
Eco57I CTGAAG 2 cut(s) 747, 1068
Eco81I CCTNAGG 1 cut(s) 1545
Eco91I GGTNACC 1 cut(s) 803
EcoO109I RGGNCCY 1 cut(s) 1131
EcoO65I GGTNACC 1 cut(s) 803
EcoRII CCWGG 1 cut(s) 1054
EcoRV GATATC 1 cut(s) 28
EcoT14I CCWWGG 1 cut(s) 917
EcoT38I GRGCYC 2 cut(s) 791, 1135
ErhI CCWWGG 1 cut(s) 917
FaeI CATG 2 cut(s) 1085, 1565
FaqI GGGAC 2 cut(s) 323, 1474
FatI CATG 2 cut(s) 1081, 1561
FauI CCCGC 1 cut(s) 1288
FbaI TGATCA 1 cut(s) 1113
FblI GTMKAC 1 cut(s) 1339
Fnu4HI GCNGC 3 cut(s) 17, 75, 160
FokI GGATG 6 cut(s) 70, 79, 136, 447, 470, 1340
FriOI GRGCYC 2 cut(s) 791, 1135
Fsp4HI GCNGC 3 cut(s) 17, 75, 160
FspBI CTAG 1 cut(s) 369
GlaI GCGC 2 cut(s) 199, 440
GluI GCNGC 3 cut(s) 17, 75, 160
HaeII RGCGCY 1 cut(s) 201
HaeIII GGCC 5 cut(s) 77, 893, 985, 1133, 1532
HapII CCGG 2 cut(s) 498, 1335
HhaI GCGC 2 cut(s) 200, 441
Hin1II CATG 2 cut(s) 1085, 1565
Hin6I GCGC 2 cut(s) 198, 439
HinP1I GCGC 2 cut(s) 198, 439
HincII GTYRAC 1 cut(s) 1340
HindII GTYRAC 1 cut(s) 1340
HinfI GANTC 3 cut(s) 173, 1036, 1172
HpaII CCGG 2 cut(s) 498, 1335
HphI GGTGA 6 cut(s) 81, 236, 257, 673, 815, 1076
Hpy166II GTNNAC 2 cut(s) 644, 1340
Hpy188I TCNGA 3 cut(s) 35, 337, 577
Hpy188III TCNNGA 5 cut(s) 557, 612, 632, 959, 1220
Hpy8I GTNNAC 2 cut(s) 644, 1340
Hpy99I CGWCG 5 cut(s) 56, 115, 136, 139, 1008
HpyAV CCTTC 4 cut(s) 497, 662, 818, 1002
HpyCH4III ACNGT 3 cut(s) 527, 1465, 1514
HpyCH4IV ACGT 1 cut(s) 715
HpyCH4V TGCA 7 cut(s) 365, 479, 626, 819, 934, 967, 1492
HpyF10VI GCNNNNNNNGC 4 cut(s) 168, 177, 206, 457
HpyF3I CTNAG 4 cut(s) 581, 1291, 1361, 1545
HpySE526I ACGT 1 cut(s) 715
Hsp92II CATG 2 cut(s) 1085, 1565
HspAI GCGC 2 cut(s) 198, 439
Ksp22I TGATCA 1 cut(s) 1113
Kzo9I GATC 6 cut(s) 322, 577, 742, 1000, 1051, 1113
LmnI GCTCC 5 cut(s) 737, 1204, 1269, 1504, 1519
Lsp1109I GCAGC 2 cut(s) 28, 171
LweI GCATC 5 cut(s) 61, 469, 492, 1078, 1321
MaeI CTAG 1 cut(s) 369
MaeII ACGT 1 cut(s) 715
MaeIII GTNAC 7 cut(s) 245, 679, 803, 859, 869, 1013, 1064
MalI GATC 6 cut(s) 324, 579, 744, 1002, 1053, 1115
MboI GATC 6 cut(s) 322, 577, 742, 1000, 1051, 1113
MfeI CAATTG 1 cut(s) 1571
MflI RGATCY 3 cut(s) 322, 577, 1051
MhlI GDGCHC 2 cut(s) 791, 1135
MlsI TGGCCA 1 cut(s) 893
MluCI AATT 8 cut(s) 259, 430, 520, 621, 995, 1100, 1124, 1571
MluNI TGGCCA 1 cut(s) 893
MlyI GAGTC 2 cut(s) 182, 1045
MmeI TCCRAC 2 cut(s) 177, 1206
Mox20I TGGCCA 1 cut(s) 893
MscI TGGCCA 1 cut(s) 893
MseI TTAA 3 cut(s) 288, 879, 1467
MslI CAYNNNNRTG 3 cut(s) 465, 558, 1086
Msp20I TGGCCA 1 cut(s) 893
MspI CCGG 2 cut(s) 498, 1335
MspR9I CCNGG 2 cut(s) 498, 1056
MunI CAATTG 1 cut(s) 1571
MvaI CCWGG 1 cut(s) 1056
MvnI CGCG 2 cut(s) 441, 1221
MwoI GCNNNNNNNGC 4 cut(s) 168, 177, 206, 457
NciI CCSGG 1 cut(s) 498
NdeII GATC 6 cut(s) 322, 577, 742, 1000, 1051, 1113
NlaIII CATG 2 cut(s) 1085, 1565
NlaIV GGNNCC 4 cut(s) 636, 739, 1132, 1133
NmuCI GTSAC 5 cut(s) 245, 679, 803, 859, 1064
NruI TCGCGA 1 cut(s) 1221
PcsI WCGNNNNNNNCGW 1 cut(s) 562
PfeI GAWTC 1 cut(s) 1172
PkrI GCNGC 3 cut(s) 18, 76, 161
PleI GAGTC 2 cut(s) 181, 1044
PpsI GAGTC 2 cut(s) 181, 1044
Psp6I CCWGG 1 cut(s) 1054
PspEI GGTNACC 1 cut(s) 803
PspGI CCWGG 1 cut(s) 1054
PspN4I GGNNCC 4 cut(s) 636, 739, 1132, 1133
PspOMI GGGCCC 1 cut(s) 1131
PspPI GGNCC 5 cut(s) 76, 500, 1131, 1132, 1531
PsuI RGATCY 3 cut(s) 322, 577, 1051
RruI TCGCGA 1 cut(s) 1221
RsaI GTAC 1 cut(s) 1457
RsaNI GTAC 1 cut(s) 1456
RseI CAYNNNNRTG 3 cut(s) 465, 558, 1086
SalI GTCGAC 1 cut(s) 1338
SaqAI TTAA 3 cut(s) 288, 879, 1467
SatI GCNGC 3 cut(s) 17, 75, 160
Sau3AI GATC 6 cut(s) 322, 577, 742, 1000, 1051, 1113
Sau96I GGNCC 5 cut(s) 76, 500, 1131, 1132, 1531
SchI GAGTC 2 cut(s) 182, 1045
ScrFI CCNGG 2 cut(s) 498, 1056
SduI GDGCHC 2 cut(s) 791, 1135
SfaNI GCATC 5 cut(s) 61, 469, 492, 1078, 1321
SfcI CTRYAG 1 cut(s) 655
SinI GGWCC 1 cut(s) 500
SmiMI CAYNNNNRTG 3 cut(s) 465, 558, 1086
SmlI CTYRAG 3 cut(s) 700, 792, 1268
SmoI CTYRAG 3 cut(s) 700, 792, 1268
SpeI ACTAGT 1 cut(s) 368
Sse9I AATT 8 cut(s) 259, 430, 520, 621, 995, 1100, 1124, 1571
SsiI CCGC 4 cut(s) 74, 441, 1295, 1348
SspI AATATT 2 cut(s) 835, 850
SspMI CTAG 1 cut(s) 369
StyD4I CCNGG 2 cut(s) 496, 1054
StyI CCWWGG 1 cut(s) 917
TaaI ACNGT 3 cut(s) 527, 1465, 1514
TaiI ACGT 1 cut(s) 718
TaqI TCGA 4 cut(s) 611, 907, 1006, 1339
TasI AATT 8 cut(s) 259, 430, 520, 621, 995, 1100, 1124, 1571
TauI GCSGC 1 cut(s) 77
TfiI GAWTC 1 cut(s) 1172
Tru1I TTAA 3 cut(s) 288, 879, 1467
Tru9I TTAA 3 cut(s) 288, 879, 1467
TscAI CASTG 4 cut(s) 187, 211, 901, 1051
TseFI GTSAC 5 cut(s) 245, 679, 803, 859, 1064
TseI GCWGC 2 cut(s) 16, 159
Tsp45I GTSAC 5 cut(s) 245, 679, 803, 859, 1064
TspDTI ATGAA 8 cut(s) 72, 108, 117, 138, 357, 576, 1409, 1491
TspGWI ACGGA 2 cut(s) 327, 1083
TspRI CASTG 4 cut(s) 187, 211, 901, 1051
VpaK11BI GGWCC 1 cut(s) 500
XapI RAATTY 2 cut(s) 430, 1100
XmiI GTMKAC 1 cut(s) 1339
XspI CTAG 1 cut(s) 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.